Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12974
- Subject:
- NR_146905.1
- Aligned Length:
- 3669
- Identities:
- 952
- Gaps:
- 2637
Alignment
Query 1 ATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGTTCAGCCACAGGAGGAAATTGCTAC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAGATCTGTGTAAAGCTACCTCCCCAG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTCAGG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAAAATTGCATCATTGTTGGGTTTATT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 ATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCA--TCAA----CATCCTGCAGAATGAAA 364
||..||.||| .|..||||||.| |.||||| ||.| |.||||| |.||
Sbjct 1 ------GAGGGCGGGA---GCGGCAGACTCC---------GCTGCCAGCTCTACTGGCGTCCTG------GCAA 50
Query 365 AG---------------TCTCATCAAGTCCTAGCTCAACTGCTGGATACT------TTGCTTGCAATTGGCACT 417
.| .||| |..|||| |||| ||.|.|| || ||.||||| ||
Sbjct 51 GGGCAGCGCCGAGGGGCGCTC--CCGGTCC-AGCT---CTCCCGG---CTCGGGGGTTCCTTGC--------CT 107
Query 418 AAGCTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCA------AGCATCTG---ACAGA 482
|.|| .||||||...|..|||..| ||| .|..|..|.||||||||||| .||| ||| .|.||
Sbjct 108 AGGC-GCCAGAGCCCCGGGCTCCC----TGC-CTCGGCCGCTGTGGCCTGCATAGAGCGGCA-CTGCGCGCGGA 174
Query 483 TACGTCTCATGGTGTAAGA-AATAA--------GTGCC--------TGCAGTTACTTGGCAATCTTGGCTCTTT 539
..|| |||| .||| ||.|| |||.| ||||| .||| |.||..
Sbjct 175 GGCG----ATGG---GAGAGAAGAAGGAGGGCGGTGGCGGGGGTGATGCAG-----CGGC--------CGCTGA 228
Query 540 GGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCA 613
|| |||.| ||||..|.|| |.||||| ||.| ||| ||.||
Sbjct 229 GG------GTGGC---------GCAGGGGCCC---CGGCCAG------CCCG---------GGG-----CTGCA 264
Query 614 GTGACCAAGACCCACGTGTCAGAACAGCAGCTATAAAAGC-CAT-GTTGCAGCTCCATGAAAGAGGACTGAAAT 685
| || ||| |||| |||||..|.|||| ||| | |||.|||||| ||..|
Sbjct 265 G----CA--------GTG-CAGA----CAGCTCCAGAAGCTCATCG--GCATCTCCAT----------TGGCA- 308
Query 686 TACACCAAACAATTTATAATCAGGCCTGTAAATTACTC--TCTGATGACTATGAACAAGTGCGCAGTGCTGCAG 757
||||| |.| .|||...|| |||||||||.|| |
Sbjct 309 -----------------------GCCTG-------CGCGGGCTGGGCAC------CAAGTGCGCTGT------G 340
Query 758 TCCAGCTTATCTGGGTCGTCAGTCAGC--------TCTATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATG 823
||||.| |.|.|||...||| ...|.|||| .||||||||||||||||||||||||||||
Sbjct 341 TCCAAC--------GACCTCACCGAGCAGGAGATACGGACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATG 405
Query 824 AAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGT 897
|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||.|
Sbjct 406 AAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCAT 479
Query 898 GTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAA 553
Query 972 GCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTT 1045
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 554 GCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTT 627
Query 1046 CCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCA 1119
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCA 701
Query 1120 GGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCT 775
Query 1194 CTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATG 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATG 849
Query 1268 AAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGAT 1341
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AAATTGAGGAAGTACGTCTGCAGTCCATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGAT 923
Query 1342 CAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATG 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 CAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATG 997
Query 1416 CTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACC 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACC 1071
Query 1490 CTACTGATAGGGACTCCATATGGAAG------------------------------------------------ 1515
||||||||||||||||||||||||||
Sbjct 1072 CTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTG 1145
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1146 GTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGC 1219
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1220 AGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAATGCGAGCATTGTTCTCAGGCACTATGCCTA 1293
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1294 CCTCCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTGCCAGGTAGAAAACTGGTGTCATCAGCTGTTT 1367
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1368 CTCCCAGCATCATACCTCAAGAGGATCCTTCGCAGCAGCTCCTGCAGCAGAGCCTTGAAGGAGTGTGTAGTCTT 1441
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1442 CAGCACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGGAAT 1515
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1516 GTAGCTGCCCCTTCGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAGACTTTACCCCTTATTTG 1589
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1590 GGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTTCAGAGGACACATGAACCATTAACAAGAAAAATATTT 1663
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1664 AAATAAGAAACTCACCAAGCCAGGAGAATAATGAATACCTGGATGTGCCCCCTAGGAATCTGGATCTCTTCTCT 1737
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1738 TTTCCCCACCCTGCCCTCAACTCCCCTTACATACATACAGCCTGGATCACAAGACCCAAGAAAACCATTCCACC 1811
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1812 AGCTGCTGAGAGAAGAGCCACAAAAGGACCCAGAACTTCTCCATGGCTACCTTAGAGCACCCTAAAATGTGCTA 1885
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1886 ACAGCCATTGTTAGCATTCAGGAGCTGTTTATTCCCATTTTCACACTACACTAAAGAATTTTAAACAATCACAA 1959
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1960 GATAGACTGGCTGGAAGTTGGTGCTTGGAACATCCCACGTCACCTAAAAGCACAGTGCTGCAATCTCAGAAACC 2033
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2034 CCAGGCTCAGCCAGCAGAGAGAGGAGAAGCAGCTGGACATTGGAGACTATGATTGGACATTAGAGAGAAGGAGC 2107
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2108 TTGACTTCACAGAGAAAGCATGATGGAATAATTTCAGAGAAAAGTCTGGCCAGGGATGACCAGACTTCAGGGGA 2181
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2182 AGATAATCTTGCTCAATATCCTTTTCTGCTCCCCTTCCTGCTGAGAGTCACTTTGATTGGCAATAAAATATCTC 2255
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2256 ACATTTACCATCTTCAATTTGTTCTTGCAACCTCATTCCTCCTGGATGCCAGACAAGAACTCAGGTGCCATGAG 2329
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2330 TATGGGTGCAAAAGGCTATCACACTGTCCCTCCACTGAGCTGTTAACACTTAAGCTATCCATGGACAGCAAAGC 2403
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2404 TAAAAGGGCACTGTAAGAGTCCTTCTGGGGTTTCAGAAGTCATGAGCATCCCCCAGATGCTGCCATGGGGCCAG 2477
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2478 TACAGAGTTTGCTCCTGCCAGAGTCCAAAAATGTCTCAGCTCCTGCACCCAGTCACCTGCATGCTCCCCCTCCC 2551
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2552 ACAAGTGGTGGAGCACAGTGGGCTGAGTGAGTGGAGTTTGCCCCTGCCAGCACCCGTGCACTCCAGTTCCCACC 2625
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2626 TGTGAAGGTGTCAGAGAGATATTCTGCTTAAAAATCAGAGTGACTCCATCTTAAATAGCAGCTGGGTGAGATAA 2699
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2700 GGCTGAGACCTACTGGGCTGCATTCCCAGGAGGTTAGGCATTCTAACCTTCTATCAGGATGAGATAGAAGGCCA 2773
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2774 GCATAAGATATAGGTCACGAAGACTCTGCTGATAAAACAGGATGTGGTTTAAATAAATGCCAGCCAGAACCCAC 2847
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2848 CAAAACCAAGATGGTGATGCTCATTCTCACTGCTCATTATATGCCAGTATAATGCATTTGCATGCAAAAAGACT 2921
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2922 CTACCACCAGTGCCATGACAGCTTACAGATGCCATGGCAAGATCTGGAAGTTACCCTGTAGCCTCTAAAATGGG 2995
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2996 GAAGAACCCTCAGTTCTGGAAAATTTCTGCCCCTTTCCTGAAAAACTCATGAATAATCTACCCTTTGTTTAGCA 3069
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3070 TATAATCAAGAAACAACTATAAGTATAGTCAATCGAGCAGCCAATCTCACCGCTCTGTCTATGGAGTAGTCATT 3143
Query 1516 ------------------------------------------- 1515
Sbjct 3144 CTTTTATTTACATCTCTAATAAAATTGCTTTCACTTTACTGTA 3186
