Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13723
- Subject:
- NM_027256.2
- Aligned Length:
- 2922
- Identities:
- 1148
- Gaps:
- 1635
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGCAGGAGGAAATTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACCAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGCCACCTCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGCAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTGGAGGGGGTAGTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTGCATCACTCTTGGGATT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATTATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAACATACTACAGAATGAAAAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGTAAACTACCAGAAAATCAAGCTACC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAAGTGCGATTAGTGGATGTGGCCTGCAAGCACCTGACAGATACTTCCCATGGTGTAAGAAATAAGTGCTTGCA 518
Query 1 ---------------------------------------------------ATG--CAGCGGCCGCTGAGGGTG 21
|.| ||||.||| ||.|..
Sbjct 519 ATTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATACTGAAGGCTCAGCTGCC----AGAGAT 588
Query 22 GCGCA----------GGGGCCCCGGCCAG-----------CCCGGGGCTG--CAGCAG---------------T 57
|..|| ||||.||....||| |.||||.|.| |||||| |
Sbjct 589 GTTCAGAAAATTATCGGGGACCACTTCAGTGACCAAGATCCACGGGTCAGAACAGCAGCTATAAAAGCCATGTT 662
Query 58 GCGGACAGCTCCA------------GAAGCT-CATC----------------GGCATCTCCATTG------GCA 96
| |||||||| ||||.| ||.| |||.|.|..|||| |..
Sbjct 663 G----CAGCTCCATGAAAGAGGACTGAAGTTACACCAAACGATTTATAATCAGGCCTGTAAATTGCTCTCTGAT 732
Query 97 GCCTGCGCGGGCTGGGCACCAAGTGCGCTGT------GTCCAAC--------GACCTCACCGAGCAGGAGATAC 156
|.||.|| |.||.||||||.|| |||||.| |...|||.|.||| .
Sbjct 733 GACTACG----------AGCAGGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTTGTCAGCCAGC--------T 788
Query 157 GGACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAA 229
..|.|||| |||.||.||.|||||.||.|||||||||||||||||.||..|||||||||||||.||||||||||
Sbjct 789 CTATCCTGAGAGTATAGTTCCAATACCGTCTTCTAATGAAGAAATCCGTCTAGTTGATGATGCATTTGGAAAAA 862
Query 230 TTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAA 303
||||.||||||||||||||||||||.||||||||||.||||||.||.|||||.||.||||||||.|||||||||
Sbjct 863 TTTGCCACATGGTCAGTGATGGCTCCTGGGTGGTTCGTGTTCAAGCTGCAAAGCTATTGGGCTCGATGGAGCAA 936
Query 304 GTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACA 377
||.||.||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 937 GTTAGCTCTCATTTCTTGGAGCAGACTCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGCACTGCACA 1010
Query 378 TGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGG 451
|||||||||||||||||||||||||||.||||||||||||||||||||.||.||||.|||||||||||||||||
Sbjct 1011 TGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGGAAATGGGGAGATGATGCTCCCAAGG 1084
Query 452 AAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGAT 525
|||||.||||.||.|||||.||||||.||||.|||||||||||.||||||||.|||||||||||||||||||||
Sbjct 1085 AAGAAATAGACACGGGGGCCGTGAACCTGATAGAGTCAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGAT 1158
Query 526 GAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGA 599
|||||||||||||||||.|||||||||||||||||.||.||||||.|.|||||||||||.||||||||||||||
Sbjct 1159 GAGATGTATGAGGTTCGCATTGCTGCTGTGGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGA 1232
Query 600 GAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCA 673
.|||||||||||.||.|||||||||||||||||.|||||||||||||||||.|||||||||||||||||.||||
Sbjct 1233 AAAGTGCCTTGACTTTCTAGTTGACATGTTCAATGATGAAATTGAGGAAGTGCGTCTGCAGTCCATACACACCA 1306
Query 674 TGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCA 747
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1307 TGAGAAAAATCTCTAACAATATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGATTCA 1380
Query 748 GCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCT 821
.||||.||||||.||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||
Sbjct 1381 TCCAGGGATATTAGAGAGGCTCTTCATGAACTCTTATGCTGCACTAATGTCTCAACCAAAGAAGGGATTCATCT 1454
Query 822 TGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGT 895
||||.||||||||||.||.|||||..|||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 1455 TGCACTGGTGGAGCTTCTAAAAAACCTAACCAAGTACCCTACTGACAGGGACTCCATATGGAAGTGCTTGAAGT 1528
Query 896 TTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGAC 969
|||||||.||.||||||||.|||||.||||||||..|||||||||||||..|||||||.||||||||||||||.
Sbjct 1529 TTCTGGGCAGCCGGCATCCGACCCTCGTGCTTCCTCTGGTGCCAGAGCTCTTGAGCACGCACCCATTTTTTGAT 1602
Query 970 ACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTG 1043
||.|||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||||||||||||||.|||||
Sbjct 1603 ACTGCTGAACCAGACATGGACGATCCAGCTTACATTGCAGTTTTAGTTCTTATCTTCAATGCTGCTAAGACCTG 1676
Query 1044 TCCAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATC 1117
|||.|||||||.||||.|.||||||||.||||||.||||||||||||||||||||||||||||.||||||||||
Sbjct 1677 TCCTACAATGCCAGCACTCTTCTCAGACCACACCCTCAGGCACTATGCCTACCTCCGAGACAGCCTTTCTCATC 1750
Query 1118 TTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCC----AGCATCATACCTCA 1187
|||||||||||||||||||||||||.||||||||||||||.||..||| |||| |.|||||..|||||
Sbjct 1751 TTGTTCCTGCCTTGAGGTTACCAGGGAGAAAACTGGTGTCCTCCACTG----TCCCCTCTAACATCACCCCTCA 1820
Query 1188 AGAGGATCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGG 1261
.||.||||||||.|||||||||||||||||||||||||||||.|||||||||.||||||||.|.||.|||||||
Sbjct 1821 TGAAGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGGGTGTATAGTGTTCAGCACCTAGATCCTCAGG 1894
Query 1262 GAGCCCAGGAGCTGCTGGAATTCACCATC--------------------------------------------- 1290
|.|||||.|||||||||||||||||||||
Sbjct 1895 GGGCCCAAGAGCTGCTGGAATTCACCATCAGAGATCTGCAAAGACTTGGAGAGCTTCAGTCTGAATTGGCAGGA 1968
Query 1291 -------------------------------------------------AGGCCTTGCAGGAAAAGTCGTGGAA 1315
|||||||||||||||||..||||||
Sbjct 1969 GTAGCTGACTTCTCTGCCACCTATCTTCAGTGTCAACTGCTCCTCATTAAGGCCTTGCAGGAAAAGCTGTGGAA 2042
Query 1316 TG------------------------------------------------------------------------ 1317
||
Sbjct 2043 TGTGGCTGCCCCCTTGTATCTAAAGCAGAGTGATTTGGCCTCAGCAGCAGCAAAACAGATCATGGAGGAAACCT 2116
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2117 ACAAAATGGAGTTTATGTACAGTGGTGTGGAAAACAAGCAGGTTGTGATCATACAGCACATGAGGCTTCAGGCC 2190
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2191 AAAGCTCTGCAACTCATAGTAACTGCACGAACTACTCGAGGAGTAGACCCCTTATTTGGAATGTGTGAAAAATT 2264
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2265 TTTACAGGAAGTGGATTTTTTTCAGAGGTGTTTCATTGCGGATTTGCCCCACCTTCAAGATAGCTTTGTGGACA 2338
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2339 AACTCCTTGATCTTATGCCCCGACTCATGGCATCTAAACCTGTTGAAGTGATCAAAATTCTGCAGACAATGCTG 2412
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2413 CGGCAGAGCACCTTCTTACATCTTCCGCTTCCAGAGCAGATACACAAAGCCTCAGCCACCATTATTGAGCCGGC 2486
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2487 AGGAGAGTCAGACAATCCTTTGCGGTTTACATCTGGGTTGGTGGTAGCCTTGGATGTGGATGCAACCCTGGAAC 2560
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2561 ATGTGCAAGACCCCCAGAACACTGTCAAGGTTCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATCCACCCC 2634
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2635 AAGCCAGCAGATTTCCGGAATCCTGGCCCAGGACGGCACCGTCTCCTCACTCAGGTGTACCTCTCCCATACTGC 2708
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2709 CTGGACAGAACCATGCCAAGTGGAAGTGAGGCTATTGCTGGCCTACAACTCCGGTGCACGAATTCCAAAATCTC 2782
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2783 CATGGCTGGAGGGTAGTGAGATGTCACCACAGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCT 2856
Query 1318 ------------------------------------ 1317
Sbjct 2857 GTGAAAGTCTACATAATGCCCAAGCCTGCAAGACGC 2892
