Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13704
Subject:
XR_002956447.1
Aligned Length:
3930
Identities:
226
Gaps:
3691

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCGAGCCTTGGTGTCTGGCGGTTTCCGAGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGCCGATGTACCAGACAAGAAGACAAGAAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATC  370

Query    1  --------------------------------ATGCAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTG  42
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTG  444

Query   43  AAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGT  116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGT  518

Query  117  TTCCATGATCGTGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAGAA--  188
            ||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||  
Sbjct  519  TTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAACAAAT  592

Query  189  ------------CATG----------GAAGGG------------GTGC----------TGATGGA---------  209
                        ||.|          ||||||            ||||          |.|||.|         
Sbjct  593  CGCAGTCTTCTCCAGGCTGACAAGGCGAAGGGCATGGCTTCGAAGTGCAAAAGAGTCATCATGAAACATCATGA  666

Query  210  --CGTGGACTGTGAGAGCGTCT---------ACCCCA---------------TTGTG-----------------  240
              |.||.|...|.|| ||||||         .|||||               ||.||                 
Sbjct  667  ATCATGAATCATTAG-GCGTCTTCCCTTCGCTCCCCACTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCT  739

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct  740  GTTGCCCAGGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTC  813

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct  814  CTGCCGTAGCCTCCTGAGTAGCTGGGATTACAGGTCCCCGCCACCACACCTGGCTAATTTTCTTATTTATTTAT  887

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct  888  TTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACC  961

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct  962  TGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCATTGCACCCAACTCACTCCCCACCTTAAAACCA  1035

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1036  AAAGCGCTCTGGCTCTCAATGGAGACATCAAGCCCTCCCTGCCCCTTCTCCCTCCCCTTTCAGAGAATCTCCAG  1109

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1110  GAATTTCTGCCATTGTGCAGGGAGCAATTGAAAAATCAGTTAGTTCAGCTGGGTGCAGTGGCTCATGTCTGTAA  1183

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1184  TCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAGCACAG  1257

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1258  TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGATGGGCACCTGTAATCCCAGCTACTC  1331

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1332  TGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGACTGCAGCATTGCAC  1405

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1406  TCCAGCCTGCGCAACAAGAGTGAAACTGTCTCAAAAAACAAAACAAAACAAAACACAAAAAGAAAGAAAAAAGG  1479

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1480  AAAAATCAGTTAGTTCGATTATTAGAAGACTAGATTATTGCTCAGCAGTAACCACTCCTTTCCCACAAACTCCC  1553

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1554  CTCTCTAGGAGGAATGTACCTCCCCACCCATTCCTGTTAGGCTTGGCCAGGTGAATCGCTTTGGCCAATAGAAT  1627

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1628  GTAACTGACAAGGTGAGCAGAGATTTGCAGTGGGCTTGTGCTTGGTGCTGGTCCTCCGGGGCTCCTGCCTTTAG  1701

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1702  CCAGGGGAAGCACACTCCCCAGCCCCTCCTTAGCCCTCTGGCCCTGGGGAGAATGAGAGGCATGTGGCACAGTC  1775

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1776  CTGGACCCAGCCGTGGCTGGGAGCAAGCCTGGAAGCTTGAGCGAGAGATAAATGCTTGGTCTTTTTGTTTGAGA  1849

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1850  CTAAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGTGGCACAATCTCAGCTCATTGCAACCTCCACCTCCCA  1923

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1924  GGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGCCAAATTGGAAGACCCACTTCTCTG  1997

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1998  GACTGGATGCTGCATTGAATTGAGCAAAGGAACTGAGTGCCCGGGGAGCTCAAAGGGAAGCAGCCCAGCCTTCC  2071

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2072  TTCCGGGGCAGAGCAGTGGTGGGGACCTGTTTCCAGCTGCTTGTGCCCCCCACTTCATGGAGGAGGGACCAGGG  2145

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2146  ATCCTCAGAGGAGAGGGTGATGTTTGACAGTGGCTGCCTGCCCTGAAAATCGCCCTTGTCTGTCCAGCCTGGCC  2219

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2220  TGAATTTCACCCACATCAACCCACATGGGATACTTTATTTATTTATTTATCTATTTATTTATTTATTTATTTAT  2293

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2294  TTTAGAGCCAGGGTCTCACCCTGTGGCCCAGGCTGGAGTGCCGTGGTGCTATCATAGCTCACTGCAGCCTCAAA  2367

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2368  CTCCTGGGCTCAAGTGATCCTCCCGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGAACACACCACTGTGCCTG  2441

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2442  GCTTATTTTTCTTTTTTTTTTTGGTAGAGATGGGGGTCTCTCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGC  2515

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2516  CTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTACTGGGATTACAGAATCGGCTCCCAGACACCTGCCACTCG  2589

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2590  TGAATGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGTGCGATGACATGGATCCTGCGGACA  2663

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2664  AACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAGGTCTCCAGCTCCTTCTCGGATGACGTCC  2737

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2738  TTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTAACCGCTCGTACAGGGACTGATGGAGAAT  2811

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2812  GAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGCGTCTACGCCCCCACGTCTGGGCCCTCAC  2885

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2886  CTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCGCTTCCCCCCATGTCCTAGCTGCCCTCCC  2959

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2960  TGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGCTGTGACTCTGGTGGGGTTCCGAAGGCCC  3033

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3034  CTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGAGGCACTCATCGTTTCGTT  3107

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3108  CCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCACGAGGCTCGCTCTGAGCCC  3181

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3182  AGGCTGGAGTTCAGTGATGGATCTCAGCTCACTGCAGCCGCCACCTCCTGGGCTCAAGAGATCCTCCTGCCTCG  3255

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3256  GCCTCCCAAGTAGCTGGGATTACAGACGTGCACCACCAGGCCCAGCTAATTTATTTTTTAGTTTTTAATTTGCT  3329

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3330  GGTAAGATGGTTTGTAGCTTTGTTGCCTAGGCTGGTCTTGAACTCCTGGCTTCAAGCGATCCTCCAGTCTTGAC  3403

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3404  CTCCCAAAGTGCTGGGATTATAGGCGTAGGCTACAGCCAACTTTCAATACTGCCCCATTGGGGGTTACGTTTCC  3477

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3478  AACACATGAAATTAGGAGGATACATTCAAACCACAGCAGTATATTATGACCATAATATTCATTAACTGTGTAAC  3551

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3552  AGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACCAGAGTGGGTAGATCACTCGAGGTCA  3625

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3626  GGAGTTTGAGACCAGCCTGGCCCACATGATGAAACCGCCTCTCTACTAAAAATACAAAAAATTAGCCGGTGTGG  3699

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3700  TGGCAGGCGCCTGTAACCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAATCCGGGAGGTGGAGGTG  3773

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3774  GCAGTGAGCCTGATTGCACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAATAAACAAACAA  3847

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3848  ACAAACAAAACCTGTATAACAGAGTGTCATTGAATTTCTAAACGTTGAAAGACTTCACATTAAAAAAAAACTCA  3921

Query  241  --------  240
                    
Sbjct 3922  CAATTTAA  3929

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