Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12773
Subject:
XR_387784.1
Aligned Length:
3565
Identities:
488
Gaps:
3009

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGGTGCGTGGTAGTGATGGCGGCGCTCAGCGAGGCTTTCCTGTCACTGGGTACTACTACTCCCAGCCCGCCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAGCCGCCCGAGCCACCCCTCGGTCTTTAGTTTACGAGTGGCAATTTGACTTGCTCTGCTGCATGTCTGGAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GATCGAGGAAAGTGTGGAGACGCCCCGGGGATTTAGGGATCGCAGTTTGGAAAGCAAGCCAGCCAAACAAATAA  222

Query    1  -------------------------ATGAGGCTGCTGGAGAGAATGAGGAAAGACTGGTTCATGGTCGGAATAG  49
                                     |||||||||||||||||...|||||||||.||||||||||||||.||||
Sbjct  223  ACAAAACCCACCCGCCCTAACAAATATGAGGCTGCTGGAGAGGGCGAGGAAAGAATGGTTCATGGTCGGGATAG  296

Query   50  TGCTGGCGATCGCTGGAGCTAAACTGGAGCCGTCCATAGGGGTGAATGGGGGACCACTGAAGCCAGAAATAACT  123
            ||.|||||||||..|..|||||.||.||||||||..|.||.|||||.||||||||||||||||||||.||||||
Sbjct  297  TGGTGGCGATCGGCGCCGCTAAGCTCGAGCCGTCGGTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATAACT  370

Query  124  GTATCCTACATTGCTGTTGCAACAATATTCTTTAACAGTGGACTATCATTGAAAACAGAGGAGCTGACCAGTGC  197
            ||.|||||||||||.||.|||||.||||||||.|||||||||||.|||||.|||||.||||||||||||||.||
Sbjct  371  GTGTCCTACATTGCCGTCGCAACGATATTCTTCAACAGTGGACTGTCATTAAAAACGGAGGAGCTGACCAGCGC  444

Query  198  TTTGGTGCATCTAAAACTGCATCTTTTTATTCAGATCTTTACTCTTGCATTCTTCCCAGCAACAATATGGCTTT  271
            ..|||||||.||.|.||||||||||||.||.||.|||||.||.|||||.||||||||||||.||||||||||.|
Sbjct  445  ACTGGTGCACCTGAGACTGCATCTTTTCATCCAAATCTTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTCT  518

Query  272  TTCTTCAGCTTTTATCAATCACACCCATCAACGAATGGCTTTTAAAAGGTTTGCAGACAGTAGGTTGCATGCCT  345
            ||||||||||.||||||.|||||.||||||||||.|||||||||||||||.||||||||||||||||||||||.
Sbjct  519  TTCTTCAGCTCTTATCAGTCACATCCATCAACGAGTGGCTTTTAAAAGGTCTGCAGACAGTAGGTTGCATGCCA  592

Query  346  CCGCCTGTGTCTTCTGCAGTGATTTTAACCAAGGCAGTTGGTGGAAATGAGGCAGCTGCAATATTTAATTCAGC  419
            ||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  593  CCCCCTGTGTCTTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAAATGAGGCAGCTGCGATATTTAATTCAGC  666

Query  420  CTTTGGAAGTTTTTTGGGCATCGTTATAACACCCCTGCTCCTGCTGCTTTTTCTTGGTTCATCTTCTTCTGTGC  493
            .||||||||||||||||||||.|||.|.||.||..||||||||||||||||.||.||||||||.|||||.||||
Sbjct  667  ATTTGGAAGTTTTTTGGGCATTGTTGTGACTCCGGTGCTCCTGCTGCTTTTCCTCGGTTCATCCTCTTCGGTGC  740

Query  494  CTTTCACATCTATTTTTTCTCAGCTTTTTATGACTGTTGTGGTTCCTCTCATCATTGGACAGGAA---------  558
            ||||.|||||.|||||.||||||||.||||||||.||.|||||||||||..|||||||||||  |         
Sbjct  741  CTTTTACATCCATTTTCTCTCAGCTGTTTATGACGGTGGTGGTTCCTCTTGTCATTGGACAG--ATCGTCCGAC  812

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct  813  GCTACATCAAGGACTGGCTGGAGAGGAAGAAGCCACCATTTGGTGTGGTCAGCAGTAGCGTGCTACTCATGATC  886

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct  887  ATCTACACCACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTGGACAAGTTCAGCCTCATCCTCATACT  960

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct  961  GTTCATAATAGTCTCCGTTCAGCTGAGCTTCATGCTTCTGACTTTCATCTTCTCCACACGGAATCCCAATGCTG  1034

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1035  AAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCCTTGCTCATCTACCACCCAGCTCAGAT  1108

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1109  TCTCCTGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTCCAGGCAGAAGGGAGTGAAGCTGACAA  1182

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1183  GGCCGACAGTGTGACTCGGGTGGCGCCAGCCTTCCTGGAGTGTGTACATATATGTACAGGCTGTACATACAGGG  1256

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1257  GTTCTGAGGACCTGTCCTTGGGGATGCTGCTTTGATGCCTATTTTATTTTTTTACAGAAAAAAATATGATATAC  1330

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1331  CTGTTTAAGTGCCTTACGATGTTTTTGACAAGAGCGTTATTTCCAAAACACACTCTGTTGGCTACTGCCAAGGG  1404

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1405  TAGTACAGTATTTTGGACTCATTTTTTTCCCTAAGGCAGAAAAAAAAGTTCTAGTAAGGGACAAAAGCTAACAC  1478

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1479  GTTTTCTTCGTACTGCCTTTGTGCAGGCAAGACTCTAATAGCACTATAACGTTCAAAATGAGGTCATGCCATCC  1552

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1553  AGAAACCTCCCTCCTGGTGACAGTGAACGATTCCAAAGTCTCATTCACCGCACACTTTGATTCACCGAGTGGTT  1626

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1627  CTTTGTTTCTAAGACTGTGACGGGCTCTTCCTTATCAACTCAGCGGGGGATGCAGATCGCAGAGATGCCGAGAA  1700

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1701  GCGTCAGGTACCTCATTCCTTGACACCGTCTTCTTCCATCCATCCCCGCACACTCCAGAAACACTTCAGTCCCA  1774

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1775  GCACAGAGTGTGTGTGGGGGCTGGGGGGGGGGGGGGGAGTGCAGCTTAGATGTATTATCGGCTGCTTCAGAGAA  1848

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1849  AGTCCTGGTGAGTGTTGCCGTGAACTCGGACAGTGCTTTGGGACGTCTGCAATCGTACCTCAGTATGCTTCTCC  1922

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1923  CTTCCATCATTCCTTAGTTTCCCATTTTACTTACACACAACATCCCCGTGCAACACCCAAATGTCACAGTCAGC  1996

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1997  TGGAGAGTCACAGAAATCAACAGTGGATTATGTGTTCACATTCCACAGCTGGTTCCAAGCACATTCCTGTTACA  2070

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2071  CTGTTCCAAATCGTTCCTGTTGGCAAGACACAACCTGTTACATTAAGCGCACTTGAGACATCTGAGAAGATTTA  2144

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2145  TGAATCATTTGACAGATGTTCACAACATCTCTTAAGAAATCAAATCCTATCGCCTTAGGAGCCAGAGAAAATAA  2218

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2219  ACATGAGGCCGTGGGCATGAGCTAATGTTACATGTCCACACTGCTAGTCAGGTGGAAGAAGGGCTGGTCCAGAA  2292

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2293  GAGCAGGCAGGACCTTCCACTCACCGAGCTGTCAACAGGATGAGTCCGGGAACTGGGCACCAGCTTTGGAAAGG  2366

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2367  ACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAGCTAAAGCAGCATACTGAACAGTGGTGGGAGCGTCTTTC  2440

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2441  CTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCCCAGCAGCTGCCTTTGCTGTTGGTAGTGGGG  2514

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2515  GCTGTGGACCCACAATCAATCATTCCTTCAGAATTCCCTGGGCTTTTCAGTGGTGTTGGGTTATGTTATGGTTA  2588

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2589  GCATTGGTGTTGTAGATGATGGTAGTTTATGTCATAGTTACCGTGGTTGGCGCTGGTGTTATGGTGTTAGCACC  2662

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2663  AGGTCCTCTGTGTCACTGTCTCGGGACTTCATAATTCTGAGCATAGCTATAACACTGGTGTCAGGCCTGGCAGA  2736

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2737  GATCCACGCTGCACGGCCTGTGGGGACCATGCTGGGGACGAGGAGGCAGTGAGTCTGTTTGGTGAGTGTGCTGC  2810

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2811  CTCCATGGAGCACAAAGGTTTTCAAGTCTCACCCCCACAGCCTTGGGGCTTTAGAGGAAGTAGACACTGTCTGC  2884

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2885  CTGCCAGAGTTGTAGACGCAACCCTTCCGTCATTTGAACACTGGTTTCCCCGCCGACCACATCTACCTCTCTGT  2958

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2959  GCGTGACTGCGACAAAGTTCAACTGAAGATGCTATGGTAACTTTTTCTCTTTTGCTTTAAAACTGTCTTTTGTT  3032

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3033  TTCAAACAAAACTGATTTATATCATGAGTTTTGGGAGCTTTAGTAACATGTCTGTGGCTACTTCTCCTTTTACA  3106

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3107  CAAATATGATAGCATATTTTTCATGGTAAGGAAAAAAATAAAATCAAAATTTGCTTTAATTTATGCTCATTAGG  3180

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3181  ATTGAACTGTCAGCTTAAAATACTTTCTATGTTTCTGCACTGCCAATGTCTGTTTTATGTATTTGTTTGTCCAA  3254

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3255  ATGTACCTATAAAAAGAATACATTAGACAGTTATGTTTACTCATTCCAACCTGGAATTGGTTTTAAACGGCTGG  3328

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3329  AACTTTAAGGAACGGCACTGCAGTCTTTACGCATGTTACAAACGTTAAGGTTCTGTGGATTTTTTAAATTCTTC  3402

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3403  CCTATTCTGTTTTAAACTGGCACACCTCTGGTTGACGCTCAGTGTTTATGCTAAAAACCAAATTTTTTCAAAGA  3476

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3477  GATGGCTAAGTAATTAAGTGGGTTATTTATAATGAATGGAAAATTTAAAAAAAAAATTCTATGATTAAACAGAG  3550

Query  559  -------------  558
                         
Sbjct 3551  AGTACTTGACGAA  3563

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