Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13723
Subject:
XM_011545353.3
Aligned Length:
1974
Identities:
835
Gaps:
1098

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGTTCAGCCACAGGAGGAAATTGCTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAGATCTGTGTAAAGCTACCTCCCCAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTCAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAAAATTGCATCATTGTTGGGTTTATT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCAACATCCTGCAGAATGAAAAGTCTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAGCTACCAGAGAATCAAGCTATCCAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGGTGTAAGAAATAAGTGCCTGCAGTT  518

Query    1  -----------------------------------------ATGCAG-CGGCC--GCTG---------------  15
                                                     |||||| .||||  ||||               
Sbjct  519  ACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCAGA  592

Query   16  -------AGGGTGGCG-------CAGGGGCCCCGGCCAGCCCGGGGCTGCAGCAGTGCGGACAGCTCCAGAAGC  75
                   ||||    |       |||.|.||..|.||  |.||.|.|.| |.|||      |||||..|.||||
Sbjct  593  AGATTATAGGG----GATTACTTCAGTGACCAAGACC--CACGTGTCAG-AACAG------CAGCTATAAAAGC  653

Query   76  TCATCG--GCATCTCCAT----------TGGCA------------------------GCCTG-------CGCGG  106
             ||| |  |||.||||||          ||..|                        |||||       |.|  
Sbjct  654  -CAT-GTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTC--  723

Query  107  GCTGGGCAC------CAAGTGCGCTGT------GTCCAAC--------GACCTCACCGAGCAGGAGATACGGAC  160
            .|||...||      |||||||||.||      |||||.|        |.|.|||...|||        ...|.
Sbjct  724  TCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGC--------TCTAT  789

Query  161  CCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATTTG  233
            |||| .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  790  CCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTG  863

Query  234  TCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCA  307
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  864  TCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCA  937

Query  308  GTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAG  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  938  GTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAG  1011

Query  382  CGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAAGA  455
            |||||||||||||||||||||||.||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1012  CGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGA  1085

Query  456  AGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGA  529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086  AGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGA  1159

Query  530  TGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAG  603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160  TGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAG  1233

Query  604  TGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATGAG  677
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 1234  TGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAG  1307

Query  678  AAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCAGCCA  751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1308  AAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCA  1381

Query  752  GAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCA  825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382  GAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCA  1455

Query  826  TTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCT  899
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   .||||       
Sbjct 1456  TTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAA---ATTGA-------  1519

Query  900  GGGA-AGT-CGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACAC  971
             ||| ||| ||||  ||                                                         
Sbjct 1520  -GGATAGTACGGC--CC---------------------------------------------------------  1533

Query  972  AGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTC  1045
                                                                                      
Sbjct 1534  --------------------------------------------------------------------------  1533

Query 1046  CAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTT  1119
                                                                                      
Sbjct 1534  --------------------------------------------------------------------------  1533

Query 1120  GTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGA  1193
                                                                                      
Sbjct 1534  --------------------------------------------------------------------------  1533

Query 1194  TCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCC  1267
                                                                                      
Sbjct 1534  --------------------------------------------------------------------------  1533

Query 1268  AGGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGGAATG  1317
                                                              
Sbjct 1534  --------------------------------------------------  1533

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