Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12729
Subject:
NR_145445.2
Aligned Length:
5233
Identities:
389
Gaps:
4793

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACGCGCGCAAACCCGGAAGCAGATCGCGTGGAGTGAAGGTCCCTCAGCGGCGCGATTGACATCTAAAGACTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGGTACATGAGGAAGAAACCCGGAAAAGGAAAGCAGAGGAGTCAGGGATGGCTCTTCCTCAGGGTCTATTGAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGGTATCTCTTCCAAATGCACAATGAAGGAGTTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCATCAACAGCACAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAACGTCATCACATTGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGATTTTTCCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCAGTGGCAAGAAGATGAAAGAAATG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCCATGAAGCACCCATGACAAAAATCAAAAAATTGATGGGTAGTACAGAGCAATATGATCACAGGCATGCTGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AACAAGCCTATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTGTCTGAACTCCACATATTTCAGCCCAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGGGAAAATTAATAATCAAGTGGAGAAGTCTATCAACGATGCTTCCTCGGTTTCAACAGCCCAAAGAATTTCTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTAGGCCCAAAACCCATATATCTAATAACTATGGGGATAATTTTCTGAATTATTCATTACTCACACAAAGACAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAAGTACGCATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAAGCCTTTAATTATAGCTCACTCTTAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAAACATCAGATTATTCATCTAGGAGAGAAACAATATAAATGTGATGTATGTGACAAGGTCTTTATTCGGAAGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GATACCTTGCACGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGTCCTTC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGTCAGATGTCATCCCTTACATATCATCATCGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAAAGCTTTCAGACACAATTCAGCCCTTCAAAGACATAGGAGAATTCATACTGGAGAGAAACCACATAAGTGTA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATGAGTGTGGCAAGACCTTTAGTCAGAAGTCATACCTTGCATGCCATCGTAGCATTCATACTGGAAAGAAACCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TACGAATGTGAAGAATGTGACAAAGCTTTCAGTTTCAAATCAAACCTTGAAAGTCATAGGATAACTCATACTGG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGAGAAACCATACAAGTGTAATGATTGTGGCAAGACCTTCAGTCATATGTCAACCCTTACATGCCATCGTAGAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGATGAAGCTTTCCGTTTCAAATCAAGTCTTGAAAGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CATAGGAGAATTCATAATGGAGAGAAACTGTACAAATGTAATGAGTGTGGCAAGACCTTCAGTCAGGAGTTATC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCTTACCTGCCATTGTAGACTTCATAGTGGAGAGAAACCTTGCAAGTGTGGAGAATGTGACAAGGCTTACAGTT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCAAATAAAATCTTGAAATACGTCAGAAAATTCATACTGGAGAGAAATGTTATAAGTGTAATGATTGTGGCAAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATCTTCAGTCATACGTCATCCATTGTATACCATCATAAATTTCATAGTGGAGAGAAACCTTACAAATGTGAAGA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATGTGATGAAGCTTTCAGTTTCAAATCAAACCTTGAAAGACATAGGAGAATTCACACTGGTGAGAAACCTTACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGTGTAATAGGTGTGGCAAGACCTTCAGTCATACATCATCCCTTACATGCCATCATAGACTTCATACTGGAGAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AAACCTTACAAATGTGAAGAATGTGATGAAACTTTCAGATACAAATCAAATCTTGAAAGACATAGGAGAATTCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TAATGGAGAGAAACCGTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGAAGTCATGCCTTACACGCCATC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATAGACTTCATACTGGAAATAAATCTTATAAGTGTAATGAGTGTGGCAAGACCTTCAGTAAGGAGTTAACACAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCCATCATAGACGTCATACTGGAGAGAAACCTTAGAAGTGCAATGAGTGTGGCAAAACCTTTCATAGGCAGTCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCGCTTATTTACCATCAAGCAATCCATGGCAGAGGGAAACTTTACAAATGTAATGATTGTCACCACGTCTTCAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TAATGCTACAACTATTGCAAATCATTGGAGAATCCATAATAAAGAGAGACCTTACAAGTGTGATAAATGTGACA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AATTTTTCAGACATCGTTCATACCTTGCAGTTCACGGGCGAACTCATGCTGGAGAGAAACCTTACAAATGTGAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GAATGTGATAAAGCTTTCAGATTCAAATCAAACCTTGAAAGTCATAGGAGAATTCATACTAGAGAGAAACCTTA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CAAGTGTAATGAGTGTGGTAAGATGTTCAGTCAAAATTCGGCCCTTGTAATTCATAAGGCAATTCATACTGGAG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGCAAAGCAAAGCTTGCATGTCATCATAGACTT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CATACTGGAGAGAACGCTTGCAAGTGTAATAAATGTGGCGAGGTTTTTAATCAACAAGCACACCTTGCACGTCA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TCATAGAACTCATACTGGAGAGAAACATTACAAGTGTAATGAGTGTGGCAAGACCTACTCTCACAATTCAGTCC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTGTAATTCATAAGACAATTCACACTGGGGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACCTTCCATCAC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AATTCAGTCCTTGTAATTCATAAAACAATTCATACTGGAGAGAAACAAGCGTAATGAATGTGGCGAGGTTTTCA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  ATCAACAAGCACACGTTGCACGTCATCATAGAATTCATACTGGAGAGAAACCTTAGAAATGTGAAGAATGTGAC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AAAGTTTACAGTCGCAAATCAAACCTCGAAAGACAGGAGAATTCATACTGGAGAGAAACCATAAAAATGTAAGA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GTTTTTGACAAGGCTTTCGGACGTGATTCACACCTGGCACAACATCCCAGAGTTCACACTGGAGAGAAACCTTA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CAAGTGTAATGAGTGTGTCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAGGCAATCCGTAGTGTAG  3182

Query    1  ------------------------------------------ATGCTACAACGATTACAAATCATTGGAGAATC  32
                                                      ||||||||||.|||..||||||.|||||||.|
Sbjct 3183  GGAAACTTGACTAACGTAATGATTCTCACAACGTCTTCAGTAATGCTACAACCATTGTAAATCACTGGAGAAGC  3256

Query   33  CATAATGAAGAGAGATCTTACAAGTGTAATAAATGTGGCAAATTTTTCAGAGATCGTTCACATATTGCAGGTCA  106
            |||||||||||||||||||||||.||||||||.||||||||||||||||||.||||||||.|.|||||.|.|||
Sbjct 3257  CATAATGAAGAGAGATCTTACAAATGTAATAATTGTGGCAAATTTTTCAGACATCGTTCATACATTGCCGTTCA  3330

Query  107  TCGGTGAACTCATACTGGAGAGAAACCTTACAAATGTCATGACTGTGCCAAGGTCTTCAGTCAAGCTTCATCCT  180
            |.||.||||||||.|||||||||||.||||| ||||||||||.||||.||||||||||||||||||||||||.|
Sbjct 3331  TTGGCGAACTCATGCTGGAGAGAAATCTTAC-AATGTCATGATTGTGGCAAGGTCTTCAGTCAAGCTTCATCTT  3403

Query  181  ATGCAAAACATAGGAGAATTTATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCCTTTGCTTCA  254
            .||||||||  |||||||||.||||||||||||||||||||||||||||||||.||||||||||||||.|||||
Sbjct 3404  TTGCAAAAC--AGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATCGTGGCAAAGCCTTTACTTCA  3475

Query  255  CGTTCACACGTCATTAGACATCAGAGAATCTATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGT  328
            |.|||.|||.||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 3476  CATTCTCACCTCATTAGACATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGT  3549

Query  329  CTTCAGTCCAAGATCACTCCATGCAGAACATCAGAAAATTCATTTTTGA----------GATAACCG---TTCC  389
            |||||||||.|..|||||||.|||||||.||||||||||||||||||.|          |||.||.|   ||  
Sbjct 3550  CTTCAGTCCGACTTCACTCCTTGCAGAATATCAGAAAATTCATTTTTCAGGATTTCTATGATGACTGGATTT--  3621

Query  390  CAATGAAATGAGTATAGCAA---------ACCATCAA-------------GCATTAAT-TGACATT--------  432
               ||||.|..||   |.||         .|||||.|             |..||||| |..||||        
Sbjct 3622  ---TGAATTTTGT---GGAACGCTTTTTCTCCATCTACTAAGGTGATGTGGTTTTAATCTTTCATTCTGTTCTA  3689

Query  433  GGAGTCAATTCAGCATTGACT-----------------------------------------------------  453
            |..||  ||..|.||||||.|                                                     
Sbjct 3690  GTGGT--ATATAACATTGATTTGCTTGAATATGTTGAACCATCCTTGCATCCCAGAAATAACTGGCACTTGAAT  3761

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3762  ATCTACATTTTTTTAATATCCTCTTGAATACAGTTTTCTAGGACAAGGGATCTTCAAGAAGTTCTGGAAAAATA  3835

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3836  CATATTATGAGAAAATTGTGCATGAATTTCACAATTTTTGCACCAAAATAAACTAGTGCTAGTCTGTTATAACA  3909

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3910  TGTCTGAACAGGCTCTAGTTTGATGCCCTCAAAAGGATAAGACATGAGTATAAAAAGAGACTCCATCAAAGCAA  3983

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3984  TATAAATTCTGATGAAATTTAAACAAGAAGAAACATTAAATTTATGATGAGACCAGATGCAGTGGCTCAGGCCT  4057

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4058  GTAATCCCAGCATTTTCAGAGGCTGAGACAGGTGGGCCACATGAGCCCAGGTATTCAAGACCAGCCTGGGAAAC  4131

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4132  GTGGGGAAATCCCCTTTTCTACAAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCCTGCCGTCTCAGTT  4205

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4206  ATTGTGAAGTCTGTGCAGGGAGGATGGCATGAACCTGGGAGGTCAAGATTGCAGTGAGCTATGATCATGCCACT  4279

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4280  GCACTCCAGCATGGGTGATGGAGAGAGATACTGTCTTAAAAAAAGAATACTTGTGGTAACGTTTGGGTAGAGGA  4353

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4354  ATAATGAAATCATTGATGCTTTATAAAAAGGTTATGGGGACAATGCCCAAAAGAAATAAACAGTTTGTAAACGG  4427

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4428  ATAACTTATTTTGAGTTAGGGCAAGACAATGTTGACAGTGATGCATGAAGCAGCAGGCAGACCTTCCACATCAT  4501

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4502  TTTTACAGAAAAAAAAATTAATCTTGTTCATGCTGCAATGAAGAGGACTGACAGCAAACAGCAGAAACATAGTC  4575

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4576  AGAATTTAGAGAACAGCCTGGTTAACATGGTGAAACACCATCTCTAGTAAAAATACAAAAATTAGCTCAGCATG  4649

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4650  GTGGCATGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGGGAATCTCTTGAACCCAGGAGGTGGAGGA  4723

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4724  TGCAGTGAACTGAGATGGCAACATTACACTCTAGCCTGAGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAA  4797

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4798  AATTGTCAAGTTCCTTCTCTTCCATTCTTTGCCATCGTGGTGTGTGCTTGACTCTGCTTCTTGCCACATCTTCT  4871

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4872  CAGAAGACTTTCAGGATTAAGCGATTCCTGGCCAAGAAACAAAAGCAAAACCATCCCACTCCCCTGTGGATTCA  4945

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4946  GATCAAAACTGGTAATAAAATCAGGTACGACTCCAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAG  5019

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 5020  GAATTGCATGTGAGATGGCACACATATTTATGCTGTCTGAGCATCACAATCACGTTACCATATCAAGCTGAAAA  5093

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 5094  TGTCACCACTATCTGGACAGTTGGACATGTTTTATTGGGAATATGTTTTTTCTCTGTAAATTTGTTATAAACGC  5167

Query  454  -----------------------------------------------------  453
                                                                 
Sbjct 5168  ATTGGTTGGCTGTGTTCAGTAATAAACGTGAGACTTTTCATTTCAAAACAAAA  5220

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