Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12306
Subject:
NR_148527.2
Aligned Length:
3905
Identities:
1451
Gaps:
2453

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGAGAGCAGAGAGCGAGCGGAGAGCGAGGTGTAGAGAAACCGAGGGGGAGAGAACCCGAGTGTGTGTATGCGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGCGTGTGTGAGCGCGAGCGAGCGAGAGAGAGGAGCGAGAGAGTGTGAGCGAGAAAGAATAAAAGGAAAGAAG  148

Query    1  ---------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGTACCAACGG  65
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGTACCAACGG  222

Query   66  GCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTCGACCATTC  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTCGACCATTC  296

Query  140  CCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGGACCTCAAG  213
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGGACCTCAAG  370

Query  214  CCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATGCACAAAGG  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATGCACAAAGG  444

Query  288  CTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCAGAAGACTC  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCAGAAGACTC  518

Query  362  TGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCTGCCTGCGC  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCTGCCTGCGC  592

Query  436  CAGCCCCCTTCAC---ATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTGCGCCG  506
            |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAGCCCCCTTCACAAGATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTGCGCCG  666

Query  507  CCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGGGTGCG  580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGGGTGCG  740

Query  581  CCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCATGCCG  654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCATGCCG  814

Query  655  GGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAGCAGAT  728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAGCAGAT  888

Query  729  GGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGCACTGA  802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGCACTGA  962

Query  803  TGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCGCTGCC  876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCGCTGCC  1036

Query  877  GCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCAGGTGG  950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCAGGTGG  1110

Query  951  CAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTTCACCG  1024
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTTCACCG  1184

Query 1025  GCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACCCAGCA  1098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACCCAGCA  1258

Query 1099  CAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAG---CAGCTGCCTA  1169
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct 1259  CAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAGGTCCAGCTGCCTA  1332

Query 1170  CCCTGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGAAG  1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCCTGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGAAG  1406

Query 1244  GGCCCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGTTC  1317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GGCCCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGTTC  1480

Query 1318  CTCCCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCA  1391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CTCCCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCA  1554

Query 1392  GATCGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC-------------  1452
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct 1555  GATCGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGCGCCGGCGG  1628

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1629  GAGCGTCCCCCGGGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGAGCTAGGAA  1702

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1703  TAAAGTTCACGTAATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTACATTAAAA  1776

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1777  AACAAACCTCTCTCTATATATATTTATAAATGAGAACTGTTGGATGACACCTTTGACATATCAGCCAATATCAA  1850

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1851  TCAAGCTGAAGACTCCAGACACTGTCTGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATGGAGTT  1924

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1925  CAGAGGGCACGTGTTTGGGGGAAAATATATATGACATGAAGAAGAAGATGAAGAAAAATGAGAAAAAAACACAC  1998

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1999  AAAAGGCAACTTTAAAACAAAATATCACGAGCAGACGGGGAGGCTGAAGGGCTGGGAGCTGGGAGGAGACGCTG  2072

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2073  CTTACCGATCCCGGGGCTTTTCCAGCCCACGGGCGCCTGACGCAGGCTGGGGCAAGTGGTGCGTGGGGCCTGGT  2146

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2147  CCCCAAGGGGCGGCTGAGAGGCCGCCACTGAGCATCTCTATCTGTCATTCCTTTAGCTATTTAGGGACCAAAGG  2220

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2221  ACCAAACTTTTTATTGCAGATGTGTAGCTCTATGTCAAATAGAGGGGGAATGGAGGACCCCCTCCTTCCTGCCT  2294

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2295  CATGGCTGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAAAATGTAATAAAAAATTAAAAAAAAAACAAAAAA  2368

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2369  CAAAAAAAACAACAAAAAAAGGAAAAATAACGCTTCAATGCTTTTAAAACAGCAAGATAATAGTTCTTTGATAC  2442

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2443  TTTGAGAGGCGCTTTGATGACCCTCATCCAAGTCTATGACACTTTCCTATGGTTTTCTGTATTCTATGTCTGGA  2516

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2517  TGGAGCTGTTAAAAGATGAACAAATTGGTGGATATTTGGGGAAAGCAACACAAATCTTAAAACTCACCCGTGAA  2590

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2591  GTGTGAGAAAACAAGGAGGGGAACAAATGGGACTTACCAAGCAAGGTCATTGTTGTGAAAAGTCTGTAAATGCT  2664

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2665  TCTAACTCTTCCCCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAAGGAAAAGTTTAAAATACCTATAT  2738

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2739  AATAGAAGAAAAATTAGAGGAAAGCAAAAAATAAAAAAAAAAAATAAAAAAGGAAAAAAAAAACCTATAGAAGT  2812

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2813  TAGCATTACTGCTAAAATCCCAGATGTTGTAGGACTGTACTTTTGTAGAGTTTAGACAGAGCATCAATCCCTTC  2886

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2887  TCCCCGCGAGTGCAGTCGGATGCCGTTGTCCCCAAGGGCCAGGCCGAACTCGCCCCACACCTGCGGGCGCCTGG  2960

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2961  CTGCCGACGCCGGTGGAGGCCACGCCGTCGGTCGGGAACGGTCGCGTCGCCCGGGTCGCCGCCGCCGCCGCCGC  3034

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3035  CGTCATCCTCGCCTCTCGCTTCCCTCTGGGAGCTGCGCGCGCTTCACTCACCTTCCGCTTCACTCGCCTTCCAC  3108

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3109  GCTTGCTCCAGAGACTTTCCGGGCAAGGGAGAACTGGGAACTTTCATCTTAAAACAACTAGACAACACACACAC  3182

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3183  ACACAAAACCTTAAAAAAGAGAGAGAAAAATAAACAATCTTTGAAGAATTTCTGAAACTGTTTACAAGGAATTT  3256

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3257  TGAAAAACAGGGATGTTTAAATGATGCCGGCTCTGTTTTTCTGTAAATAAATTTGCATATTTTGTAGGACTTTT  3330

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3331  AATTGTAATGATAGAGAAAAAAACAAGGAAAACTATTTAATGAAAGCACGATATTTATCTTTGGTAAATGACTT  3404

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3405  TAGAGCAGTTAAAGACATTGCTTAAAAAACTCAGAATCAGAAAAAACACTGAATTATTTAAGAACACATATATT  3478

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3479  TTAAAGTATAACATATTTATTATAATTTATTTGCACCCTTGGGAAGATTGCTTTGGCATTCTGCCTTGATTCCT  3552

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3553  TCTCATTGATGTCCAGGTCATCTGGAGGCCGGGGGTTCTCAGACCTACCAGTTTCCCTTTAGAAGAACAAATTT  3626

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3627  CCAGTTCCTCTAGGGCCTCCTGCCTTTCCTTTCTTTCTGTCAATTTTGTTGTTGTTGTTGTTTTTCATTTTCTT  3700

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3701  TTTTTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAAA  3774

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3775  AAAGAAAACAGCTGCAGTTCAGTACAACTGCTCTTTTCACACTCAACTCCCTAAAACTCCTTGTAACCTTCTGT  3848

Query 1453  ---------------------------------------------------------  1452
                                                                     
Sbjct 3849  AACTATTGGATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAA  3905

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