Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12708
Subject:
NM_001163262.1
Aligned Length:
2322
Identities:
1679
Gaps:
465

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGATGTGACGAGCAGCTCGGGCGGCGGCGACCCCCGGCAGATCGAGGAGACCAAGCCGCTGCTTGGGAGCGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTGTCTGGCCCCGAGGGCACCAAGGTGATGGGCGCCGTGCCTTGCCGCCGGGCCCTGCTGCTTTGCAACGGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGAGGTACAAGCTGCTGCAGGAGGGCGACATTCAGGTCTGTGTCATCCGGCACCCTCGGACCTTTCTCAGCAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATCCTCACCTCCAAATTCCTGAGGCGCTGGGAGCCGCACCACCTAACGCTGGCCGACAACAGCTTAGCATCCGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CACGCCGTCTGGGTACATGGAAAACTCGGTCTCCTACAGCGCCATTGAAGACGTTCAGCCGCTGTCCTGGGAGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACGCCCCGAAGTACTGTTTACAGCTCACGATCCCCGGAGGGACCGTCCTGCTGCAGGCTGCCAACAGCTACCTG  444

Query    1  ----ATGGCAAGTGTTGCC--------------CAGAAAAAGATTTACAAATATAAGAAAGTGCTGAGTAACCC  56
                ||   .||||.|.||              .|||||||||||||||||||.||||||||.|||||||||||
Sbjct  445  CGAGAT---CAGTGGTTCCATTCTCTGCAGTGGAAGAAAAAGATTTACAAATACAAGAAAGTCCTGAGTAACCC  515

Query   57  AAGCCGCTGGGAAGTTGTCTTGAAAGAGATCCGGACCCTGGTGGACATGGCCCTGACATCCCCCCTGCAGGATG  130
            ||||||||||||.|||||||||||.|||||.|||||.|||||||||||||||||.||.||.||.||||||||||
Sbjct  516  AAGCCGCTGGGAGGTTGTCTTGAAGGAGATACGGACGCTGGTGGACATGGCCCTCACGTCGCCTCTGCAGGATG  589

Query  131  ACTCCATCAACCAGGCCCCACTGGAAATCGTCTCGAAACTGCTCTCAGAGAACACAAACTTGACCACCCAGGAG  204
            |.||.|||||||||||.||.||||||||||||||.||||||||||||||||||||||||.|||||||.||||||
Sbjct  590  ATTCTATCAACCAGGCTCCGCTGGAAATCGTCTCAAAACTGCTCTCAGAGAACACAAACCTGACCACTCAGGAG  663

Query  205  CATGAAAACATCATTGTGGCAATCGCTCCTTTGCTGGAAAACAACCACCCACCACCAGATCTCTGTGAATTCTT  278
            ||.||.|||||||||||||||||.||.|||.||||.|||||||||||||||||.|||||.|||||.||||||||
Sbjct  664  CACGAGAACATCATTGTGGCAATTGCGCCTCTGCTAGAAAACAACCACCCACCCCCAGACCTCTGCGAATTCTT  737

Query  279  TTGCAAGCACTGCAGAGAGCGGCCCCGGTCCATGGTGGTCATCGAGGTGTTCACCCCCGTGGTGCAGCGAATCC  352
            .|||||||||||||||||||||||||||||.|||||||||||||||||||||||.||.|||||.|||.|.||||
Sbjct  738  CTGCAAGCACTGCAGAGAGCGGCCCCGGTCTATGGTGGTCATCGAGGTGTTCACACCAGTGGTTCAGAGGATCC  811

Query  353  TCAAGCATAACATGGACTTTGGGAAGTGCCCGCGACTGAGGCTGTTTACTCAGGAGTACATCCTTGCCTTGAAC  426
            |.||.|||||.||||||||||||||||||||..|.||||||||.||.||.||||||||.||.||||||.|||||
Sbjct  812  TTAAACATAATATGGACTTTGGGAAGTGCCCAAGGCTGAGGCTCTTCACCCAGGAGTATATTCTTGCCCTGAAC  885

Query  427  GAGCTCAACGCGGGGATGGAAGTGGTGAAGAAGTTCATTCAGAGCATGCACGGCCCCACAGGGCACTGCCCCCA  500
            |||||||||||.||.|||||.|||||.|||||||||||.||.||||||||.||||||||||||||||||||.||
Sbjct  886  GAGCTCAACGCAGGCATGGAGGTGGTAAAGAAGTTCATACAAAGCATGCATGGCCCCACAGGGCACTGCCCACA  959

Query  501  CCCCCGGGTCCTGCCCAACCTGGTGGCCGTGTGCCTGGCTGCCATCTACTCCTGCTATGAAGAGTTCATCAACA  574
            .|||||||||||||||||.||.|||||.|||||||||||||||||.||||||||||||||||||||||||||||
Sbjct  960  TCCCCGGGTCCTGCCCAATCTCGTGGCTGTGTGCCTGGCTGCCATATACTCCTGCTATGAAGAGTTCATCAACA  1033

Query  575  GCCGCGACAATTCCCCAAGCCTGAAGGAAATCCGGAACGGCTGCCAGCAGCCGTGCGACCGGAAGCCCACTTTA  648
            |.||||||||.|||||.||||||||.||.|||||.|||||||||||||||||.||||||||.||||||||.|||
Sbjct 1034  GTCGCGACAACTCCCCCAGCCTGAAAGAGATCCGAAACGGCTGCCAGCAGCCATGCGACCGAAAGCCCACCTTA  1107

Query  649  CCTCTGCGCCTTCTGCACCCCAGCCCGGACCTGGTGTCTCAGGAAGCCACGCTGTCTGAGGCCCGGCTCAAGTC  722
            ||||||||.||.||||||||||||||||||||||||||||||||||||||..||||||||.|.|||||.|||||
Sbjct 1108  CCTCTGCGTCTGCTGCACCCCAGCCCGGACCTGGTGTCTCAGGAAGCCACATTGTCTGAGCCACGGCTGAAGTC  1181

Query  723  GGTGGTCGTGGCCTCCAGTGAGATCCACGTGGAGGTGGAACGCACCAGCACTGCCAAGCCGGCGCTGACGGCCA  796
            ||||||.|||||||||||.|||.||||||||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct 1182  GGTGGTTGTGGCCTCCAGCGAGGTCCACGTGGAGGTGGAGCGCACCAGCACTGCCAAGCCGGCGCTGACCGCCA  1255

Query  797  GCGCAGGCAACGACAGCGAGCCCAACCTCATCGACTGCCTCATGGTCAGCCCCGCCTGCAGCACCATGAGCATC  870
            ||.|.|||||||||||||||||||||||.||.|||||.||.|||||||||||.|||||..|.||||||||||||
Sbjct 1256  GCACGGGCAACGACAGCGAGCCCAACCTTATTGACTGTCTGATGGTCAGCCCAGCCTGTGGGACCATGAGCATC  1329

Query  871  GAGCTGGGCCCCCAGGCCGACCGCACGCTCGGCTGCTACGTGGAAATCCTCAAGCTGCTGTCAGACTATGATGA  944
            |||||||||||||||||||.||||||||||||.|||.|||||||.|||||||||||||||||.|||||.|||||
Sbjct 1330  GAGCTGGGCCCCCAGGCCGGCCGCACGCTCGGTTGCCACGTGGAGATCCTCAAGCTGCTGTCCGACTACGATGA  1403

Query  945  CTGGAGACCGTCTCTGGCCAGTTTGCTTCAACCCATTCCATTCCCCAAAGAAGCTCTCGCACATGAGAAGTTCA  1018
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||.||||||||||
Sbjct 1404  CTGGAGACCGTCTCTGGCCAGCTTGCTTCAACCCATTCCATTCCCCAAAGAAGCTCTCGCCCACGAGAAGTTCA  1477

Query 1019  CCAAGGAACTGAAGTACGTGATTCAGAGGTTCGCCGAAGACCCCAGGCAAGAGGTCCACTCATGCCTGCTGAGC  1092
            |.|||||||||||||||||||||||||||||.||.|||||.||.||.||.||.||||||||.||.|||||||||
Sbjct 1478  CAAAGGAACTGAAGTACGTGATTCAGAGGTTTGCAGAAGATCCAAGACAGGAAGTCCACTCCTGTCTGCTGAGC  1551

Query 1093  GTGCGGGCCGGCAAAGATGGCTGGTTCCAGCTCTACAGCCCCGGAGGGGTGGCCTGCGACGATGACGGGGAGCT  1166
            ||||||||.|||||.||||||||||||||||||||||||||.||||||||||||||.||.||||||||||||||
Sbjct 1552  GTGCGGGCAGGCAAGGATGGCTGGTTCCAGCTCTACAGCCCTGGAGGGGTGGCCTGTGATGATGACGGGGAGCT  1625

Query 1167  GTTCGCCAGCATGGTGCACATCCTCATGGGCTCCTGTTACAAGACCAAAAAATTCCTGCTCTCCCTGGCAGAAA  1240
            |||.|||||||||||||||||.|||||||||||||||||||||||||||||.||.||||||||.||||||||||
Sbjct 1626  GTTTGCCAGCATGGTGCACATTCTCATGGGCTCCTGTTACAAGACCAAAAAGTTTCTGCTCTCACTGGCAGAAA  1699

Query 1241  ACAAGCTGGGTCCCTGCATGCTCCTGGCACTGAGGGGGAACCAGACCATGGTGGAGATCCTGTGCTTGATGCTG  1314
            ||||||||||.|||||.|||||||||||.|||||.||||||||||||||||..|||||||||||.|||||||||
Sbjct 1700  ACAAGCTGGGCCCCTGTATGCTCCTGGCCCTGAGAGGGAACCAGACCATGGCAGAGATCCTGTGTTTGATGCTG  1773

Query 1315  GAATACAACATCATCGACAACAACGACACCCAACTGCAGATCATCTCAACCCTGGAGAGCACAGACGTGGGGAA  1388
            |||||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||.||||||||.||
Sbjct 1774  GAATACAACATCATCGACAACAACGACACCCAACTGCAGATCATCTCCACGCTGGAGAGCACGGACGTGGGCAA  1847

Query 1389  GCGCATGTACGAGCAGCTGTGTGACCGGCAGCGGGAGCTGAAGGAGCTGCAAAGGAAAGGCGGGCCCACCAGGC  1462
            |||||||||.||.||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1848  GCGCATGTATGAACAGCTGTGCGACCGGCAGCGGGAGCTGAAGGAGCTGCAAAGGAAAGGCGGACCCACCAGGC  1921

Query 1463  TAACACTGCCCTCCAAGTCCACAGACGCTGACTTGGCTCGTTTGCTGAGCTCCGGCTCCTTCGGAAACCTGGAG  1536
            ||||||||||||||||||||||.||.||.|||.||||.||..||||||||||.||||||||.||||||||||||
Sbjct 1922  TAACACTGCCCTCCAAGTCCACGGATGCGGACCTGGCCCGCCTGCTGAGCTCTGGCTCCTTTGGAAACCTGGAG  1995

Query 1537  AACCTCAGTTTGGCCTTCACCAATGTAACCAGTGCCTGCGCCGAGCACCTCATCAAACTGCCTTCGCTCAAGCA  1610
            ||||||||.||||||||||||||.||.||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1996  AACCTCAGCTTGGCCTTCACCAACGTCACCAGTGCCTGCGCCGAGCACCTCATCAAACTGCCTTCCCTCAAGCA  2069

Query 1611  GCTGAACCTGTGGTCCACTCAGTTTGGAGACGCTGGCCTTCGGCTCCTGTCGGAACACCTCACCATGCTCCAGG  1684
            |||.||.|||||||||||.||||||||||||||.|||||.||||||||.|||||.||||||||.||||||||.|
Sbjct 2070  GCTCAATCTGTGGTCCACGCAGTTTGGAGACGCCGGCCTGCGGCTCCTTTCGGAGCACCTCACTATGCTCCAAG  2143

Query 1685  TGCTGAACCTGTGCGAGACCCCGGTCACAGACGCTGGCCTGCTGGCCCTGAGCTCCATGAAGAGTCTCTGCAGT  1758
            |||||||||||||.||||||||.|||||.|||||.|||.||||||||||.|||||||||||||||||.||||||
Sbjct 2144  TGCTGAACCTGTGTGAGACCCCAGTCACCGACGCGGGCTTGCTGGCCCTCAGCTCCATGAAGAGTCTTTGCAGT  2217

Query 1759  TTAAACATGAACAGCACCAAGCTCTCAGCTGACACCTACGAAGATCTGAAGGCCAAGCTTCCCAATTTGAAGGA  1832
            |||||.||||||||||||||||||||.||||||||||||||.||||||||||||||||||||.||..|.|||||
Sbjct 2218  TTAAATATGAACAGCACCAAGCTCTCGGCTGACACCTACGAGGATCTGAAGGCCAAGCTTCCTAACCTAAAGGA  2291

Query 1833  AGTGGACGTCCGCTACACCGAAGCCTGG  1860
            .||.||.||.||||||||.|||||||||
Sbjct 2292  GGTTGATGTTCGCTACACGGAAGCCTGG  2319

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