Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12974
- Subject:
- NM_027256.2
- Aligned Length:
- 2892
- Identities:
- 1386
- Gaps:
- 1377
Alignment
Query 1 ATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGTTCAGC--CA-CAGGAGGAAATTGC 71
||||||||||||||.||.||||||||.||||||||.|||||.||||||||||||| || ||||||||||||||
Sbjct 1 ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGCAGGAGGAAATTGC 74
Query 72 TACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAGATCTGTGTAAAGCTACCTCCC 145
|||.|||||.||||||.|||||||.||.||.||||||||.||.|||||||||||||||||||||||.|||||||
Sbjct 75 TACCAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGCCACCTCCC 148
Query 146 CAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTC 219
||||||||||||||||.|||.|.||||||||||||||.||||||||.||.||.||.||.||.|||||.||||||
Sbjct 149 CAGCAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTGGAGGGGGTAGTC 222
Query 220 AGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAAAATTGCATCATTGTTGGGTTT 293
|||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||.|.|||||.||
Sbjct 223 AGGATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTGCATCACTCTTGGGATT 296
Query 294 ATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCAACATCCTGCAGAATGAAAAGT 367
||||||||||||.||||||||.||.|||||||||||.|||||.||.|||||.|||||.||.|||||||||||||
Sbjct 297 ATTATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAACATACTACAGAATGAAAAGT 370
Query 368 CTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAGCTACCAGAGAATCAAGCTATC 441
||||.|||||.|||||||||||.|||||.|||||||||||||||||||.|||.||||||||.||||||||||.|
Sbjct 371 CTCACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGTAAACTACCAGAAAATCAAGCTACC 444
Query 442 CAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGGTGTAAGAAATAAGTGCCTGCA 515
|||.||||||||||.|||||||||||||||||.|||||||||||.||.|||||||||||||||||||||.||||
Sbjct 445 CAAGTGCGATTAGTGGATGTGGCCTGCAAGCACCTGACAGATACTTCCCATGGTGTAAGAAATAAGTGCTTGCA 518
Query 516 GTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCC 589
.|||||||||||||||||||||||||||||||||||||||||||||.|.||||||..|||||||||||||||.|
Sbjct 519 ATTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATACTGAAGGCTCAGCTGCCAGAGATGTTC 592
Query 590 AGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCAGCTATAAAAGCCATGTTGCAG 663
||||.|||||.|||||..||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||
Sbjct 593 AGAAAATTATCGGGGACCACTTCAGTGACCAAGATCCACGGGTCAGAACAGCAGCTATAAAAGCCATGTTGCAG 666
Query 664 CTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTCTCTGATGACTATGA 737
||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||.||
Sbjct 667 CTCCATGAAAGAGGACTGAAGTTACACCAAACGATTTATAATCAGGCCTGTAAATTGCTCTCTGATGACTACGA 740
Query 738 ACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATCCTGAAAGCATTGTCCCAATTC 811
.||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||.||.||.|||||.|
Sbjct 741 GCAGGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTTGTCAGCCAGCTCTATCCTGAGAGTATAGTTCCAATAC 814
Query 812 CTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCT 885
|.|||||||||||||||||.||..|||||||||||||.|||||.||||||||.||||||||||||||||||||.
Sbjct 815 CGTCTTCTAATGAAGAAATCCGTCTAGTTGATGATGCATTTGGAAAAATTTGCCACATGGTCAGTGATGGCTCC 888
Query 886 TGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGAC 959
|||||||||||||||||.||.|||||.||.||||||||.|||||||||||.||.||||||||||||||||||||
Sbjct 889 TGGGTGGTTCGTGTTCAAGCTGCAAAGCTATTGGGCTCGATGGAGCAAGTTAGCTCTCATTTCTTGGAGCAGAC 962
Query 960 CCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTT 1033
.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 963 TCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGCACTGCACATGAGCGTGCCAAGGAACTTTACAGTT 1036
Query 1034 CGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAAC 1107
||||||||||||||||||||||.||.|||||||||||||||||||||||||||.||||.||.|||||.||||||
Sbjct 1037 CGGGGGAGTTTTCCAGTGGCAGGAAATGGGGAGATGATGCTCCCAAGGAAGAAATAGACACGGGGGCCGTGAAC 1110
Query 1108 TTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGC 1181
.||||.|||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1111 CTGATAGAGTCAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGCATTGCTGC 1184
Query 1182 TGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACA 1255
|||||||||.||.||||||.|.|||||||||||.||||||||||||||.|||||||||||.||.||||||||||
Sbjct 1185 TGTGGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGAAAAGTGCCTTGACTTTCTAGTTGACA 1258
Query 1256 TGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACC 1329
|||||||.|||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||||||.||||||
Sbjct 1259 TGTTCAATGATGAAATTGAGGAAGTGCGTCTGCAGTCCATACACACCATGAGAAAAATCTCTAACAATATCACC 1332
Query 1330 CTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCA 1403
||||||||||||||||||||||||||||||||||||.||||||||||||||||.||||||.|||||||||||||
Sbjct 1333 CTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGATTCATCCAGGGATATTAGAGAGGCTCTTCA 1406
Query 1404 TGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATT 1477
|||||||||||||||.||||||||.|||||||||||||||||||||||||||.||||||||||.||.|||||..
Sbjct 1407 TGAACTCTTATGCTGCACTAATGTCTCAACCAAAGAAGGGATTCATCTTGCACTGGTGGAGCTTCTAAAAAACC 1480
Query 1478 TAACCAAGTACCCTACTGATAGGGACTCCATATGGAAG------------------------------------ 1515
|||||||||||||||||||.||||||||||||||||||
Sbjct 1481 TAACCAAGTACCCTACTGACAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGCAGCCGGCATCCGACCCTC 1554
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1555 GTGCTTCCTCTGGTGCCAGAGCTCTTGAGCACGCACCCATTTTTTGATACTGCTGAACCAGACATGGACGATCC 1628
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1629 AGCTTACATTGCAGTTTTAGTTCTTATCTTCAATGCTGCTAAGACCTGTCCTACAATGCCAGCACTCTTCTCAG 1702
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1703 ACCACACCCTCAGGCACTATGCCTACCTCCGAGACAGCCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGG 1776
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1777 AGAAAACTGGTGTCCTCCACTGTCCCCTCTAACATCACCCCTCATGAAGATCCTTCCCAGCAGTTCCTGCAGCA 1850
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1851 GAGCCTTGAAAGGGTGTATAGTGTTCAGCACCTAGATCCTCAGGGGGCCCAAGAGCTGCTGGAATTCACCATCA 1924
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1925 GAGATCTGCAAAGACTTGGAGAGCTTCAGTCTGAATTGGCAGGAGTAGCTGACTTCTCTGCCACCTATCTTCAG 1998
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1999 TGTCAACTGCTCCTCATTAAGGCCTTGCAGGAAAAGCTGTGGAATGTGGCTGCCCCCTTGTATCTAAAGCAGAG 2072
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2073 TGATTTGGCCTCAGCAGCAGCAAAACAGATCATGGAGGAAACCTACAAAATGGAGTTTATGTACAGTGGTGTGG 2146
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2147 AAAACAAGCAGGTTGTGATCATACAGCACATGAGGCTTCAGGCCAAAGCTCTGCAACTCATAGTAACTGCACGA 2220
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2221 ACTACTCGAGGAGTAGACCCCTTATTTGGAATGTGTGAAAAATTTTTACAGGAAGTGGATTTTTTTCAGAGGTG 2294
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2295 TTTCATTGCGGATTTGCCCCACCTTCAAGATAGCTTTGTGGACAAACTCCTTGATCTTATGCCCCGACTCATGG 2368
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2369 CATCTAAACCTGTTGAAGTGATCAAAATTCTGCAGACAATGCTGCGGCAGAGCACCTTCTTACATCTTCCGCTT 2442
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2443 CCAGAGCAGATACACAAAGCCTCAGCCACCATTATTGAGCCGGCAGGAGAGTCAGACAATCCTTTGCGGTTTAC 2516
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2517 ATCTGGGTTGGTGGTAGCCTTGGATGTGGATGCAACCCTGGAACATGTGCAAGACCCCCAGAACACTGTCAAGG 2590
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2591 TTCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATCCACCCCAAGCCAGCAGATTTCCGGAATCCTGGCCCA 2664
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2665 GGACGGCACCGTCTCCTCACTCAGGTGTACCTCTCCCATACTGCCTGGACAGAACCATGCCAAGTGGAAGTGAG 2738
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2739 GCTATTGCTGGCCTACAACTCCGGTGCACGAATTCCAAAATCTCCATGGCTGGAGGGTAGTGAGATGTCACCAC 2812
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2813 AGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCTGTGAAAGTCTACATAATGCCCAAGCCTGCA 2886
Query 1516 ------ 1515
Sbjct 2887 AGACGC 2892
