Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12306
Subject:
XR_001782320.1
Aligned Length:
4272
Identities:
1388
Gaps:
2820

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGGCAGGGAACTTGAACCGGTCCAGCCTGTTTAAACCGAAAGGACAGAGATCCTGTCTGTTCAATGTAAAAAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAAAAAAGAAGAAGAAGAAAAAAATCACATCAGACCGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAGAAGAAGAGGGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGAGAGAGAAGAGAGAGAGAAGAGAGAAATAGAACGAGAGCCCAGAGCAGAGCAAGGTGTAGGAAACCAAAGGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGAGAACCCGAGTGTGTGCGTGTGTGTATGAGTGTGTGTGAGTGTGTGTGTGTGTGTGCGCGCGTGTGTGAGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGAGAGTGTGTGTGCGTGTGTGTGTGTGTGTGAGTGTGTGTGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGCGTGTGCGTGTGTGAGCGCGAGCGAGCGAGTGAGGGAGAGGAGCGAGAGAGTGCGAGCGAGAAAGAATAAA  518

Query    1  -----------------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGT  57
                             |||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct  519  AGGAAAGATTTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCGAGCCTCAGT  592

Query   58  ACCAACGGGCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC  131
            |||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  593  ACCAACGGGCTAGGCAGCAGCCCGGGCAGCGCCGGGCATATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC  666

Query  132  GACCATTCCCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGG  205
            |||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  667  GACCATTCCCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGAAACCTGGATGAGAAGG  740

Query  206  ACCTCAAGCCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG  279
            |||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACCTCAAGCCCCTCTTCGAGGAGTTCGGCAAGATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG  814

Query  280  CACAAAGGCTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA  353
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CACAAAGGCTGCGCTTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA  888

Query  354  GAAGACTCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT  427
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAAGACCCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT  962

Query  428  GCCTGCGCCAGCCCCCTTCAC---ATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGAC  498
            |||||||||||||||||||||   |||||||||||||||||||.|||||||||||||||||.||.|||||||||
Sbjct  963  GCCTGCGCCAGCCCCCTTCACAAGATAGAAAACTCTTCGTGGGTATGCTCAACAAGCAACAATCTGAGGACGAC  1036

Query  499  GTGCGCCGCCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAA  572
            |||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||.||||||||||||||
Sbjct 1037  GTGCGCCGCCTCTTCGAGGCCTTCGGGAACATCGAGGAGTGCACTATCCTGCGCGGGCCGGACGGCAACAGCAA  1110

Query  573  GGGGTGCGCCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGA  646
            ||||||||||||||||||||||||||||||.||||||||.||.||||||||||||||.|||||.||||||||||
Sbjct 1111  GGGGTGCGCCTTTGTGAAGTACTCCTCCCATGCCGAGGCACAAGCCGCCATCAACGCTCTACATGGCAGCCAGA  1184

Query  647  CCATGCCGGGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATG  720
            |||||||.||||||||.|||||.||||||||||||||.||.|||||.||||||||||||||.|||||.||.|||
Sbjct 1185  CCATGCCTGGAGCCTCCTCCAGCCTGGTGGTCAAGTTTGCAGACACTGACAAGGAGCGCACAATGCGACGGATG  1258

Query  721  CAGCAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCA  794
            |||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.|||||
Sbjct 1259  CAGCAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCCTTCGGAGCCTATGGCGCCTATGCTCA  1332

Query  795  GGCACTGATGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCT  868
            |||||||||||||||||||||.|||||.||||||||.||||||||.||.|||||||||||.|||||||||||||
Sbjct 1333  GGCACTGATGCAGCAGCAAGCAGCCCTCATGGCATCGGTCGCGCAAGGAGGCTACCTGAATCCCATGGCTGCCT  1406

Query  869  TCGCTGCCGCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACC  942
            |||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1407  TCGCTGCCGCCCAAATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCAGCCGCACCTATGACCCCAACC  1480

Query  943  TCAGGTGGCAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGG  1016
            ||||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.||
Sbjct 1481  TCAGGTGGCAGCACCCCTCCAGGCATCACTGCACCAGCTGTGCCTAGCATCCCATCCCCCATTGGGGTGAACGG  1554

Query 1017  CTTCACCGGCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCT  1090
            ||||||.|||||||||||.||||||||||||||.||||||||||||||||||||.|||||||||||.|||||||
Sbjct 1555  CTTCACGGGCCTCCCCCCTCAGGCCAATGGGCAGCCTGCTGCGGAAGCTGTGTTTGCCAATGGCATTCACCCCT  1628

Query 1091  ACCCAGCACAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAGCAGCT  1164
            ||||||||||||||||||||||.||.|||||||||||||||||||||||.|||||||||||||||||||.|.||
Sbjct 1629  ACCCAGCACAGAGCCCCACCGCAGCCGACCCCCTGCAGCAGGCCTACGCTGGAGTGCAGCAGTATGCAGGACCT  1702

Query 1165  GCCTACCCTGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAG  1238
            ||||||||||||||||||||||||||.||||||||||||||||||||.||.||||||||.||||||||.|||||
Sbjct 1703  GCCTACCCTGCTGCCTATGGTCAGATTAGCCAGGCCTTTCCTCAGCCACCGCCAATGATTCCCCAGCAACAGAG  1776

Query 1239  AGAAGGGCCCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGA  1312
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AGAAGGGCCCGAGGGCTGTAACCTGCTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGA  1850

Query 1313  TGTTCCTCCCTTTC------------------------------------------------------------  1326
            ||||||||||||||                                                            
Sbjct 1851  TGTTCCTCCCTTTCGGTAATGTCATCTCCTCGAAAGTGTTTGTGGATCGGGCGACTAACCAAAGTAAATGCTTT  1924

Query 1327  GGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGATCGGCAT  1400
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct 1925  GGCTTCGTGAGCTTCGACAACCCGGCCAGCGCACAGACCGCCATCCAGGCCATGAACGGCTTCCAGATAGGCAT  1998

Query 1401  GAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC----------------------  1452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||                      
Sbjct 1999  GAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGCGCCGGCGGGAGCGTCCC  2072

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2073  CCGGGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGAGCTAGGAATAAAGTTCA  2146

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2147  CGTAATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTACATTAAAAACAAACCTC  2220

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2221  TTTCTCTCTCTATTTATAAATGAGAACTGTTGGACGACACCTTTGACATATCAGCCAATACCAATCAAGCTGAC  2294

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2295  GACTCCAGACACTCCGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATGGAGTGCAGAGGGCATGT  2368

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2369  GTTTGGGGAAAAATATACATGACATAAAGATGACGACGAAGAAGAAAAATGATATAAAACAAACAAAAAACCCG  2442

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2443  CGACTTTAAAATGAAATAACGTGAGCCCAGATGGGGAAGCTGAAGGGCTGGGCACTAGGAGGAGATGCTGCTGC  2516

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2517  CAACCGATCCTGGGGCTTTTCCCGCCCGTAGGCGCCTGAGGCAGGCAGGGGCAAGTGTACAATGGGGCCTAGTC  2590

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2591  CCCAGCAGGCGGCTGGGAGGCCGCCACTGAGCATCTCTATTTGTCATTCCTTTAGCTATTTAGGGACCAAAGGA  2664

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2665  CCAAACTTTTTATTGCAGATGTGTAGCTCTGTCAATTAGAGGTGGAATGGAGACCAACCTCCTTCCTGCCTCCT  2738

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2739  GGCTGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAATGTAATAAAAAATAAAAATAAAAAAAAAATAAAAAA  2812

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2813  AGAACAAAAAAAACAAGGAAAAAAAATAATGCTTCAACGCTTTTAAAACAGCAAGATACTAGTTCTTTGATACT  2886

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2887  TTGAGAGGCGCTTTGATTACCCCGATTGAAGTCTCTGAAACTTTCCTATGGTTTTCTGTATTATATGTCTGGAT  2960

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2961  GGAGCTGTTTAGATACATTGATTGGTGGATATTTGGAGAAAGCAACAAAGATATTAAGTCATTAACCATGAAGA  3034

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3035  GAACACGAGGGGAACCAGGGGACTTCGAAGGCAAGGTAATTGTTGTGAAAAGTCTGTAAATGCTTCTAATTCTT  3108

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3109  CCCCCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAGGAAAAGTTTAAAATACCTATATCATAGAAGAA  3182

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3183  AAAAAAATTAGAGGAAAGCAAAAAAATAAAAAAAAAAAGGAAAAAAAAACCTTATAGAAGTTAGCATTATGCTA  3256

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3257  AAATCCCAGATGTTGTAGGACTGTACTTCTGTAGAGTTTAGACTGAGCATCGATCCCGTCTCCCCGCGAGTGCT  3330

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3331  GTCGGACTCCGTCCCCAAGGGCCAGGCCGGACTGTCCAGACCTGCAGGCTCCGGCCAGAAGCGCCGCTCCGGAA  3404

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3405  GCGTCCTGCCGCCTCTCGCTTTGCCAGCCTGGGAGCCGCGCGCATGCGCGCTCTCTCTGCCCTTCTCACCTCTG  3478

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3479  CTTCACTCGCCTTCTGTGCTTGTTCCGGAGACTTTCCAGGCCAGGGAGAACTGGGAACTTCTCATCTTCAAACA  3552

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3553  ACTAGACAACACACACACACACAAAACCTTAAACAAGAGAGAGAAAACAAACAATCTTTGAAGAATTTCTGAAA  3626

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3627  CTGTTTACAAGGAATTTTGAAAAACAGGGATGTTTAAATGATGCTGGCTCTGTTTTTCTGTAAATAAATTTGCA  3700

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3701  TATTTTGTAGGACTTTTAATTGTAATGATAGAGAAAAAACAAGGAAAACTATTTAATGAAAGCACGATATTTAT  3774

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3775  CTTTGGTAAATGACTTTAGAGCAGTTAAAGACATTGCTTAAAAACTCAGAATCAGAAAAACACTGAATTATTTA  3848

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3849  AGAACACATATATTTTAAAGTATAACATATTTATTATAATTTATTTGCACCTTGGGAAGACTTGCTTTGCATTC  3922

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3923  TGCCTCAAGAGCTTCTCATTGATGTCCATCTGGAGGCCAGGGGGGTCTTGGAACTACCATTTTTTTTTCCTTTA  3996

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3997  GATCAACAAAATTCTGGTTGCCCTCAGGCCTCCTTCCTTTTCTTTCCATCTATTTTGTTGTTGTTTTACTTCAT  4070

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 4071  TTAGTTTTCTTTTTCTTTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTTGTAAAAAAACAAAAACAAAAAA  4144

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 4145  CCCAACAGCTGCAGTTCAATACAACTGCTCTTTTCACACGACTCCCTAAACTCCTTGTAACCTTCTGTAACTAT  4218

Query 1453  ------------------------------------------------------  1452
                                                                  
Sbjct 4219  TGGATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAAAAA  4272

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