Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12729
Subject:
XR_002958314.1
Aligned Length:
4427
Identities:
403
Gaps:
3977

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTGAAGGTCACGTCGCCATGATATCTCTTCCAAATGCTTGATGAAAAAGGTGGAAGGGTCACTTGACCCAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGTTGAAGGCTGCAGTGAGCCCTGTTTTTGCCACCACACTCCAGCCTGGGATTGATTTCTAAAGACTCATGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGTCAGGCATGGCTCTTCCTCAGGGACGCTTGACTTTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATTCCTGAACCCTGCACAGAGGGCTTTGTACAGGGAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGGATATCTCTTCCAAACACATGATGAAGGAGGTCTTGTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAGACATCAAAGTTATCACATTGGAGACT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGCACCCACGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGAAACAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCAAAGGTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTTTCAACATCCCAAAGAATTTCCTGTAGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTGGCAAGCTCTTTAATCACAAGCAATAC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGTGTAAAGAGTGTGGAAAGTCCTTCAGTTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAACCTTACAAGTGTAATGAGTGTGGCAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAAGACTTCATACTGGAGTGAAACCTTACAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCAAACCATACTAGAATTCATAGTGGAGAGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATCAAGCCTTGCACGTCATCATATACTTCAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCAGAAATCAACCCTTGAGAGACATAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATACAGCTTTCACGTGTAATTCACAGCTGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATGAGTGTCGCAAGACCTTCAGCCGCAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTTACAAGTGTAATCAGTGTGGCAATACCTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTAGAGAAATCTTACAAATGTACGGTTTGTA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAATTCACACTGCAAAGAAACCTTACAAGTGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTCATCGTAGACTTCATACTGGAGAGAAACC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCTCTTGAGTCACATAAGAGAATTCATACTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTGGAATTCACAGCTGGCACGACATACAAGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGACCTTCAGTTACAAGTCATCACTTGTATG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTGTGACAAGGCTTTCGTGTGTCGTTCCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGAAACCTTACAAGTGTAGTGAGTGCAGCAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCATAGTGGTGAGAAACCTTACAAGTGTAACG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCGTAGACTTCATACTGGAGAGAAATCTTAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCAAGACATATTAGAATTCACACTGCAGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAATGAACAATCACACCTTTCACGTCATCATAGAATTC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTCAGTCGCAAATCACACCTTAAAAGACAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGACCGGTCAACACT  2812

Query    1  -----------------------------------------------------------------------ATG  3
                                                                                   |..
Sbjct 2813  TATTCACCATCAGGCAATTCATGGTATAGGGAAATTTGATTAATATAATGATTGTCACAAAGTCTTCAGTAACA  2886

Query    4  CTACAACGATTACAAATCATTGGAGAATCCATAATGAAGAGAGATCTTACAAGTGTAATAAATGTGGCAAATTT  77
            |||||||.|||.||||||||||||||||||||.|||||||||.|||||...||||||||||||||||||..|||
Sbjct 2887  CTACAACAATTGCAAATCATTGGAGAATCCATGATGAAGAGAAATCTTCTGAGTGTAATAAATGTGGCATGTTT  2960

Query   78  TTCAGAGATCGTTCACATATTGCAGGTCATCGGTGAACTCATACTGGAGAGAAACCTTACAAATGTCATGACTG  151
            ||||||.||.|||||.|.|||||||.||||.||..|.||||||||||||||||||||||||||||||||||.||
Sbjct 2961  TTCAGACATTGTTCATACATTGCAGTTCATTGGCAACCTCATACTGGAGAGAAACCTTACAAATGTCATGATTG  3034

Query  152  TGCCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGAGAATTTATACAGGAGAGAAACCTCACAAGT  225
            .|.|||||||||||||||||||||||||||||||||||  |||||||||.||||||||||||||||||||||||
Sbjct 3035  AGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAAC--AGGAGAATTCATACAGGAGAGAAACCTCACAAGT  3106

Query  226  GTGATGATTGTGGCAAAGCCTTTGCTTCACGTTCACACGTCATTAGACATCAGAGAATCTATACTGGACAGAAA  299
            |||||||||||||||||||||||.||||||.|||||||.||.||.||||||||||||||.||||||||||||||
Sbjct 3107  GTGATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGACATCAGAGAATCCATACTGGACAGAAA  3180

Query  300  TCTTACAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCAAGATCACTCCATGCAGAACATCAGAAAATTCATTT  373
            ||||.|||||||||||||||||||||||||||||||||.||.|||||||.||||||||||.|||||||||||||
Sbjct 3181  TCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTCCTTGCAGAACATGAGAAAATTCATTT  3254

Query  374  TTGAGATAACCGTTCCCAATG------------AAATGAGTAT------------------------------A  405
            ||||||||||.||||||||||            ||.|| ||||                              .
Sbjct 3255  TTGAGATAACTGTTCCCAATGCAGCTTTTCAGTAAGTG-GTATGCCTGGGAAACATGGTGAGACCCCCGTTTCT  3327

Query  406  GCAAACCAT-CAAGCATTAATTG-----------ACAT---TGGAG--TCA----------ATTCAGCA-----  447
            |||||..|| |||..||||..||           ||||   ||.||  |||          |.||.|||     
Sbjct 3328  GCAAAAAATACAAAAATTAGCTGGGAATGATGGCACATGCCTGCAGTATCAACTACTGTGGAGTCTGCAGTGGG  3401

Query  448  --------TTGA--CT----------------------------------------------------------  453
                    ||||  ||                                                          
Sbjct 3402  AGGATGGCTTGAGCCTGGGAGGTCAAGACTATAGTGAGCTGTAATCATGCTACTGCACTCCAGCATGGTTGACA  3475

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3476  GAGCAAGATGCTGTCTAAAAAAGAATACTTATTGTAAAGTTTGGGTACAGGAATAATGAAGTCATTGATAGTTT  3549

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3550  ATGAACAGGCTATGGAGTTGATGCCCAAAAGAAATAAACAGTTTGTAAATGAATAACTTATTTTGAGTTGTGAC  3623

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3624  AAGACAATGTTGAAAGTGATGCATGAAGCGGCAGGCAGACCATCCACATCAGTTTTACAGAAAAAAAGTTAATC  3697

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3698  TTGTTCGTGCTGCAGTGAAGAGAACAGCAAACAGGAGAAACAATAGTCAGGAATTCAATAATAGCCTGGTTAAC  3771

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3772  ATGATGAAACCCCGTCTCTACTAAAAATACAAAGATTAGCTGGGCACAGTGGTGGGCACCTGTAATCCCAGCTA  3845

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3846  CTCAAGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGCGGAAGTTTCGATGAGCCGGGATCCTGCCGTTG  3919

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3920  CACTCCAGCCTGGGCAACAAGAGCAAACCTCTGTCTAAAACAAACAAACAAAAAGGTCTAGCCCCCTCTCCTCC  3993

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3994  TTTGTCTGCCATCATGGTGTGTGCTTGACTCCACTTCTTGTCATGTCTTCTCACAAGACTTTCAGGATTAAGCG  4067

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4068  GTTTCTGGCCAACAACCAAAAGTAAAATCGTCCGATTTCCCAGTGGATTCGAATGAAAACTGGCAATAAAATCA  4141

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4142  GGTCCAACTTTAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAGGAATTGCACGTGAGATGGCACAC  4215

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4216  ATATTTATGCTGTGTGAGCATCATAATCACGTTACTTAAGCTGAAAATGTCACTACCATCTGGAGACTTGGACA  4289

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4290  TGTTTTATTGGGAATATATTTTTTTCTCTCTGAATCTGTTATGAACGCATTGGTTGGGTGGGTTCAGTAATAAA  4363

Query  454  -------------------------------------------------------------  453
                                                                         
Sbjct 4364  CATGTGAGACCTTTCATTTCAAAAAAAAAATTTTAATGACATAATAGATTACCTAAATTTC  4424

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