Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13723
- Subject:
- XR_002957209.1
- Aligned Length:
- 2593
- Identities:
- 1234
- Gaps:
- 1314
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCTGAGAGGGCCCGCGGGTAGGCATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAGCCACAGGAGGAAATTGCTACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTGTGTAAAGCTACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATTGCATCATTGTTGGGTTTATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATCCTGCAGAATGAAAAGTCTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGG 518
Query 1 -----------------------------------------------------------------ATGCAG-CG 8
|||||| .|
Sbjct 519 TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG 592
Query 9 GCC--GCTG----------------------AGGGTGGCG-------CAGGGGCCCCGGCCAGCCCGGGGCTGC 51
||| |||| |||| | |||.|.||..|.|| |.||.|.|.|
Sbjct 593 GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGG----GATTACTTCAGTGACCAAGACC--CACGTGTCAG- 659
Query 52 AGCAGTGCGGACAGCTCCAGAAGCTCATCG--GCATCTCCAT----------TGGCA----------------- 96
|.||| |||||..|.|||| ||| | |||.|||||| ||..|
Sbjct 660 AACAG------CAGCTATAAAAGC-CAT-GTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTA 725
Query 97 -------GCCTG-------CGCGGGCTGGGCAC------CAAGTGCGCTGT------GTCCAAC--------GA 136
||||| |.| .|||...|| |||||||||.|| |||||.| |.
Sbjct 726 TAATCAGGCCTGTAAATTACTC--TCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGT 797
Query 137 CCTCACCGAGCAGGAGATACGGACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGT 209
|.|||...||| ...|.|||| .||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 CGTCAGTCAGC--------TCTATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGT 863
Query 210 TGATGATGCGTTTGGAAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAAC 283
|||||||||||||||.||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 864 TGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAAC 937
Query 284 TGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTG 1011
Query 358 AGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTG 431
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1012 AGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTG 1085
Query 432 GGAAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTT 505
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTT 1159
Query 506 TTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAG 1233
Query 580 TCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACG 1307
Query 654 TCTGCAGTCCATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCC 727
|||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCC 1381
Query 728 TGGCTGTGCTAGAGGATTCAGCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCA 801
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCA 1455
Query 802 ACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTC 1529
Query 876 CATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 CATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGA 1603
Query 950 GCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 GCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATT 1677
Query 1024 TTCAATGCTGCTAAAACCTGTCCAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCT 1097
|||||||||||||||||||||||||||||||.||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1678 TTCAATGCTGCTAAAACCTGTCCAACAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCT 1751
Query 1098 CCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTC 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 CCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTC 1825
Query 1172 CCAGCATCATACCTCAAGAGGATCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAG 1245
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 CCAGCATCATACCTCAAGAGGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAG 1899
Query 1246 CACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGG------ 1313
||||||||||||||||||||||||||||||||||||||||||||||| |||||.||
Sbjct 1900 CACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAG-------------AGTCGAGGTTTCAC 1960
Query 1314 AATG---------------------------------------------------------------------- 1317
.|||
Sbjct 1961 CATGGTGGCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCCTCCCGCCTCGGCCTCCCAAAGTGCTGGAAT 2034
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2035 TACAGGCGTGAGCCACTGTGCCCGGCCTAGGCTCATTCTTTCTTCTGTCTTCATCTTCTGCATCAAGCAGCCTC 2108
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2109 TGCTTAACAATTCAGATCTAACTGTGCCCCCTGTATTCCATCCTGTGGGGAAAAGGAAACAGGAAGAGAAAGGC 2182
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2183 ATCTCCTTCTTGATGTCAAAGTCCCCAGGAGGCATCGTTAACTATCGTAACGTTACCTGCCGAGCATGAGATGG 2256
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2257 GAGGAAGTGTCATAGTCCAGTGGACGGTTTTTTCCAGGCTACTGTGAAACCTGATGTGTTATGCCGGCCCTGAA 2330
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2331 ACAGACAGCTTCCCAAGTGACTCAGACCTTAAGGGATCTGCAAAGACTTGGAGAACTTCAATCTGAATTGGCAG 2404
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2405 GAGTAGCTGATTTCTCTGCCACCTATCTTCGCTGTCAACTACTTCTCATCAAGGCCTTGCAGGAAAAGTTGTGG 2478
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2479 AATGTAGCTGCCCCTTTGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAGATTATGGAAGAGAC 2552
Query 1318 --- 1317
Sbjct 2553 CTA 2555
