Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13723
- Subject:
- XM_006507180.1
- Aligned Length:
- 2881
- Identities:
- 1166
- Gaps:
- 1580
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGCAGGAGGAAATTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACCAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGCCACCTCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGCAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTGGAGGGGGTAGTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTGCATCACTCTTGGGATT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATTATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAACATACTACAGAATGAAAAGT 370
Query 1 ---------------------------------------------------------------ATGCAGCGGCC 11
||..|||..||
Sbjct 371 CTCACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGTAAACTACCAGAAAATCAAGCTACC 444
Query 12 -----GCTGA-----GG--GTGGC--GCAGGGGCCCCGGCCAG------CCC----------------GGGGCT 49
|| || || ||||| ||| .||.||.|.||| ||| |.|..|
Sbjct 445 CAAGTGC-GATTAGTGGATGTGGCCTGCA--AGCACCTGACAGATACTTCCCATGGTGTAAGAAATAAGTGCTT 515
Query 50 GCA--------GC---------------------AGTG------------CGGACAGCTC-------------- 68
||| || |||| |.||..||||
Sbjct 516 GCAATTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATACTGAAGGCTCAGCTGCCAGAGATG 589
Query 69 --CAGAAGCTCATCGG----CATCTCCATTG----------------GCAGCCTGC------GCGGGCTG---- 110
|||||..|.||||| || ||.||.|| |||| ||.| |.||.|||
Sbjct 590 TTCAGAAAATTATCGGGGACCA-CTTCAGTGACCAAGATCCACGGTTGCAG-CTCCATGAAAGAGGACTGAAGT 661
Query 111 GGCACC------------------------AAGTGCGCTGTGTCCAACGACCTCACCGAGCAGGAG-------- 152
..|||| ||.|||.||.|| |.|| |..||||||||.|
Sbjct 662 TACACCAAACGATTTATAATCAGGCCTGTAAATTGCTCTCTG----ATGA---CTACGAGCAGGTGCGCAGTGC 728
Query 153 -------------ATACGG----------------ACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAG 196
||..|| |.|||| |||.||.||.|||||.||.|||||||||||||
Sbjct 729 TGCAGTCCAGCTTATCTGGGTTGTCAGCCAGCTCTATCCTGAGAGTATAGTTCCAATACCGTCTTCTAATGAAG 802
Query 197 AAATACGCTTAGTTGATGATGCGTTTGGAAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTT 270
||||.||..|||||||||||||.||||||||||||||.||||||||||||||||||||.||||||||||.||||
Sbjct 803 AAATCCGTCTAGTTGATGATGCATTTGGAAAAATTTGCCACATGGTCAGTGATGGCTCCTGGGTGGTTCGTGTT 876
Query 271 CAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCT 344
||.||.|||||.||.||||||||.|||||||||||.||.||||||||||||||||||||.||||||||||||||
Sbjct 877 CAAGCTGCAAAGCTATTGGGCTCGATGGAGCAAGTTAGCTCTCATTTCTTGGAGCAGACTCTTGACAAGAAGCT 950
Query 345 GATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCA 418
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 951 GATGTCAGATCTGAGGAGGAAACGCACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCA 1024
Query 419 GTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGA 492
|||||||.||.||||.||||||||||||||||||||||.||||.||.|||||.||||||.||||.|||||||||
Sbjct 1025 GTGGCAGGAAATGGGGAGATGATGCTCCCAAGGAAGAAATAGACACGGGGGCCGTGAACCTGATAGAGTCAGGA 1098
Query 493 GCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTG 566
||.||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.||
Sbjct 1099 GCGTGTGGAGCCTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGCATTGCTGCTGTGGAGGCTCTGTG 1172
Query 567 CATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAA 640
||||.|.|||||||||||.||||||||||||||.|||||||||||.||.|||||||||||||||||.|||||||
Sbjct 1173 CATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGAAAAGTGCCTTGACTTTCTAGTTGACATGTTCAATGATGAAA 1246
Query 641 TTGAGGAAGTACGTCTGCAGTCCATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAG 714
||||||||||.|||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1247 TTGAGGAAGTGCGTCTGCAGTCCATACACACCATGAGAAAAATCTCTAACAATATCACCCTCCGAGAAGATCAG 1320
Query 715 CTTGACACTGTCCTGGCTGTGCTAGAGGATTCAGCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTG 788
|||||||||||||||||||||.|||||||||||.||||.||||||.||||||||||||||||||||||||||||
Sbjct 1321 CTTGACACTGTCCTGGCTGTGTTAGAGGATTCATCCAGGGATATTAGAGAGGCTCTTCATGAACTCTTATGCTG 1394
Query 789 TACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTA 862
.||||||||.|||||||||||||||||||||||||||.||||||||||.||.|||||..|||||||||||||||
Sbjct 1395 CACTAATGTCTCAACCAAAGAAGGGATTCATCTTGCACTGGTGGAGCTTCTAAAAAACCTAACCAAGTACCCTA 1468
Query 863 CTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTG 936
||||.|||||||||||||||||||||||||||||||||||.||.||||||||.|||||.||||||||..|||||
Sbjct 1469 CTGACAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGCAGCCGGCATCCGACCCTCGTGCTTCCTCTGGTG 1542
Query 937 CCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGT 1010
||||||||..|||||||.||||||||||||||.||.|||||||||||||||||.|||||||||||.||||||||
Sbjct 1543 CCAGAGCTCTTGAGCACGCACCCATTTTTTGATACTGCTGAACCAGACATGGACGATCCAGCTTACATTGCAGT 1616
Query 1011 TTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGC 1084
|||.||.|||||.||||||||||||||.||||||||.|||||||.||||.|.||||||||.||||||.||||||
Sbjct 1617 TTTAGTTCTTATCTTCAATGCTGCTAAGACCTGTCCTACAATGCCAGCACTCTTCTCAGACCACACCCTCAGGC 1690
Query 1085 ACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCA 1158
||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||.
Sbjct 1691 ACTATGCCTACCTCCGAGACAGCCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGGAGAAAACTGGTGTCC 1764
Query 1159 TCAGCTGTTTCTCCC----AGCATCATACCTCAAGAGGATCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAA 1228
||..||| |||| |.|||||..|||||.||.||||||||.||||||||||||||||||||||||||||
Sbjct 1765 TCCACTG----TCCCCTCTAACATCACCCCTCATGAAGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAA 1834
Query 1229 GAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATC------------ 1290
|.|||||||||.||||||||.|.||.||||||||.|||||.|||||||||||||||||||||
Sbjct 1835 GGGTGTATAGTGTTCAGCACCTAGATCCTCAGGGGGCCCAAGAGCTGCTGGAATTCACCATCAGAGATCTGCAA 1908
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1909 AGACTTGGAGAGCTTCAGTCTGAATTGGCAGGAGTAGCTGACTTCTCTGCCACCTATCTTCAGTGTCAACTGCT 1982
Query 1291 --------AGGCCTTGCAGGAAAAGTCGTGGAATG--------------------------------------- 1317
|||||||||||||||||..||||||||
Sbjct 1983 CCTCATTAAGGCCTTGCAGGAAAAGCTGTGGAATGTGGCTGCCCCCTTGTATCTAAAGCAGAGTGATTTGGCCT 2056
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2057 CAGCAGCAGCAAAACAGATCATGGAGGAAACCTACAAAATGGAGTTTATGTACAGTGGTGTGGAAAACAAGCAG 2130
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2131 GTTGTGATCATACAGCACATGAGGCTTCAGGCCAAAGCTCTGCAACTCATAGTAACTGCACGAACTACTCGAGG 2204
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2205 AGTAGACCCCTTATTTGGAATGTGTGAAAAATTTTTACAGGAAGTGGATTTTTTTCAGAGGTGTTTCATTGCGG 2278
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2279 ATTTGCCCCACCTTCAAGATAGCTTTGTGGACAAACTCCTTGATCTTATGCCCCGACTCATGGCATCTAAACCT 2352
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2353 GTTGAAGTGATCAAAATTCTGCAGACAATGCTGCGGCAGAGCACCTTCTTACATCTTCCGCTTCCAGAGCAGAT 2426
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2427 ACACAAAGCCTCAGCCACCATTATTGAGCCGGCAGGAGAGTCAGACAATCCTTTGCGGTTTACATCTGGGTTGG 2500
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2501 TGGTAGCCTTGGATGTGGATGCAACCCTGGAACATGTGCAAGACCCCCAGAACACTGTCAAGGTTCAGGTCTTA 2574
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2575 TATCCAGATGGCCAGGCTCAGATGATCCACCCCAAGCCAGCAGATTTCCGGAATCCTGGCCCAGGACGGCACCG 2648
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2649 TCTCCTCACTCAGGTGTACCTCTCCCATACTGCCTGGACAGAACCATGCCAAGTGGAAGTGAGGCTATTGCTGG 2722
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2723 CCTACAACTCCGGTGCACGAATTCCAAAATCTCCATGGCTGGAGGGTAGTGAGATGTCACCACAGGTGGAAACC 2796
Query 1318 --------------------------------------------------------------------- 1317
Sbjct 2797 AGCATCGAGGGCACCATCCCCTTCAGTAAGCCTGTGAAAGTCTACATAATGCCCAAGCCTGCAAGACGC 2865
