Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13287
Subject:
NM_173004.3
Aligned Length:
3081
Identities:
1009
Gaps:
1956

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGGTTGCCATGGGAACTGCTAGTGCTGCAATCATTCATGTTGTGCCTTGCAGATGACTACACACTGCATGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCAGTTTTTGTTCAAGAACCAAGTCATGTCATGTTTCCTTTGGATTCTGAGGAGAAAAAAGTGAAACTCAGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGAAGTTAAAGGGAATCCAAAACCTCACATCAGGTGGAAGATAAATGGAACAGATGTTGACATTGGTATGGAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTCCGCTACAGTGTTGTTGACGGCAGCTTGTTGATCAATAACCCCAATAAAACCCAAGATGCTGGAACGTACCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGCATAGCAACAAACTCATTTGGAACAATTGTAAGCAGAGAAGCAAAGCTTCAGTTTGCTTATCTTGAAAACT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTAAGACAAGAACAAGAAGCACTGTGTCAGTCCGTCGAGGTCAGGGAATGGTCCTTCTGTGCGGCCCGCCACCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CATTCTGGAGAGCTGAGCTATGCCTGGATCTTCAATGAATACCCTTCCTATCAGGATAACCGCCGCTTCGTTTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCAAGAGACTGGGAATCTGTATATTGCCAAAGTGGAAAAATCTGATGTTGGTAATTACACCTGTGTAGTTACCA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACACTGTGACCAACCACAAGGTCCTGGGACCGCCCACACCACTAATCCTGAGAAATGATGGGGTGATGGGTGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TATGAGCCCAAAATAGAAGTACAGTTTCCAGAAACCGTCCCGGCTGAGAAAGGAACAACAGTCAAACTGGAATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTGCCTTAGGAAATCCAGTCCCAACTATTCTATGGCGAAGAGCTGATGGCAAGCCAATAGCAAGGAAAGCCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAAGACATAAGTCGAATGGAATTCTGGAAATTCCCAATTTTCAGCAGGAAGATGCCGGTTCATATGAATGTGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCTGAAAACTCCAGAGGCAAAAACGTAGCCAAGGGACAGTTGACTTTTTATGCTCAACCTAACTGGGTTCAAAT  962

Query    1  ----------------------ATGGAAGAAAATGTCTTTTGGGAATGTAAAGCAAATGGAAGGCCTAAGCCTA  52
                                  ||||||||.|.||||||.||||||||||||||||||||.||||||||.||||
Sbjct  963  AATAAATGATATCCACGTGGCCATGGAAGAGAGTGTCTTCTGGGAATGTAAAGCAAATGGGAGGCCTAAACCTA  1036

Query   53  CATACAAGTGGCTAAAAAATGGCGAACCTCTGCTAACTCGGGATAGAATTCAAATTGAGCAAGGAACACTCAAC  126
            |.||||..||||||||||||||.||.||.|||.||||.|||||||||||.|||||.||||||||||||||||||
Sbjct 1037  CCTACAGATGGCTAAAAAATGGTGACCCACTGTTAACACGGGATAGAATACAAATCGAGCAAGGAACACTCAAC  1110

Query  127  ATAACAATAGTGAACCTCTCAGATGCTGGCATGTATCAGTGTTTGGCAGAGAATAAACATGGAGTTATCTTTTC  200
            ||||||||||||||.||||||||||||||||||||.||||||.|||||||.|||||||||||||||||||||||
Sbjct 1111  ATAACAATAGTGAATCTCTCAGATGCTGGCATGTACCAGTGTGTGGCAGAAAATAAACATGGAGTTATCTTTTC  1184

Query  201  CAACGCAGAGCTTAGTGTTATAGCTGTAGGTCCAGATTTTTCAAGAACACTCTTGAAAAGAGTAACTCTTGTCA  274
            ||.|||.|||||||||||.|||||||.|.|||||||||||||..||||||||||.|||||||||||.|||||||
Sbjct 1185  CAGCGCTGAGCTTAGTGTAATAGCTGAAAGTCCAGATTTTTCCCGAACACTCTTAAAAAGAGTAACACTTGTCA  1258

Query  275  AAGTGGGAGGTGAAGTTGTCATTGAGTGTAAGCCAAAAGCGTCTCCAAAACCTGTTTACACCTGGAAGAAA-GG  347
            ||||||||||||||||||||||||||||.|||||||||||.||.||||.||||||.||||||||| ||||| ||
Sbjct 1259  AAGTGGGAGGTGAAGTTGTCATTGAGTGCAAGCCAAAAGCATCCCCAAGACCTGTCTACACCTGG-AGAAAGGG  1331

Query  348  AAGGGATATATTAAAAGAAAATGAAAGAATTACCATTTCTGAAGATGGAAACCTCAGAATCATCAACGTTACTA  421
            |||.||.|||||||.|||||||||||||||||||||||||||||||||.|||||||||||||||||.||.||||
Sbjct 1332  AAGAGAAATATTAAGAGAAAATGAAAGAATTACCATTTCTGAAGATGGGAACCTCAGAATCATCAATGTGACTA  1405

Query  422  AATCAGACGCTGGGAGTTATACCTGTATAGCCACTAACCATTTTGGAACTGCTAGCAGTACTGGAAACTTGGTA  495
            ||||.||.|||||.|||||.|||||.||||||||.|||||||||||||||||.|||||||||||.||..||.|.
Sbjct 1406  AATCTGATGCTGGAAGTTACACCTGCATAGCCACGAACCATTTTGGAACTGCCAGCAGTACTGGGAATGTGATT  1479

Query  496  GTGAAAGATCCAACAAGGGTAATGGTACCCCCTTCCAGTATGGATGTCACTGTTGGAGAGAGTATTGTTTTACC  569
            ||||||||.|||||||.|||.|||||.||.||||||||.||||||||||||||.|||||.||.||||||.|.||
Sbjct 1480  GTGAAAGACCCAACAAAGGTGATGGTTCCTCCTTCCAGCATGGATGTCACTGTAGGAGAAAGCATTGTTCTTCC  1553

Query  570  GTGCCAGGTAACGCATGATCACTCGCTAGACATCGTGTTTACTTGGTCATTTAATGGACACCTGATAGACTTTG  643
            .|||||||||||.|||||||||||.||.|||||.||||||||.|||.||||||||||||||.||||||||||||
Sbjct 1554  ATGCCAGGTAACACATGATCACTCCCTGGACATTGTGTTTACGTGGACATTTAATGGACACTTGATAGACTTTG  1627

Query  644  ACAGAGATGGGGACCACTTTGAAAGAGTTGGAGG---GGATTCAGCTGGTGATTTGATGATCCGAAACATCCAA  714
            |||..|||||.|||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct 1628  ACAAGGATGGAGACCACTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATGATCCGAAACATCCAA  1701

Query  715  CTGAAGCATGCTGGGAAATATGTCTGCATGGTCCAAACAAGTGTGGACAGGCTATCTGCTGCTGCAGACCTGAT  788
            |||||||||||||||||.||||||||||||||||||||||||||.||||..||.||||.||||||.||||||||
Sbjct 1702  CTGAAGCATGCTGGGAAGTATGTCTGCATGGTCCAAACAAGTGTAGACAAACTCTCTGTTGCTGCGGACCTGAT  1775

Query  789  TGTAAGAGGTCCTCCAGGTCCCCCAGAGGCTGTGACAATAGACGAAATCACAGATACCACTGCTCAGCTCTCCT  862
            |||||||||||||||||||||.||.|||||||||||.|||||.|||||||||||.||||||||||||||.||.|
Sbjct 1776  TGTAAGAGGTCCTCCAGGTCCTCCTGAGGCTGTGACCATAGATGAAATCACAGACACCACTGCTCAGCTTTCTT  1849

Query  863  GGAGACCCGGGCCTGACAATCACAGCCCCATCACCATGTATGTCATTCAAGCCAGGACTCCGTTCTCCGTGGGC  936
            |||||||.||.||||||||.|||||||||||||||||||||||.||.|||||.||||||||.||||||||||||
Sbjct 1850  GGAGACCAGGACCTGACAACCACAGCCCCATCACCATGTATGTTATCCAAGCTAGGACTCCATTCTCCGTGGGC  1923

Query  937  TGGCAAGCAGTCAGTACAGTCCCAGAACTCATTGATGGGAAGACATTCACAGCGACCGTGGTGGGTTTGAACCC  1010
            |||||||||||||.||||||.|||||.|||.|.||.|||||||||||||||||.||.||||||||||||||.||
Sbjct 1924  TGGCAAGCAGTCAATACAGTTCCAGATCTCGTCGACGGGAAGACATTCACAGCAACTGTGGTGGGTTTGAATCC  1997

Query 1011  TTGGGTTGAATATGAATTCCGCACAGTTGCAGCCAACGTGATTGGGATTGGGGAGCCCAGCCGCCCCTCAGAGA  1084
            ||||||||||||||||||||||||.||||||||.||.||||||||.||||||||.||||||||.||||||||||
Sbjct 1998  TTGGGTTGAATATGAATTCCGCACTGTTGCAGCTAATGTGATTGGCATTGGGGAACCCAGCCGGCCCTCAGAGA  2071

Query 1085  AACGGAGAACAGAAGAAGCTCTCCCCGAAGTCACACCAGCGAATGTC--AGTGGTGGCGGAGGCAGCAAATCTG  1156
            |||||||.||||||||.||||       || .||||..|.||   ||  ||.|||                   
Sbjct 2072  AACGGAGGACAGAAGAGGCTC-------AG-AACACTGGGGA---TCAGAGAGGT-------------------  2115

Query 1157  AACTGGTTATAACCTGGGAGACGGTCCCTGAGGAATTACAGAATGGTCGTGGCTTTGGTTATGTGGTGGCCTTC  1230
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1231  CGGCCCTACGGTAAAATGATCTGGATGCTGACAGTGCTGGCCTCAGCTGACGCCTCTAGATACGTGTTCAGGAA  1304
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1305  TGAGAGCGTGCACCCCTTCTCTCCCTTTGAGGTTAAAGTAGGTGTCTTCAACAACAAAGGAGAAGGCCCTTTCA  1378
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1379  GTCCCACCACGGTGGTGTATTCTGCAGAAGAAGAACCCACCAAACCACCAGCCAGTATCTTTGCCAGAAGTCTT  1452
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1453  TCTGCCACAGATATTGAAGTTTTCTGGGCCTCCCCACTGGAGAAGAATAGAGGACGAATACAAGGTTATGAGGT  1526
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1527  TAAATATTGGAGACATGAAGACAAAGAAGAAAATGCTAGAAAAATACGAACAGTTGGAAATCAGACATCAACAA  1600
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1601  AAATCACGAACTTAAAAGGCAGTGTGCTGTATCACTTAGCTGTCAAGGCATATAATTCTGCTGGGACAGGCCCC  1674
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1675  TCTAGTGCAACAGTCAATGTGACAACCCGAAAGCCACCACCAAGTCAACCCCCCGGAAACATCATATGGAATTC  1748
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1749  ATCAGACTCCAAAATTATCCTGAATTGGGATCAAGTGAAGGCCCTGGATAATGAGTCGGAAGTAAAAGGATACA  1822
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1823  AAGTCTTGTACAGATGGAACAGACAAAGCAGCACATCTGTCATTGAAACAAATAAAACATCGGTGGAGCTTTCT  1896
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1897  TTGCCTTTCGATGAAGATTATATAATAGAAATTAAGCCATTCAGCGACGGAGGAGATGGCAGCAGCAGTGAACA  1970
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 1971  AATTCGAATTCCAAAGATATCAAATGCCTACGCGAGAGGATCTGGGGCTTCCACTTCGAATGCATGTACGCTGT  2044
                                                                                      
Sbjct 2116  --------------------------------------------------------------------------  2115

Query 2045  CAGCCATCAGTACAATAATGATTTCCCTCACAGCTAGGTCCAGTTTA  2091
                                                           
Sbjct 2116  -----------------------------------------------  2115

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