Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13723
- Subject:
- XR_001748040.2
- Aligned Length:
- 3397
- Identities:
- 1242
- Gaps:
- 2105
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCTGAGAGGGCCCGCGGGTAGGCATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAGCCACAGGAGGAAATTGCTACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTGTGTAAAGCTACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATTGCATCATTGTTGGGTTTATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATCCTGCAGAATGAAAAGTCTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGG 518
Query 1 -----------------------------------------------------------------ATGCAG-CG 8
|||||| .|
Sbjct 519 TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG 592
Query 9 GCC--GCTG----------------------AGGGTGGCG-------CAGGGGCCCCGGCCAGCCCGGGGCTGC 51
||| |||| |||| | |||.|.||..|.|| |.||.|.|.|
Sbjct 593 GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGG----GATTACTTCAGTGACCAAGACC--CACGTGTCAG- 659
Query 52 AGCAGTGCGGACAGCTCCAGAAGCTCATCG--GCATCTCCAT----------TGGCA----------------- 96
|.||| |||||..|.|||| ||| | |||.|||||| ||..|
Sbjct 660 AACAG------CAGCTATAAAAGC-CAT-GTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTA 725
Query 97 -------GCCTG-------CGCGGGCTGGGCAC------CAAGTGCGCTGT------GTCCAAC--------GA 136
||||| |.| .|||...|| |||||||||.|| |||||.| |.
Sbjct 726 TAATCAGGCCTGTAAATTACTC--TCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGT 797
Query 137 CCTCACCGAGCAGGAGATACGGACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGT 209
|.|||...||| ...|.|||| .||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 CGTCAGTCAGC--------TCTATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGT 863
Query 210 TGATGATGCGTTTGGAAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAAC 283
|||||||||||||||.||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 864 TGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAAC 937
Query 284 TGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTG 1011
Query 358 AGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTG 431
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1012 AGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTG 1085
Query 432 GGAAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTT 505
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTT 1159
Query 506 TTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAG 1233
Query 580 TCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACG 1307
Query 654 TCTGCAGTCCATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCC 727
|||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCC 1381
Query 728 TGGCTGTGCTAGAGGATTCAGCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCA 801
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCA 1455
Query 802 ACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTC 1529
Query 876 CATATGGAA--------------------------------------------GTGCTTGAAGTTTCTGGGAAG 905
||||||||| |||||||||||||||||||||
Sbjct 1530 CATATGGAAGTAATGACTTTTTTGCCCATTTACTCACTGAGTCCCATAATGTGGTGCTTGAAGTTTCTGGGAAG 1603
Query 906 TCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAAC 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAAC 1677
Query 980 CAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAATG 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAATG 1751
Query 1054 CGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTGC 1127
|.||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 CCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTGC 1825
Query 1128 CTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCCTTCGC 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1826 CTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCCTTCCC 1899
Query 1202 AGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCTG 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 AGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCTG 1973
Query 1276 CTGGAATTCACCATCAGGC--------CTTGCAGGAAAAGTC-----GTGGAATG------------------- 1317
||||||||||||||||||| ||||..|..|||||| |.||.||.
Sbjct 1974 CTGGAATTCACCATCAGGCATCTCCTTCTTGATGTCAAAGTCCCCAGGAGGCATCGTTAACTATCGTAACGTTA 2047
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2048 CCTGCCGAGCATGAGATGGGAGGAAGTGTCATAGTCCAGTGGACGGTTTTTTCCAGGCTACTGTGAAACCTGAT 2121
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2122 GTGTTATGCCGGCCCTGAAACAGACAGCTTCCCAAGTGACTCAGACCTTAAGGGATCTGCAAAGACTTGGAGAA 2195
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2196 CTTCAATCTGAATTGGCAGGAGTAGCTGATTTCTCTGCCACCTATCTTCGCTGTCAACTACTTCTCATCAAGGC 2269
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2270 CTTGCAGGAAAAGTTGTGGAATGTAGCTGCCCCTTTGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGA 2343
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2344 AACAGATTATGGAAGAGACCTACAAAATGGAATTCATGTACAGTGGTGTGGAGAATAAGCAGGTGGTGATTATA 2417
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2418 CATCACATGAGGCTGCAGGCCAAAGCTTTGCAACTTATAGTAACAGCACGAACTACACGAGGACTTGACCCCTT 2491
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2492 ATTTGGGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTTCAGAGGTATTTCATCGCTGATTTGCCCCACT 2565
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2566 TGCAGGACAGCTTTGTGGACAAACTCCTTGACCTTATGCCCCGACTCATGACATCCAAACCTGCAGAAGTGGTC 2639
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2640 AAAATTCTACAGACCATGCTGCGACAGAGTGCCTTTCTGCATCTCCCGCTTCCAGAGCAGATCCACAAAGCCTC 2713
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2714 AGCCACCATCATCGAGCCAGCGGGCGAGTCAGACAACCCTTTGCGGTTTACCTCTGGGTTGGTGGTTGCCCTGG 2787
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2788 ATGTTGATGCAACCCTGGAGCATGTGCAGGATCCTCAGAACACTGTTAAGGTCCAGGTCTTATATCCAGATGGC 2861
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2862 CAGGCTCAGATGATTCACCCCAAGCCTGCAGACTTCCGGAATCCTGGCCCAGGGCGGCACCGGCTCATCACTCA 2935
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2936 GGTTTATCTCTCCCACACCGCTTGGACAGAGGCATGCCAGGTGGAAGTGAGGCTGCTGCTGGCCTACAACTCCA 3009
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3010 GTGCTCGCATTCCAAAATGCCCCTGGATGGAGGGTGGTGAGATGTCACCACAGGTGGAAACCAGCATCGAGGGC 3083
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3084 ACCATTCCCTTCAGCAAGCCTGTAAAAGTTTATATAATGCCCAAACCTGCACGGCGCTAAGGCAAAAACAGTCT 3157
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3158 TCCCAACCGTGGCCTAGAGGGCCCTTCTTAGGTGTCAGAATGAGCCAAGCCTGAAGCACTTCACCTGGAATTGA 3231
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3232 TGTGTAGGCTTAAGGAGTATGTGACCCTTACAGTCTCATCTGGTATCAAACACAGGATAAATTGTTTCTTCATT 3305
Query 1318 ------------------------------------------------------------------- 1317
Sbjct 3306 AAAAAATAAAAAACCTTCAAGTCTACTTACCCTTCTCCTGTCCACAATAAAGTTGAGAAAACACCAA 3372
