Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13766
Subject:
NR_135753.2
Aligned Length:
5774
Identities:
220
Gaps:
5533

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGTACCTCACTGTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCTACCACAGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCACTGCCCTCTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGCTTGACACTGGGGAATCCAGCC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGTCCAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAACTCTCTAGAAATGTCATGATTG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGCTTCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCCCCCAAATTAAGGACCCATTTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TCTTCTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAGATTGATGGGCCTCCCCAAATC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TAATTTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCCAGATTCCCTTTTGAACACACA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TACCTTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTTCCCTGAGACCATGTTC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCCACAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTGGCCTCAATGGTCTTGA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GTAGCAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTGAGGGTCCCAGAGCACA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CACCCTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGACTTTTGTGAGGGATTTTAAAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ACAAAAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAAAATGATTTTTGAAGTT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTTAAATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTTGAAGCTTTACAAGATCTGATT  1924

Query    1  -------------------------------ATG-----GGGGGCGGAGTGAGCGGTGAACACAC--TGAACAG  36
                                           |||     |||||.|.|          |||||||  |||| |.
Sbjct 1925  TTTTTCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAA----------AACACACATTGAA-AT  1987

Query   37  AA----------------TCTGA---------GAT----TTAATAAGCC--------AAA--------TCAACA  65
            ||                |.|||         |||    ||.|||   |        |||        |||  .
Sbjct 1988  AAGACCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATA---CTGACTTTGAAATATTTTTGTCA--C  2056

Query   66  ATGTGGGAAG--TTC-----------------GTTTTGTTTT-TTTTTTTTGAGACGGAGTCTCGCTCTGTCAC  119
            |||| |.|||  |||                 |||||.|||| ||.||.|||||||||||||||||||||||.|
Sbjct 2057  ATGT-GAAAGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGC  2129

Query  120  CCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCC  193
            ||||||||.||||||.||||..||||||||||||||||||||||||||||.|.|||||||||||||||||||||
Sbjct 2130  CCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCC  2203

Query  194  TCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTT---------  258
            |||||||.||.||||||||||||.|||||||||||||||||.|||||||||||||||||||||||         
Sbjct 2204  TCAGCCTCCCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGA  2277

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2278  CGGGGTTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAG  2351

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2352  TGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCC  2425

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2426  CGTGCACATTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTT  2499

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2500  ACTGCCCAGATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCAT  2573

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2574  AAACAGAAAGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTT  2647

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2648  TCAAAGGATGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAA  2721

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2722  AATGTTTTTTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAA  2795

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2796  TTATTTTTTTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAAT  2869

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2870  GCTACGCTCTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACC  2943

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2944  TGCTGCCCGGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGC  3017

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3018  ACTGTTCTTACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAA  3091

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3092  AATAGGAACTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCT  3165

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3166  ACATGTATATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTA  3239

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3240  CCTATGATTTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAAT  3313

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3314  GGAGCTATGAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTT  3387

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3388  TGAAATTTTACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAAC  3461

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3462  AGCAGTGGGCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGA  3535

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3536  TGAGAAGTGGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCAT  3609

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3610  TCTTAATCTTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTG  3683

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3684  TGTCCAAAGCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGG  3757

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3758  TAGAAAAGTATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTA  3831

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3832  AGTTTACTTCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCT  3905

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3906  TCCTATGAAGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTT  3979

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3980  ATCATACCAAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAG  4053

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4054  CACATTCTTAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCT  4127

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4128  GGCTAACGGATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAA  4201

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4202  CATCTTTTGGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCAC  4275

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4276  TTCTGTTTTACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTG  4349

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4350  GCTTATGAGGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCA  4423

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4424  ATTTTTAAAATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATA  4497

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4498  AAGTACTTAAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATT  4571

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4572  TCTAACTGGACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACA  4645

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4646  CACTCTCTTTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTG  4719

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4720  GTTTTCATTCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTT  4793

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4794  TTCTTCAAACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTC  4867

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4868  TCGGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTT  4941

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4942  TGAGACCAGCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCG  5015

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5016  CGCACCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATT  5089

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5090  GAGCTGAGATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAG  5163

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5164  TTTCACTGTGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCT  5237

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5238  CTAGGAAAGGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTT  5311

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5312  GAAGTATGACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGC  5385

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5386  AGAAGGTGTAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCA  5459

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5460  CTCAAGTGTGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCT  5533

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5534  AAATGATCCAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTG  5607

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5608  GAGTGTGGCTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGA  5681

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5682  GCTTGAACCATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACG  5755

Query  259  --  258
              
Sbjct 5756  AA  5757

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