Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12306
Subject:
NR_148522.2
Aligned Length:
3902
Identities:
1418
Gaps:
2483

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGAGAGCAGAGAGCGAGCGGAGAGCGAGGTGTAGAGAAACCGAGGGGGAGAGAACCCGAGTGTGTGTATGCGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGCGTGTGTGAGCGCGAGCGAGCGAGAGAGAGGAGCGAGAGAGTGTGAGCGAGAAAGAATAAAAGGAAAGAAG  148

Query    1  ---------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGTACCAACGG  65
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGTACCAACGG  222

Query   66  GCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTCGACCATTC  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTCGACCATTC  296

Query  140  CCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGGACCTCAAG  213
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGGACCTCAAG  370

Query  214  CCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATGCACAAAGG  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATGCACAAAGG  444

Query  288  CTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCAGAAGACTC  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCAGAAGACTC  518

Query  362  TGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCTGCCTGCGC  435
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct  519  TGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAG-----------------  575

Query  436  CAGCCCCCTTCACATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTGCGCCGCCT  509
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576  -------------ATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTGCGCCGCCT  636

Query  510  TTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGGGTGCGCCT  583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  637  TTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGGGTGCGCCT  710

Query  584  TTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCATGCCGGGA  657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  711  TTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCATGCCGGGA  784

Query  658  GCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAGCAGATGGC  731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  785  GCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAGCAGATGGC  858

Query  732  TGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGCACTGATGC  805
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct  859  TGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGCA---ATGC  929

Query  806  AGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCGCTGCCGCC  879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  930  AGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCGCTGCCGCC  1003

Query  880  CAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCAGGTGGCAG  953
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004  CAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCAGGTGGCAG  1077

Query  954  CACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTTCACCGGCC  1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078  CACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTTCACCGGCC  1151

Query 1028  TCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACCCAGCACAG  1101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152  TCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACCCAGCACAG  1225

Query 1102  AGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAG---CAGCTGCCTACCC  1172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct 1226  AGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAGGTCCAGCTGCCTACCC  1299

Query 1173  TGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGAAGGGC  1246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300  TGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGAAGGGC  1373

Query 1247  CCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGTTCCTC  1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374  CCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGTTCCTC  1447

Query 1321  CCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGAT  1394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448  CCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGAT  1521

Query 1395  CGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC----------------  1452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct 1522  CGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGCGCCGGCGGGAG  1595

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1596  CGTCCCCCGGGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGAGCTAGGAATAA  1669

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1670  AGTTCACGTAATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTACATTAAAAAAC  1743

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1744  AAACCTCTCTCTATATATATTTATAAATGAGAACTGTTGGATGACACCTTTGACATATCAGCCAATATCAATCA  1817

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1818  AGCTGAAGACTCCAGACACTGTCTGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATGGAGTTCAG  1891

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1892  AGGGCACGTGTTTGGGGGAAAATATATATGACATGAAGAAGAAGATGAAGAAAAATGAGAAAAAAACACACAAA  1965

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1966  AGGCAACTTTAAAACAAAATATCACGAGCAGACGGGGAGGCTGAAGGGCTGGGAGCTGGGAGGAGACGCTGCTT  2039

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2040  ACCGATCCCGGGGCTTTTCCAGCCCACGGGCGCCTGACGCAGGCTGGGGCAAGTGGTGCGTGGGGCCTGGTCCC  2113

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2114  CAAGGGGCGGCTGAGAGGCCGCCACTGAGCATCTCTATCTGTCATTCCTTTAGCTATTTAGGGACCAAAGGACC  2187

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2188  AAACTTTTTATTGCAGATGTGTAGCTCTATGTCAAATAGAGGGGGAATGGAGGACCCCCTCCTTCCTGCCTCAT  2261

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2262  GGCTGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAAAATGTAATAAAAAATTAAAAAAAAAACAAAAAACAA  2335

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2336  AAAAAACAACAAAAAAAGGAAAAATAACGCTTCAATGCTTTTAAAACAGCAAGATAATAGTTCTTTGATACTTT  2409

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2410  GAGAGGCGCTTTGATGACCCTCATCCAAGTCTATGACACTTTCCTATGGTTTTCTGTATTCTATGTCTGGATGG  2483

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2484  AGCTGTTAAAAGATGAACAAATTGGTGGATATTTGGGGAAAGCAACACAAATCTTAAAACTCACCCGTGAAGTG  2557

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2558  TGAGAAAACAAGGAGGGGAACAAATGGGACTTACCAAGCAAGGTCATTGTTGTGAAAAGTCTGTAAATGCTTCT  2631

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2632  AACTCTTCCCCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAAGGAAAAGTTTAAAATACCTATATAAT  2705

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2706  AGAAGAAAAATTAGAGGAAAGCAAAAAATAAAAAAAAAAAATAAAAAAGGAAAAAAAAAACCTATAGAAGTTAG  2779

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2780  CATTACTGCTAAAATCCCAGATGTTGTAGGACTGTACTTTTGTAGAGTTTAGACAGAGCATCAATCCCTTCTCC  2853

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2854  CCGCGAGTGCAGTCGGATGCCGTTGTCCCCAAGGGCCAGGCCGAACTCGCCCCACACCTGCGGGCGCCTGGCTG  2927

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2928  CCGACGCCGGTGGAGGCCACGCCGTCGGTCGGGAACGGTCGCGTCGCCCGGGTCGCCGCCGCCGCCGCCGCCGT  3001

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3002  CATCCTCGCCTCTCGCTTCCCTCTGGGAGCTGCGCGCGCTTCACTCACCTTCCGCTTCACTCGCCTTCCACGCT  3075

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3076  TGCTCCAGAGACTTTCCGGGCAAGGGAGAACTGGGAACTTTCATCTTAAAACAACTAGACAACACACACACACA  3149

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3150  CAAAACCTTAAAAAAGAGAGAGAAAAATAAACAATCTTTGAAGAATTTCTGAAACTGTTTACAAGGAATTTTGA  3223

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3224  AAAACAGGGATGTTTAAATGATGCCGGCTCTGTTTTTCTGTAAATAAATTTGCATATTTTGTAGGACTTTTAAT  3297

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3298  TGTAATGATAGAGAAAAAAACAAGGAAAACTATTTAATGAAAGCACGATATTTATCTTTGGTAAATGACTTTAG  3371

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3372  AGCAGTTAAAGACATTGCTTAAAAAACTCAGAATCAGAAAAAACACTGAATTATTTAAGAACACATATATTTTA  3445

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3446  AAGTATAACATATTTATTATAATTTATTTGCACCCTTGGGAAGATTGCTTTGGCATTCTGCCTTGATTCCTTCT  3519

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3520  CATTGATGTCCAGGTCATCTGGAGGCCGGGGGTTCTCAGACCTACCAGTTTCCCTTTAGAAGAACAAATTTCCA  3593

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3594  GTTCCTCTAGGGCCTCCTGCCTTTCCTTTCTTTCTGTCAATTTTGTTGTTGTTGTTGTTTTTCATTTTCTTTTT  3667

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3668  TTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAAAAAA  3741

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3742  GAAAACAGCTGCAGTTCAGTACAACTGCTCTTTTCACACTCAACTCCCTAAAACTCCTTGTAACCTTCTGTAAC  3815

Query 1453  ------------------------------------------------------  1452
                                                                  
Sbjct 3816  TATTGGATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAA  3869

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.