Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12729
Subject:
XR_935832.3
Aligned Length:
4231
Identities:
403
Gaps:
3781

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGATTAACGCAAACCCGGAAGCGGATCGGGTGGAGTGAAGGTCACGTCGCCATGGATTGATTTCTAAAGACTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGTCAGGCATGGCTCTTCCTCAGATATCTCTTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAACACATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACATCAAAGTTATCACATTGGAGACTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTCAAGAAGATGAAAGAAATGGCCATGAAGCACCCACGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACTCCACATATTTCAGATCAAAGGTGAAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAACATCCCAAAGAATTTCCTGTAGGCCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCCTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TAATTGTAGCTCACTCTTAAGGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCAAGCTCTTTAATCACAAGCAATACCTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGTGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAGAGTGTGGAAAGTCCTTCAGTTACAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAACC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTACAAGTGTAATGAGTGTGGCAAGGTCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAAGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTTCATACTGGAGTGAAACCTTACAAATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCAAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCATACTAGAATTCATAGTGGAGAGAAAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATCAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCCTTGCACGTCATCATATACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CAGAAATCAACCCTTGAGAGACATAAGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGCTTTCACGTGTAATTCACAGCTGGCACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGTGTCGCAAGACCTTCAGCCGCAGGTCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTTAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AAGTGTAATCAGTGTGGCAATACCTTCCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTAGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAAATCTTACAAATGTACGGTTTGTAACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAATTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ACACTGCAAAGAAACCTTACAAGTGTAATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTCAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCTCT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGAGTCACATAAGAGAATTCATACTGGAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTGGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATTCACAGCTGGCACGACATACAAGAATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGACC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTCAGTTACAAGTCATCACTTGTATGGCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGACAAGGCTTTCGTGTGTCGTTCCTATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTAATGAGTGCAGCAAGACCTTCAGTAACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGAAA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCTTACAAGTGTAGTGAGTGCAGCAAGACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCATAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGTGAGAAACCTTACAAGTGTAACGACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCGTA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GACTTCATACTGGAGAGAAATCTTACAAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGACATATTAGAATTCACACTGCAGAGAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAATGAACAATC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACACCTTTCACGTCATCATAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTCA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GTCGCAAATCACACCTTAAAAGACATAGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AAAGCCTTTAGTGACCGGTCAACACTTATTCACCATCAGGCAATTCATGGTATAGGGAAATTTGATTAATATAA  2664

Query    1  -----------------------ATGCTACAACGATTACAAATCATTGGAGAATCCATAATGAAGAGAGATCTT  51
                                   |..|||||||.|||.||||||||||||||||||||.|||||||||.|||||
Sbjct 2665  TGATTGTCACAAAGTCTTCAGTAACACTACAACAATTGCAAATCATTGGAGAATCCATGATGAAGAGAAATCTT  2738

Query   52  ACAAGTGTAATAAATGTGGCAAATTTTTCAGAGATCGTTCACATATTGCAGGTCATCGGTGAACTCATACTGGA  125
            ...||||||||||||||||||..|||||||||.||.|||||.|.|||||||.||||.||..|.|||||||||||
Sbjct 2739  CTGAGTGTAATAAATGTGGCATGTTTTTCAGACATTGTTCATACATTGCAGTTCATTGGCAACCTCATACTGGA  2812

Query  126  GAGAAACCTTACAAATGTCATGACTGTGCCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGAGAAT  199
            |||||||||||||||||||||||.||.|.|||||||||||||||||||||||||||||||||||  ||||||||
Sbjct 2813  GAGAAACCTTACAAATGTCATGATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAAC--AGGAGAAT  2884

Query  200  TTATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCCTTTGCTTCACGTTCACACGTCATTAGAC  273
            |.|||||||||||||||||||||||||||||||||||||||||||||||.||||||.|||||||.||.||.|||
Sbjct 2885  TCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGAC  2958

Query  274  ATCAGAGAATCTATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCAAGATCACTC  347
            |||||||||||.||||||||||||||||||.|||||||||||||||||||||||||||||||||.||.||||||
Sbjct 2959  ATCAGAGAATCCATACTGGACAGAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTC  3032

Query  348  CATGCAGAACATCAGAAAATTCATTTTTGAGATAACCGTTCCCAATG------------AAATGAGTAT-----  404
            |.||||||||||.|||||||||||||||||||||||.||||||||||            ||.|| ||||     
Sbjct 3033  CTTGCAGAACATGAGAAAATTCATTTTTGAGATAACTGTTCCCAATGCAGCTTTTCAGTAAGTG-GTATGCCTG  3105

Query  405  -------------------------AGCAAACCAT-CAAGCATTAATTG-----------ACAT---TGGAG--  436
                                     .|||||..|| |||..||||..||           ||||   ||.||  
Sbjct 3106  GGAAACATGGTGAGACCCCCGTTTCTGCAAAAAATACAAAAATTAGCTGGGAATGATGGCACATGCCTGCAGTA  3179

Query  437  TCA----------ATTCAGCA-------------TTGA--CT--------------------------------  453
            |||          |.||.|||             ||||  ||                                
Sbjct 3180  TCAACTACTGTGGAGTCTGCAGTGGGAGGATGGCTTGAGCCTGGGAGGTCAAGACTATAGTGAGCTGTAATCAT  3253

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3254  GCTACTGCACTCCAGCATGGTTGACAGAGCAAGATGCTGTCTAAAAAAGAATACTTATTGTAAAGTTTGGGTAC  3327

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3328  AGGAATAATGAAGTCATTGATAGTTTATGAACAGGCTATGGAGTTGATGCCCAAAAGAAATAAACAGTTTGTAA  3401

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3402  ATGAATAACTTATTTTGAGTTGTGACAAGACAATGTTGAAAGTGATGCATGAAGCGGCAGGCAGACCATCCACA  3475

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3476  TCAGTTTTACAGAAAAAAAGTTAATCTTGTTCGTGCTGCAGTGAAGAGAACAGCAAACAGGAGAAACAATAGTC  3549

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3550  AGGAATTCAATAATAGCCTGGTTAACATGATGAAACCCCGTCTCTACTAAAAATACAAAGATTAGCTGGGCACA  3623

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3624  GTGGTGGGCACCTGTAATCCCAGCTACTCAAGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGCGGAAGT  3697

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3698  TTCGATGAGCCGGGATCCTGCCGTTGCACTCCAGCCTGGGCAACAAGAGCAAACCTCTGTCTAAAACAAACAAA  3771

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3772  CAAAAAGGTCTAGCCCCCTCTCCTCCTTTGTCTGCCATCATGGTGTGTGCTTGACTCCACTTCTTGTCATGTCT  3845

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3846  TCTCACAAGACTTTCAGGATTAAGCGGTTTCTGGCCAACAACCAAAAGTAAAATCGTCCGATTTCCCAGTGGAT  3919

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3920  TCGAATGAAAACTGGCAATAAAATCAGGTCCAACTTTAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTAT  3993

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 3994  AAGGAATTGCACGTGAGATGGCACACATATTTATGCTGTGTGAGCATCATAATCACGTTACTTAAGCTGAAAAT  4067

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4068  GTCACTACCATCTGGAGACTTGGACATGTTTTATTGGGAATATATTTTTTTCTCTCTGAATCTGTTATGAACGC  4141

Query  454  --------------------------------------------------------------------------  453
                                                                                      
Sbjct 4142  ATTGGTTGGGTGGGTTCAGTAATAAACATGTGAGACCTTTCATTTCAAAAAAAAAATTTTAATGACATAATAGA  4215

Query  454  -------------  453
                         
Sbjct 4216  TTACCTAAATTTC  4228

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