Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12773
Subject:
XR_878921.1
Aligned Length:
3739
Identities:
488
Gaps:
3183

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGGTGCGTGGTAGTGATGGCGGCGCTCAGCGAGGCTTTCCTGTCACTGGGTACTACTACTCCCAGCCCGCCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAGCCGCCCGAGCCACCCCTCGGTCTTTAGTTTACGAGTGGCAATTTGACTTGCTCTGCTGCATGTCTGGAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GATCGAGGAAAGTGTGGAGACGCCCCGGGGATTTAGGGATCGCAGTTTGGAAAGCAAGCCAGCCAAACAAATAA  222

Query    1  -------------------------ATGAGGCTGCTGGAGAGAATGAGGAAAGACTGGTTCATGGTCGGAATAG  49
                                     |||||||||||||||||...|||||||||.||||||||||||||.||||
Sbjct  223  ACAAAACCCACCCGCCCTAACAAATATGAGGCTGCTGGAGAGGGCGAGGAAAGAATGGTTCATGGTCGGGATAG  296

Query   50  TGCTGGCGATCGCTGGAGCTAAACTGGAGCCGTCCATAGGGGTGAATGGGGGACCACTGAAGCCAGAAATAACT  123
            ||.|||||||||..|..|||||.||.||||||||..|.||.|||||.||||||||||||||||||||.||||||
Sbjct  297  TGGTGGCGATCGGCGCCGCTAAGCTCGAGCCGTCGGTCGGAGTGAACGGGGGACCACTGAAGCCAGAGATAACT  370

Query  124  GTATCCTACATTGCTGTTGCAACAATATTCTTTAACAGTGGACTATCATTGAAAACAGAGGAGCTGACCAGTGC  197
            ||.|||||||||||.||.|||||.||||||||.|||||||||||.|||||.|||||.||||||||||||||.||
Sbjct  371  GTGTCCTACATTGCCGTCGCAACGATATTCTTCAACAGTGGACTGTCATTAAAAACGGAGGAGCTGACCAGCGC  444

Query  198  TTTGGTGCATCTAAAACTGCATCTTTTTATTCAGATCTTTACTCTTGCATTCTTCCCAGCAACAATATGGCTTT  271
            ..|||||||.||.|.||||||||||||.||.||.|||||.||.|||||.||||||||||||.||||||||||.|
Sbjct  445  ACTGGTGCACCTGAGACTGCATCTTTTCATCCAAATCTTCACACTTGCCTTCTTCCCAGCAGCAATATGGCTCT  518

Query  272  TTCTTCAGCTTTTATCAATCACACCCATCAACGAATGGCTTTTAAAAGGTTTGCAGACAGTAGGTTGCATGCCT  345
            ||||||||||.||||||.|||||.||||||||||.|||||||||||||||.||||||||||||||||||||||.
Sbjct  519  TTCTTCAGCTCTTATCAGTCACATCCATCAACGAGTGGCTTTTAAAAGGTCTGCAGACAGTAGGTTGCATGCCA  592

Query  346  CCGCCTGTGTCTTCTGCAGTGATTTTAACCAAGGCAGTTGGTGGAAATGAGGCAGCTGCAATATTTAATTCAGC  419
            ||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  593  CCCCCTGTGTCTTCTGCCGTGATTTTAACCAAGGCAGTTGGTGGAAATGAGGCAGCTGCGATATTTAATTCAGC  666

Query  420  CTTTGGAAGTTTTTT-----------------------------------------------------------  434
            .||||||||||||||                                                           
Sbjct  667  ATTTGGAAGTTTTTTGGTAATTATAGACAAGATGGGTTTTTGTTTTGAAGCTCAAGATGACCTTAAACTTCTGC  740

Query  435  -----------------------------------------GGGCATCGTTATAACACCCCTGCTCCTGCTGCT  467
                                                     ||||||.|||.|.||.||..|||||||||||||
Sbjct  741  TTCTAACCCTTTACCTGCGTATCCCATGTGCTGGAACTACAGGGCATTGTTGTGACTCCGGTGCTCCTGCTGCT  814

Query  468  TTTTCTTGGTTCATCTTCTTCTGTGCCTTTCACATCTATTTTTTCTCAGCTTTTTATGACTGTTGTGGTTCCTC  541
            |||.||.||||||||.|||||.||||||||.|||||.|||||.||||||||.||||||||.||.||||||||||
Sbjct  815  TTTCCTCGGTTCATCCTCTTCGGTGCCTTTTACATCCATTTTCTCTCAGCTGTTTATGACGGTGGTGGTTCCTC  888

Query  542  TCATCATTGGACAGGAA---------------------------------------------------------  558
            |..|||||||||||  |                                                         
Sbjct  889  TTGTCATTGGACAG--ATCGTCCGACGCTACATCAAGGACTGGCTGGAGAGGAAGAAGCCACCATTTGGTGTGG  960

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct  961  TCAGCAGTAGCGTGCTACTCATGATCATCTACACCACCTTCTGTGACACCTTCTCCAACCCAAACATCGACCTG  1034

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1035  GACAAGTTCAGCCTCATCCTCATACTGTTCATAATAGTCTCCGTTCAGCTGAGCTTCATGCTTCTGACTTTCAT  1108

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1109  CTTCTCCACACGGAATAACTCGGGGTTCACACCAGCAGACACAGTGGCTATCATCTTCTGCTCCACACACAAGT  1182

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1183  CCCTCACCTTGGGAATCCCAATGCTGAAGATAGTGTTTGCAGGCCATGAGCATCTCTCGCTGATATCCGTGCCC  1256

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1257  TTGCTCATCTACCACCCAGCTCAGATTCTCCTGGGAAGTGTGTTAGTGCCAACAATAAAGTCTTGGATGGTGTC  1330

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1331  CAGGCAGAAGGGAGTGAAGCTGACAAGGCCGACAGTGTGACTCGGGTGGCGCCAGCCTTCCTGGAGTGTGTACA  1404

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1405  TATATGTACAGGCTGTACATACAGGGGTTCTGAGGACCTGTCCTTGGGGATGCTGCTTTGATGCCTATTTTATT  1478

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1479  TTTTTACAGAAAAAAATATGATATACCTGTTTAAGTGCCTTACGATGTTTTTGACAAGAGCGTTATTTCCAAAA  1552

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1553  CACACTCTGTTGGCTACTGCCAAGGGTAGTACAGTATTTTGGACTCATTTTTTTCCCTAAGGCAGAAAAAAAAG  1626

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1627  TTCTAGTAAGGGACAAAAGCTAACACGTTTTCTTCGTACTGCCTTTGTGCAGGCAAGACTCTAATAGCACTATA  1700

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1701  ACGTTCAAAATGAGGTCATGCCATCCAGAAACCTCCCTCCTGGTGACAGTGAACGATTCCAAAGTCTCATTCAC  1774

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1775  CGCACACTTTGATTCACCGAGTGGTTCTTTGTTTCTAAGACTGTGACGGGCTCTTCCTTATCAACTCAGCGGGG  1848

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1849  GATGCAGATCGCAGAGATGCCGAGAAGCGTCAGGTACCTCATTCCTTGACACCGTCTTCTTCCATCCATCCCCG  1922

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1923  CACACTCCAGAAACACTTCAGTCCCAGCACAGAGTGTGTGTGGGGGCTGGGGGGGGGGGGGGGAGTGCAGCTTA  1996

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 1997  GATGTATTATCGGCTGCTTCAGAGAAAGTCCTGGTGAGTGTTGCCGTGAACTCGGACAGTGCTTTGGGACGTCT  2070

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2071  GCAATCGTACCTCAGTATGCTTCTCCCTTCCATCATTCCTTAGTTTCCCATTTTACTTACACACAACATCCCCG  2144

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2145  TGCAACACCCAAATGTCACAGTCAGCTGGAGAGTCACAGAAATCAACAGTGGATTATGTGTTCACATTCCACAG  2218

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2219  CTGGTTCCAAGCACATTCCTGTTACACTGTTCCAAATCGTTCCTGTTGGCAAGACACAACCTGTTACATTAAGC  2292

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2293  GCACTTGAGACATCTGAGAAGATTTATGAATCATTTGACAGATGTTCACAACATCTCTTAAGAAATCAAATCCT  2366

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2367  ATCGCCTTAGGAGCCAGAGAAAATAAACATGAGGCCGTGGGCATGAGCTAATGTTACATGTCCACACTGCTAGT  2440

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2441  CAGGTGGAAGAAGGGCTGGTCCAGAAGAGCAGGCAGGACCTTCCACTCACCGAGCTGTCAACAGGATGAGTCCG  2514

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2515  GGAACTGGGCACCAGCTTTGGAAAGGACTCCAGAAAAGCCTACGCTGAACCCAAACAAGAAGCTAAAGCAGCAT  2588

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2589  ACTGAACAGTGGTGGGAGCGTCTTTCCTGAGCTTCCTGCTTAGTGTTGGAACAGGCATCACGGGTCTCCCCAGC  2662

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2663  AGCTGCCTTTGCTGTTGGTAGTGGGGGCTGTGGACCCACAATCAATCATTCCTTCAGAATTCCCTGGGCTTTTC  2736

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2737  AGTGGTGTTGGGTTATGTTATGGTTAGCATTGGTGTTGTAGATGATGGTAGTTTATGTCATAGTTACCGTGGTT  2810

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2811  GGCGCTGGTGTTATGGTGTTAGCACCAGGTCCTCTGTGTCACTGTCTCGGGACTTCATAATTCTGAGCATAGCT  2884

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2885  ATAACACTGGTGTCAGGCCTGGCAGAGATCCACGCTGCACGGCCTGTGGGGACCATGCTGGGGACGAGGAGGCA  2958

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 2959  GTGAGTCTGTTTGGTGAGTGTGCTGCCTCCATGGAGCACAAAGGTTTTCAAGTCTCACCCCCACAGCCTTGGGG  3032

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3033  CTTTAGAGGAAGTAGACACTGTCTGCCTGCCAGAGTTGTAGACGCAACCCTTCCGTCATTTGAACACTGGTTTC  3106

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3107  CCCGCCGACCACATCTACCTCTCTGTGCGTGACTGCGACAAAGTTCAACTGAAGATGCTATGGTAACTTTTTCT  3180

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3181  CTTTTGCTTTAAAACTGTCTTTTGTTTTCAAACAAAACTGATTTATATCATGAGTTTTGGGAGCTTTAGTAACA  3254

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3255  TGTCTGTGGCTACTTCTCCTTTTACACAAATATGATAGCATATTTTTCATGGTAAGGAAAAAAATAAAATCAAA  3328

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3329  ATTTGCTTTAATTTATGCTCATTAGGATTGAACTGTCAGCTTAAAATACTTTCTATGTTTCTGCACTGCCAATG  3402

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3403  TCTGTTTTATGTATTTGTTTGTCCAAATGTACCTATAAAAAGAATACATTAGACAGTTATGTTTACTCATTCCA  3476

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3477  ACCTGGAATTGGTTTTAAACGGCTGGAACTTTAAGGAACGGCACTGCAGTCTTTACGCATGTTACAAACGTTAA  3550

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3551  GGTTCTGTGGATTTTTTAAATTCTTCCCTATTCTGTTTTAAACTGGCACACCTCTGGTTGACGCTCAGTGTTTA  3624

Query  559  --------------------------------------------------------------------------  558
                                                                                      
Sbjct 3625  TGCTAAAAACCAAATTTTTTCAAAGAGATGGCTAAGTAATTAAGTGGGTTATTTATAATGAATGGAAAATTTAA  3698

Query  559  ---------------------------------------  558
                                                   
Sbjct 3699  AAAAAAAATTCTATGATTAAACAGAGAGTACTTGACGAA  3737

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