Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12974
- Subject:
- NR_146906.1
- Aligned Length:
- 4265
- Identities:
- 1018
- Gaps:
- 3172
Alignment
Query 1 ATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGTTCAGCCACAGGAGGAAATTGCTAC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAGATCTGTGTAAAGCTACCTCCCCAG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTCAGG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAAAATTGCATCATTGTTGGGTTTATT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 ATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCA--TCAA----CATCCTGCAGAATGAAA 364
||..||.||| .|..||||||.| |.||||| ||.| |.||||| |.||
Sbjct 1 ------GAGGGCGGGA---GCGGCAGACTCC---------GCTGCCAGCTCTACTGGCGTCCTG------GCAA 50
Query 365 AG---------------TCTCATCAAGTCCTAGCTCAACTGCTGGATACT------TTGCTTGCAATTGGCACT 417
.| .||| |..|||| |||| ||.|.|| || ||.||||| ||
Sbjct 51 GGGCAGCGCCGAGGGGCGCTC--CCGGTCC-AGCT---CTCCCGG---CTCGGGGGTTCCTTGC--------CT 107
Query 418 AAGCTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCA------AGCATCTG---ACAGA 482
|.|| .||||||...|..|||..| ||| .|..|..|.||||||||||| .||| ||| .|.||
Sbjct 108 AGGC-GCCAGAGCCCCGGGCTCCC----TGC-CTCGGCCGCTGTGGCCTGCATAGAGCGGCA-CTGCGCGCGGA 174
Query 483 TACGTCTCATGGTGTAAGA-AATAA--------GTGCC--------TGCAGTTACTTGGCAATCTTGGCTCTTT 539
..|| |||| .||| ||.|| |||.| ||||| .||| |.||..
Sbjct 175 GGCG----ATGG---GAGAGAAGAAGGAGGGCGGTGGCGGGGGTGATGCAG-----CGGC--------CGCTGA 228
Query 540 GGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCA 613
|| |||.| ||||..|.|| |.||||| ||.| ||| ||.||
Sbjct 229 GG------GTGGC---------GCAGGGGCCC---CGGCCAG------CCCG---------GGG-----CTGCA 264
Query 614 GTGACCAAGACCCACGTGTCAGAACAGCAGCTATAAAAGC-CAT-GTTGCAGCTCCAT--GAA-----AGAGGA 678
| || ||| |||| |||||..|.|||| ||| | |||.|||||| |.| .|.||.
Sbjct 265 G----CA--------GTG-CAGA----CAGCTCCAGAAGCTCATCG--GCATCTCCATTGGCAGCCTGCGCGGG 319
Query 679 CTG------AAAT------------------TACACCAAACAATTTATA---ATC----AGGCCTGTAAATTAC 721
||| ||.| | ||||.|.||....||| |.| |||||||||||||||
Sbjct 320 CTGGGCACCAAGTGCGCTGTGTCCAACGACCT-CACCGAGCAGGAGATACGGACCCTGGAGGCCTGTAAATTAC 392
Query 722 TCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATCCTGAA 795
||||||||||||||||||||||||||||||||||||||.|||||||||||||.|||||||||||||||||||||
Sbjct 393 TCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCTAGCTTATCTGGGTTGTCAGTCAGCTCTATCCTGAA 466
Query 796 AGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGTCACAT 869
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 467 AGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATTTGTCACAT 540
Query 870 GGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTC 943
||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTC 614
Query 944 ATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 ATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCC 688
Query 1018 AAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAAGTAGA 1091
|||||||||||||||||.||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 689 AAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAAGAAGTAGA 762
Query 1092 TACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATG 836
Query 1166 AGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTT 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTT 910
Query 1240 GATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGAAAAAT 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 911 GATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATGAGAAAAAT 984
Query 1314 CTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATA 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 CTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATA 1058
Query 1388 TTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTG 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTG 1132
Query 1462 GAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAG-------------------- 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGAAG 1206
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1207 TCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAAC 1280
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1281 CAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAATG 1354
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1355 CGAGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTGCCA 1428
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1429 GGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCCTTCGCAGCAGCTCCTGCA 1502
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1503 GCAGAGCCTTGAAGGAGTGTGTAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCA 1576
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1577 TCAGGCCTTGCAGGAAAAGTCGTGGAATGTAGCTGCCCCTTCGTATTTGAAGCAGAGTGATTTGGCCTCAGCAG 1650
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1651 CAGCGAAACAGAGACCTACAAAATGGAATTCATGTAGAGTGGTGTGGAGAATAAGCAGGTGGTGATTATACATC 1724
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1725 ACATGAGGCTGCAGGCCAAAGCTTTGCAACTTATAATAACAGCACGAACTACACGAGGACTTTACCCCTTATTT 1798
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1799 GGGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTTCAGAGGTATTTCATCGCTGATTTGCCCCACTTGCA 1872
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1873 GGACAGCTTTGTGGACAAACTCCTTGACCTTATGCCCCGATTCATGACATCCAAACCTGCAGAAGTGGTCAAAA 1946
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1947 TTCTACAGACCATGCTGCGACAGAGTGCCTTTCTGCATCTCCCACTTCCAGAGCAGATCCACAAAGCCTCAGCC 2020
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2021 ACCATCATTGAGCCAGCAGGCGAGTCAGACAACCCTTTGCGGTTTACCTCTGGGTTGGTGGTTGCCCTGGATGT 2094
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2095 TGATGCAACCCTGGAGCATGTGCAGGATCCTCAGAACACTGTTAAGGTCCAGGTCCCAGAGAGCTACTCACTGC 2168
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2169 ATGTGTCTTTGACCTGCTGTTGATTCATCTCCTCTGCTAAGAAGGTGGCTGATGGCTGGGCTATTTACACCTAG 2242
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2243 GAGGGTGTTCCAGGCCAGGCCCCAGGGAGCCTAAAATAATCAAAAAGGACACATGAACCATTAACAAGAAAAAT 2316
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2317 ATTTAAATAAGAAACTCACCAAGCCAGGAGAATAATGAATACCTGGATGTGCCCCCTAGGAATCTGGATCTCTT 2390
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2391 CTCTTTTCCCCACCCTGCCCTCAACTCCCCTTACATACATACAGCCTGGATCACAAGACCCAAGAAAACCATTC 2464
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2465 CACCAGCTGCTGAGAGAAGAGCCACAAAAGGACCCAGAACTTCTCCATGGCTACCTTAGAGCACCCTAAAATGT 2538
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2539 GCTAACAGCCATTGTTAGCATTCAGGAGCTGTTTATTCCCATTTTCACACTACACTAAAGAATTTTAAACAATC 2612
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2613 ACAAGATAGACTGGCTGGAAGTTGGTGCTTGGAACATCCCACGTCACCTAAAAGCACAGTGCTGCAATCTCAGA 2686
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2687 AACCCCAGGCTCAGCCAGCAGAGAGAGGAGAAGCAGCTGGACATTGGAGACTATGATTGGACATTAGAGAGAAG 2760
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2761 GAGCTTGACTTCACAGAGAAAGCATGATGGAATAATTTCAGAGAAAAGTCTGGCCAGGGATGACCAGACTTCAG 2834
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2835 GGGAAGATAATCTTGCTCAATATCCTTTTCTGCTCCCCTTCCTGCTGAGAGTCACTTTGATTGGCAATAAAATA 2908
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2909 TCTCACATTTACCATCTTCAATTTGTTCTTGCAACCTCATTCCTCCTGGATGCCAGACAAGAACTCAGGTGCCA 2982
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2983 TGAGTATGGGTGCAAAAGGCTATCACACTGTCCCTCCACTGAGCTGTTAACACTTAAGCTATCCATGGACAGCA 3056
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3057 AAGCTAAAAGGGCACTGTAAGAGTCCTTCTGGGGTTTCAGAAGTCATGAGCATCCCCCAGATGCTGCCATGGGG 3130
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3131 CCAGTACAGAGTTTGCTCCTGCCAGAGTCCAAAAATGTCTCAGCTCCTGCACCCAGTCACCTGCATGCTCCCCC 3204
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3205 TCCCACAAGTGGTGGAGCACAGTGGGCTGAGTGAGTGGAGTTTGCCCCTGCCAGCACCCGTGCACTCCAGTTCC 3278
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3279 CACCTGTGAAGGTGTCAGAGAGATATTCTGCTTAAAAATCAGAGTGACTCCATCTTAAATAGCAGCTGGGTGAG 3352
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3353 ATAAGGCTGAGACCTACTGGGCTGCATTCCCAGGAGGTTAGGCATTCTAACCTTCTATCAGGATGAGATAGAAG 3426
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3427 GCCAGCATAAGATATAGGTCACGAAGACTCTGCTGATAAAACAGGATGTGGTTTAAATAAATGCCAGCCAGAAC 3500
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3501 CCACCAAAACCAAGATGGTGATGCTCATTCTCACTGCTCATTATATGCCAGTATAATGCATTTGCATGCAAAAA 3574
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3575 GACTCTACCACCAGTGCCATGACAGCTTACAGATGCCATGGCAAGATCTGGAAGTTACCCTGTAGCCTCTAAAA 3648
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3649 TGGGGAAGAACCCTCAGTTCTGGAAAATTTCTGCCCCTTTCCTGAAAAACTCATGAATAATCTACCCTTTGTTT 3722
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3723 AGCATATAATCAAGAAACAACTATAAGTATAGTCAATCGAGCAGCCAATCTCACCGCTCTGTCTATGGAGTAGT 3796
Query 1516 ----------------------------------------------- 1515
Sbjct 3797 CATTCTTTTATTTACATCTCTAATAAAATTGCTTTCACTTTACTGTA 3843
