Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13646
Subject:
XR_001753715.2
Aligned Length:
3567
Identities:
192
Gaps:
3346

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGACCAGGAAGCGGATCCCGTGGAGTGAAGGTCGCACCGCGGCGGATTGACTTCTAAAGACTTGGTACGTGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGGGTCTACTGACATTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAAGCACTCATGACAAAAACCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTTGCATGCCATAGATGTCACACTGGTGAGAATCCTTACACGTGTAATGAGTGTGGCAAGACATTCAGTCACAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTTACAAGTGTAATGAGTGTGGCAAGACCTTTGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GTCATCATAGACTTCATACTGGAAAGAAATCTTAGAAGTGTAAATTTGCAAGGTTTTTAGGCAACAGTCAAACC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TTGCATGTCATCATAGACTTTATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAAGTTTTCAATTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CAAATCACTCCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATTTCGGGTGTGATTCACACCTGGCCCAACATACTGGAATTCACACTGGAAAGGAACTGTACAAGTGTAATGAG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGTGGCAGAGCCTTTGGTGGTCAGTCAACACTTACTCACCATCAAGCAATCCATGGTATAGGGAAACTTGACTA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATGTAATGATTGTCACAAAGTCTTCAGTAATATTACAGCCATTGCAAAACATTGGAGAATCCATAATGAAGGAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GTCTTACAAGTGTAATAAATGTGGCAAGTTTTTCAGACATCATTCATAACTTGCAGTTCATTGGCGATCTTATA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CAGGAGAGAAATCTTACAAATGTGATGATTGTGGCAAGGTCTTCAGTCAAGCTTCATCTTTTGCAAAACGGGAG  2072

Query    1  --------------------------------ATGATTGTG-GCAAAGCCTTTACTTCACATTCACACCTCGTT  41
                                            ||||||||| ||||||||||||||||||.||||||||.|.||
Sbjct 2073  AATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGAGCAAAGCCTTTACTTCACGTTCACACCACATT  2146

Query   42  GGACATCAGAGAATCCATACTGGACAGAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTC  115
            .||.|||||||.||||||||||||||||||||||.||||.|||.|..||||||||||||||||||||||||||.
Sbjct 2147  AGATATCAGAGGATCCATACTGGACAGAAATCTTACAAACGTCCTATGTGTGGCAAGGTCTTCAGTCCGAGGTT  2220

Query  116  ACTCCTTGCAGAACATGAGAAAATTCATTTTTGAGATAACTGTTCCCAATGCAGTGAGTATAGCAAACCATCAA  189
            |||||||||||||.||.|.||..||||||||||||.|||..|||.|.|||||.|||||.|.|||||||||||||
Sbjct 2221  ACTCCTTGCAGAATATCATAACGTTCATTTTTGAGGTAATAGTTACAAATGCGGTGAGCACAGCAAACCATCAA  2294

Query  190  GCATTAATTGACATTGGAGTCAATTCAGCATTGACT--------------------------------------  225
            |    .|||||||.|.||||||||||||.|||||||                                      
Sbjct 2295  G----GATTGACAGTAGAGTCAATTCAGAATTGACTTGAGTTTGAGTTGACTTAAAACATTCAGTTGAAGCATT  2364

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2365  AATTGACATTAAAGTGTTTATGTTAAGAGGATTGGGCCAGGCGTGTGGCTCACGCCTGTAAATCCAGCACTTTA  2438

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2439  GGAGCCCAAGGTGGATAGATCACTTGAGGTCATGAGTTTGAGATCAGCCTGGCCAACAGACGTCCTCACCAGCG  2512

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2513  AGTTGGACTCTCGCCCTGGGCTCCTCATCGGCGCCTGGAGGGCAGCGCTGCAGCCCCACTCCCGGGAAGGCCGC  2586

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2587  GTCCTCTGCCTGGTCCTGGGATCCTGCAGACCCCACCCCTGTCCGAAGGCGCCATCGCCCACCACCTCCCTCCT  2660

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2661  CGTGCCGGCCCTGCTTCTCCCCAGTTCCAACCCCAGGAAAACGTGCTTCTCCTGGAGGCAACCCTCTTTTTCCA  2734

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2735  CCCTCGCCCTGTTGTTCCCGGAAGGCAGGCCTGGAATGTGAAGTTTCCAGGATTGATTTCCAAAGACTCATGCT  2808

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2809  ATGTAAGGAAGCCACCAAGAAGGGCAAAGAAAAGGAGCCAGGGACGGCTCTTCCTCAGGGACACTAGACTTTCA  2882

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2883  GGGATGTGGCTATAGATTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGAA  2956

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 2957  GTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGGGTGAGGAAAATATCCCTCCAGACATGAGGAATCTGCC  3030

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3031  CTTGTCTATCTTGGCTCTTCCTGGTTTTGTATTCTCTTTTGTGATGTTGCCCCATACATGCTTTTCATGTACAT  3104

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3105  GTCATTGTTTTCTACAGTGATGACCCTCATATTTGTCATGGACAGCTTCTTAGAGACTCCCTTATGGAGTGGTT  3178

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3179  TTACATAAAACCAGAAAATTCATGAAGAACACTTTGACTAATAAGATTGAACATCATCCTGCTCTAGGCAGAGA  3252

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3253  TGCCCCTGGAGGCCCTGAGCGGAATTGTCACCATGGCCCAGGATATGAGATAGAAAGCATCACACTGACTGACA  3326

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3327  AGTGTTTCCAGCTGCGCTTGTGGTTTTGTGTTTTTTGTTTCATTTTGTTTTTATGAGACAGAGTGTTGAACAGG  3400

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3401  TTGGAGTGCAGTGTCGTGATCTCAGCTCATTGCAACCTCCACCTTCTGGGCTCAAGCAATTCACATACCTGAGC  3474

Query  226  --------------------------------------------------------------------------  225
                                                                                      
Sbjct 3475  CTCCCAACCTAACTGAAATTACAGATGCATGTCACCATACCTGGCTAATTTTGTATTTTTTTTATTTTTATTTT  3548

Query  226  ---------------  225
                           
Sbjct 3549  ATTTTTATTTTTTTT  3563

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.