Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13621
Subject:
XM_017006327.1
Aligned Length:
1841
Identities:
1085
Gaps:
754

Alignment

Query    1  ATGTCTGAGATACCGTCCACTATAGTCTCCAAGAACATGACCAATGACAAGAACAGCCTGGAATCCATGAACAT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTCTGAGATACCGTCCACTATAGTCTCCAAGAACATGACCAATGACAAGAACAGCCTGGAATCCATGAACAT  74

Query   75  CAGCTCTTCTTCAAGCACTGAAGAGAACCCAAAGAAACAGGCAAGAAAAAACGAAGAACATGGTCCTGACCCTT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CAGCTCTTCTTCAAGCACTGAAGAGAACCCAAAGAAACAGGCAAGAAAAAACGAAGAACATGGTCCTGACCCTT  148

Query  149  CAGCGAACCCTTTCCACTTATCTGGGGATGTGGATTTCTTCTTGCTCAGAGATCAGGAGCGGAATAAGGCTCTC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CAGCGAACCCTTTCCACTTATCTGGGGATGTGGATTTCTTCTTGCTCAGAGATCAGGAGCGGAATAAGGCTCTC  222

Query  223  TCCGAACGGCAGCAGCAGAAGACGATGCGGGTGCACCAGAAGATGACCTACTCCTCGAAAGTGTCGGCTAAGCA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCCGAACGGCAGCAGCAGAAGACGATGCGGGTGCACCAGAAGATGACCTACTCCTCGAAAGTGTCGGCTAAGCA  296

Query  297  CACCAGCCTGCGGCGGCAGCTGCAGCTGGAGGACAAGCAGGAGGACCTGGAGGCGCGCGCCGAGGCCGAGCATC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CACCAGCCTGCGGCGGCAGCTGCAGCTGGAGGACAAGCAGGAGGACCTGGAGGCGCGCGCCGAGGCCGAGCATC  370

Query  371  AGCGCGCCTTCCGCGACTACACGACCTGGAAGCTCACCTTGACCAAAGCAGAAAAGAATGTGGAGCCTGAGAAC  444
            ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct  371  AGCGCGCCTTCCGCGACTACACGACCTGGAAGCTCACCTTGACCAA---AGAAAAGAATGTGGAGCCTGAGAAC  441

Query  445  ATGAGTGGCTACATTAAGCAGAAGCGGCAAATGTTCCTCCTCCAGTATGCCCTGGATGTCAAGCGGAGAGAGAT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  ATGAGTGGCTACATTAAGCAGAAGCGGCAAATGTTCCTCCTCCAGTATGCCCTGGATGTCAAGCGGAGAGAGAT  515

Query  519  CCAGCGGCTGGAGACGCTGGCGACCAAAGAGGAGGCCAGGCTGGAGCGGGCCGAGAAATCCCTGGAGAAGGACG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  CCAGCGGCTGGAGACGCTGGCGACCAAAGAGGAGGCCAGGCTGGAGCGGGCCGAGAAATCCCTGGAGAAGGACG  589

Query  593  CCGCCTTGTTCGACGAGTTCGTCAGGGAGAATGACTGCAGCTCCGTGCAGGCCATGAGAGCGGCTGAGAAGGAG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  CCGCCTTGTTCGACGAGTTCGTCAGGGAGAATGACTGCAGCTCCGTGCAGGCCATGAGAGCGGCTGAGAAGGAG  663

Query  667  ACCAAAGCCAAGATAGAGAAGATCCTTGAGATCCGGGACCTCACCACCCAGATTGTTAATATCAAAAGTGAGAT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  664  ACCAAAGCCAAGATAGAGAAGATCCTTGAGATCCGGGACCTCACCACCCAGATTGTTAATATCAAAAGTGAGAT  737

Query  741  CTCCAGATTTGAAGACACTCTGAAGCATTACAAGGTCTATAAGGATTTCCTATACAAGCTGTCGCCCAAGGAGT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  CTCCAGATTTGAAGACACTCTGAAGCATTACAAGGTCTATAAGGATTTCCTATACAAGCTGTCGCCCAAGGAGT  811

Query  815  GGCTTGAAGAACAGGAAAAGAAACACTCGTTTCTCAAAAAGGCCAAGGAGGTCTCCGAGGCTTCCAAAGAGAGC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812  GGCTTGAAGAACAGGAAAAGAAACACTCGTTTCTCAAAAAGGCCAAGGAGGTCTCCGAGGCTTCCAAAGAGAGC  885

Query  889  AGTGTTAACTCCACACCAGGGGACAAAGGACCAGGGATCAAGGGCAAGGCGAGCTCCATGTGGGCCAAAGAGGG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct  886  AGTGTTAACTCCACACCAGGGGACAAAGGACCAGGGATCAAGGGCAAGGCGAGCTCCATGTGGGCCAA------  953

Query  963  TCAGGGTACAAAGAAGCCCTGGAGGTTTCTGCAGACGATGCGGCTGGGGCGGAGCCCGTCTTACCTGAGCAGCC  1036
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  954  --AGGGTACAAAGAAGCCCTGGAGGTTTCTGCAGACGATGCGGCTGGGGCGGAGCCCGTCTTACCTGAGCAGCC  1025

Query 1037  CCCAGCAAGGCAGCCAGCCCAGCGAGTCCAGCGGTGGCGACTCCAGAGG-GTCGAACTCTCCCATCCCCCCCAC  1109
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||.|                ||||
Sbjct 1026  CCCAGCAAGGCAGCCAGCCCAGCGAGTCCAGCGGTGGCGACTCCAGAGGTGTGG----------------CCAC  1083

Query 1110  GC----AGGAGGACACCGACAGCGATGGGGAGGAACCACAGCTGTACTTCACGGAGCCCCAGCAGCTCCTGGAT  1179
            ||    .||                                                                 
Sbjct 1084  GCCTTGTGG-----------------------------------------------------------------  1092

Query 1180  GTCTTCCGAGAGCTGGAGGAGCAGAACCTGTCGCTGATCCAGAACAGCCAGGAGACGGAGAAGACCCTGGAGGA  1253
                                                                                      
Sbjct 1093  --------------------------------------------------------------------------  1092

Query 1254  GCTGAGCCACACCCTGAAACACACCCAGATCCGCATGGACAGGGAGGTCAACCAGCTGAAGCAGTGGGTCACCA  1327
                                                                                      
Sbjct 1093  --------------------------------------------------------------------------  1092

Query 1328  CAATGATGATGTCCATCACCAAGGAGGAGGACACAGCAGCTGAGCTGGAGCTCAAAGCCCGAGTCTTCCACTTC  1401
                                                                                      
Sbjct 1093  --------------------------------------------------------------------------  1092

Query 1402  GGCGAGTACAAGGGCGATCAGCAGGATAAGCTGCTAGAGAGCCTGAACTGCAAGGTGCTGGATGTGTACCGGCA  1475
                                                                                      
Sbjct 1093  --------------------------------------------------------------------------  1092

Query 1476  CTGCACCGGCACCCAGCAGGAGGCCAACCTGGGCACCGTGCAGATGCTGACCATCATTGAGCACCAGCTGGATG  1549
                                                                                      
Sbjct 1093  --------------------------------------------------------------------------  1092

Query 1550  AGCTGCTAGAGAACCTGGAGCACGTGCCCCAGGTCAAGATCGAGCAGGCCGAGAGGGCAAAGGAGAAGGAGCGG  1623
                                                                                      
Sbjct 1093  --------------------------------------------------------------------------  1092

Query 1624  CGCATCAGACTTCGAGAAGAGAAGCTCCAGATGCAAAAGATCCTACAGGAGGAGCATCTGCAGCGGGCCCGGGC  1697
                                                                                      
Sbjct 1093  --------------------------------------------------------------------------  1092

Query 1698  GCGCGCCCAGGCTGAGATCAAGAAGAAGAGAGGCAGGACACTGGTATGCCGCTCACGACCCCCAGCCCACAGGA  1771
                                                                                      
Sbjct 1093  --------------------------------------------------------------------------  1092

Query 1772  TCAAACAACAGTCTGAGCACACACTGATGGACAAGGAGGAGGAGGAGCTGCTATTTTTCTTTACT  1836
                                                                             
Sbjct 1093  -----------------------------------------------------------------  1092

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.