Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12929
Subject:
NR_158678.2
Aligned Length:
5518
Identities:
380
Gaps:
5135

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCGGCCCGGCCGACCTCGCGGGCTTGGGCCTGGGCGGGCACCGACGGAGCGGCCCTGGCTGCAGCCTCCCGGCG  74

Query    1  -------------------ATGCGGCTGCTCCTGCTCGTGCCGCTGCTGCTGGCTCCAGCGCCCGGGTCCTCGG  55
                               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCAGCGAAGACAGGCTGAGATGCGGCTGCTCCTGCTCGTGCCGCTGCTGCTGGCTCCAGCGCCCGGGTCCTCGG  148

Query   56  CTCCCAAGGTGAGGCGGCAGAGTGACACCTGGGGACCCTGGAGCCAGTGGAGCCCCTGCAGCCGGACCTGTGGA  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTCCCAAGGTGAGGCGGCAGAGTGACACCTGGGGACCCTGGAGCCAGTGGAGCCCCTGCAGCCGGACCTGTGGA  222

Query  130  GGGGGTGTCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAGGAGAGATGGAGGCTCCAGCTGCGTGGGCCCCGC  203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGGGGTGTCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAGGAGAGATGGAGGCTCCAGCTGCGTGGGCCCCGC  296

Query  204  CCGGAGCCACCGCTCTTGTCGCACGGAGAGCTGCCCCGACGGCGCCCGGGACTTCCGGGCCGAGCAGTGCGCGG  277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCGGAGCCACCGCTCTTGTCGCACGGAGAGCTGCCCCGACGGCGCCCGGGACTTCCGGGCCGAGCAGTGCGCGG  370

Query  278  AGTTCGACGGAGCGGAGTTCCAGGGGCGGCGGTATCGGTGGCTGCCCTACTACAGCGCCCCAAACAAGTGTGAA  351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGTTCGACGGAGCGGAGTTCCAGGGGCGGCGGTATCGGTGGCTGCCCTACTACAGCGCCCCAAACAAGTGTGAA  444

Query  352  CTGAACTGCATTCCCAAAGTGCTGGG---------ATTACAGGCA-----------------------------  387
            |||||||||||||||||.|    |||         |.||||.|||                             
Sbjct  445  CTGAACTGCATTCCCAAGG----GGGAGAACTTCTACTACAAGCACAGGGAGGCTGTGGTTGATGGGACGCCCT  514

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  515  GCGAGCCTGGCAAGAGGGATGTCTGTGTGGATGGCAGCTGCCGGGTTGTCGGCTGTGATCACGAGCTGGACTCG  588

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  589  TCCAAGCAGGAGGACAAGTGTCTGCGGTGTGGGGGTGACGGCACGACCTGCTACCCCGTCGCAGGCACCTTTGA  662

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  663  CGCTAATGACCTCAGCCGAGGCTACAACCAGATCCTCATAGTTCCCATGGGTGCCACCAGCATCCTCATCGACG  736

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  737  AGGCTGCTGCCAGCAGGAACTTCCTGGCTGTGAAGAATGTTCGTGGGGAATACTACCTCAATGGGCACTGGACC  810

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  811  ATCGAGGCGGCCCGGGCCCTGCCAGCAGCCAGCACCATCCTGCATTACGAGCGGGGTGCTGAGGGGGACCTGGC  884

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  885  CCCTGAGCGACTCCATGCCCGGGGCCCCACCTCGGAGCCCCTGGTCATCGAGCTCATCAGCCAGGAGCCCAACC  958

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  959  CCGGTGTGCACTATGAGTACCACCTGCCCCTGCGCCGCCCCAGCCCCGGCTTCAGCTGGAGCCACGGCTCATGG  1032

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1033  AGTGACTGCAGCGCGGAGTGTGGCGGAGGTCACCAGTCCCGCCTGGTGTTCTGCACCATCGACCATGAGGCCTA  1106

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1107  CCCCGACCACATGTGCCAGCGCCAGCCACGGCCAGCTGACCGGCGTTCCTGCAATCTTCACCCTTGCCCGGAGA  1180

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1181  CCAAGCGCTGGAAGGCAGGGCCATGGGCACCCTGCTCAGCCTCCTGTGGAGGAGGCTCCCAGTCCCGCTCCGTG  1254

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1255  TACTGCATCTCGTCTGACGGGGCCGGCATCCAGGAGGCCGTGGAGGAGGCTGAGTGTGCCGGGCTGCCTGGGAA  1328

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1329  GCCCCCTGCCATTCAGGCCTGTAACCTGCAGCGCTGTGCAGCCTGGAGCCCGGAGCCCTGGGGAGAGTGTTCTG  1402

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1403  TCAGTTGTGGCGTTGGCGTCCGGAAGCGGAGCGTTACTTGCCGGGGTGAAAGGGGTTCTTTGCTCCATACCGCA  1476

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1477  GCGTGCTCCTTGGAAGACCGGCCACCTCTGACTGAGCCCTGTGTGCATGAGGACTGCCCCCTCCTCAGTGACCA  1550

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1551  GGCCTGGCATGTTGGCACCTGGGGTCTATGCTCCAAGAGCTGCAGCTCGGGCACTCGGAGGCGACAGGTCATCT  1624

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1625  GTGCCATTGGGCCGCCCAGCCACTGCGGGAGCCTGCAGCACTCCAAGCCTGTGGATGTGGAGCCTTGTAACACG  1698

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1699  CAGCCCTGTCATCTCCCCCAGGAGGTCCCCAGCATGCAGGATGTGCACACCCCTGCCAGCAACCCCTGGATGCC  1772

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1773  GTTGGGCCCTCAGGAGTCCCCTGCCTCAGACTCCAGAGGCCAGTGGTGGGCAGCCCAGGAACACCCCTCAGCCA  1846

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1847  GGGGTGACCACAGGGGAGAACGAGGTGACCCCAGGGGCGACCAAGGCACCCACCTGTCAGCCCTGGGCCCCGCT  1920

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1921  CCCTCTCTGCAGCAGCCCCCATACCAGCAACCCCTGCGGTCGGGCTCAGGGCCCCACGACTGCAGACACAGTCC  1994

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1995  TCACGGGTGCTGCCCCGATGGCCACACGGCATCTCTCGGGCCTCAGTGGCAAGGCTGCCCTGGGGCCCCCTGTC  2068

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2069  AGCAGAGCAGGTACGGGTGCTGCCCTGACAGGGTATCTGTCGCTGAGGGGCCCCATCACGCTGGCTGCACAAAG  2142

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2143  TCGTATGGTGGTGACAGCACCGGGGGCATGCCCAGGTCAAGGGCAGTGGCTTCTACAGTCCACAACACCCACCA  2216

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2217  GCCCCAGGCCCAGCAGAATGAGCCCAGTGAGTGCCGGGGCTCCCAGTTTGGCTGTTGCTATGACAACGTGGCCA  2290

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2291  CTGCAGCCGGTCCTCTTGGGGAAGGCTGTGTGGGCCAGCCCAGCCATGGATTAGCTTGGCAGGTGTGGAGCCCT  2364

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2365  CGTTGGTGCAGGCAGCCCTGGGGCAGTTGGTGCGGCTCTCCTGCTCAGACGACACTGCCCCGGAATCCCAGGCT  2438

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2439  GCCTGGCAGAAAGATGGCCAGCCCATCTCCTCTGACAGGTGTGTGTGACGGCCCCCCGACCTCCTCTGACAGGT  2512

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2513  GTGTGTGACAGCCCCCCGACCTCCTCTGACAGGTTCACGTGACAGCTCCCTCCACCTCCGCTGACAGGCACAGG  2586

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2587  CTGCAGTTCGACGGATCCCTGATCATCCACCCCCTGCAGGCAGAGGACGCGGGCACCTACAGCTGTGGCAGCAC  2660

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2661  CCGGCCAGGCCGCGACTCCCAGAAGATCCAACTTCGCATCATAGGGGGTGACATGGCCGTGCTGTCTGAGGCTG  2734

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2735  AGCTGAGCCGCTTCCCTCAGCCCAGGGACCCAGCTCAGGACTTTGGCCAAGCGGGGGCTGCTGGGCCCCTGGGG  2808

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2809  GCCATCCCCTCTTCACACCCACAGCCTGCAAACAGGCTGCGTTTGGACCAGAACCAGCCCCGGGTGGTGGATGC  2882

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2883  CAGTCCAGGCCAGCGGATCCGGATGACCTGCCGTGCCGAAGGCTTCCCGCCCCCAGCCATCGAGTGGCAGAGAG  2956

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2957  ATGGGCAGCCTGTCTCTTCTCCCAGACACCAGCTGCAGCCTGATGGCTCCCTGGTCATTAGCCGAGTGGCTGTA  3030

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3031  GAAGATGGCGGCTTCTACACCTGTGTCGCTTTCAATGGGCAGGACCGAGACCAGCGATGGGTCCAGCTCAGAGT  3104

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3105  TCTGGGGGAGCTGACAATCTCAGGACTGCCCCCTACTGTGACAGTGCCAGAGGGTGATACGGCCAGGCTATTGT  3178

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3179  GTGTGGTAGCAGGAGAAAGTGTGAACATCAGGTGGTCCAGGAACGGGCTACCTGTGCAGGCTGATGGCCACCGT  3252

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3253  GTCCACCAGTCCCCAGATGGCACGCTGCTCATTTACAACTTGCGGGCCAGGGATGAGGGCTCCTACACGTGCAG  3326

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3327  TGCCTACCAGGGGAGCCAGGCAGTCAGCCGCAGCACCGAGGTGAAGGTGGTCTCACCAGCACCCACCGCCCAGC  3400

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3401  CCAGGGACCCTGGCAGGGACTGCGTCGACCAGCCAGAGCTGGCCAACTGTGATTTGATCCTGCAGGCCCAGCTT  3474

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3475  TGTGGCAATGAGTATTACTCCAGCTTCTGCTGTGCCAGCTGTTCACGTTTCCAGCCTCACGCTCAGCCCATCTG  3548

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3549  GCAGTAGGGATGAAGGCTAGTTCCAGCCCCAGTCCAAAATAGTTCATAGGGCTAGGGAGAAAGGAAGATGGACT  3622

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3623  CTTGGCTTCCTCTCTCTGGCTGGCAAAGGGAGTTATCTTCTGGAATACATTAGCTCTTTCAAAAACCCACCCAG  3696

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3697  TGTTTAGCCTCAACGGCAGCCAGTTACCAGCTTCTCTCTGTAGCCTTCAGCAGTGTTTGCATCTCTGACATAAC  3770

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3771  CACAGGCTGCTGTTTTCAAGAAGAGCAATCTGTTTGGATAAGAAAAACCTTTACTTTACAGCTTCCCTTTATAA  3844

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3845  TTTGTTACACAGGAATAGTTAAATGCATTTGTTTGTTTGTTTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGG  3918

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3919  CTGGAGGGCAATGGCGCGATCTCAGCTCACTGCAACCTCCGTCTCCTGGGTTCTTGATTCTCCTGTGTCAGCCT  3992

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3993  TCTGAGTAGCTAGGATTACAGATGCCTATCACCATGCCTGGGTAATTTTTGTATTTTTAGTTGAGATGGGGTTT  4066

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4067  CACCATGTTGGCCAGGCTGGTCTCGAACTTCTGACCTCAGATGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGG  4140

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4141  GATTACAGGCATGAGCCACCACGCCCAGCCATCAATGCATTTTTTTTATTTTTTTTTTGAGACAGAGTTTCGCA  4214

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4215  CTTCTTGCCCAGGCTGGAGTACAATGGTGCGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGCTT  4288

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4289  CTCCAGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTATGTGCCACCATGCCTGGCTAATTTTGTATTTTTAG  4362

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4363  TAGAGACGGGGTTTCTCCATGTTGGTCAGACTGGTCTTGAACTCCCGACCTCAGGTAATCCGCCCGCCTCGGCC  4436

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4437  TCCCAAAATGCTGGGATTAGAGGTGTGAGCCACTGTGCCCAGCCCATCAATGTGTTTTAAAGCTAGCTGTCAGG  4510

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4511  GTTCCACTTAATTTAAAGCTGGGCAGGGAGATGTGTAATGATTTCAAAGTTAACACCTGTTTGTTTTCTAAAGG  4584

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4585  GCATGCCAAGTCCTGCTGTATCAGGGAAGTATTCTGTGCTAAAATCAGCGATGGTTCATTGCTCTAGTCTCTCT  4658

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4659  CACCCTTCTAGGCAGTGCATCAGTCAGCTCTAAATCTGGTGCAGAGGGTTAACAGCATAACCCTTGTTGGCAAA  4732

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4733  ATGGAATAGATGTTAAGACCTCAAATAGGGATTTGGGATGAAACAGCTGCAGTTAGCACTGTTATCTGAGCATG  4806

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4807  AAAGAACTGGAAACGCTCCTTACGTCGAGATGTTGGACCTTGAAGCCCTCCTGAGGCCAACATGCAAATCTGGC  4880

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4881  TGTGACGGTTCATCTGACACCTGTGTAAAGCTGACCAGCCTGCTCTGTACAGTGACAATGAGGAGCCCCTCTCT  4954

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 4955  TCCTTAAGTAGGAATCTGTGAAGCAAAATGTTTGCTGCCAAAGACAAATCAGACTGTCAGTCATTAAAAACAGC  5028

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 5029  ATTAGCAGGATGAGGATAGCAATGGGGAAGGGTTGTGGGCAATGCAGTAACAGGGAAATGGCTTCAGAAATGGT  5102

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 5103  TTGAGTTGGAAGACAACATTCTTCATCTCTCAGGACTTCTAATTCCTTGATGCTAAAAGAAGAGGCATGGATTC  5176

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 5177  TATGAGCTTCCAAGTCCCTTTCCACTTTAACCTTCTACAAATCTTTCAGAGGACTGCCTAGTAGCAAAGGTTAT  5250

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 5251  TCCTGGACACAGGAAAGACGGGCATTACAGGGACCAAAGCTCTGAAAGGTGACTTTTATTACCAACACACTGGC  5324

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 5325  TGGAAAAGGGACAAACCACATCACGGGTGAGTGATACTTCTCAGTCTTCTCTACTCATTCAACAAAGGAAATGT  5398

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 5399  GGGCTGGGGCAGAGGTCTTTTTTCATTTAATACTGGAAAAATATTGAAGAGCATCCATGTTCACTTATGGCTGG  5472

Query  388  ------------------------------------------  387
                                                      
Sbjct 5473  TTTTGCTATAGAAATTGGAAAATAAAGGCCACTTTTTTGAAA  5514

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.