Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_242220.3
- Aligned Length:
- 5969
- Identities:
- 222
- Gaps:
- 5726
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGCAGTGATTACATCCAAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGTACATTACCTGATAAATATAAATATATCCAGACACTCCGGGAGAGCAGGGAACGTGCTCAGTCACTTTCAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTATCAAGAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATATAATATT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCTTGTCAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGGTCACTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTGTGGAAGATGCTGGCATCACAATCATTGGTGAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAACAATAGATAAAGCCAAGGAAGTGGGAGCCAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCTGAACATTCAAACAATCCATTGAGATATAAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTCTGCCACCTATCTGCTCGATGGAAAGGTTGTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCATGGATTTTTTTCCAGGATTAAATTTGGAAGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGCATTTCTTCTGCTCACACTTTGTTGCGGGGGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CACTGAGATATAAGGGATTGGAATGCTGAATAATGGATTGGAATGTTGAATAATGTTGAATACCTTCCTATGGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATCCTCCCTAACTCCTTCCCCTTGAACCACCCAGCCCCATCTATGGATATATGAAAGCTTTGAATGGATTTGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAAACAACT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTAG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTTGGGCTTACTTGGGGATGAACAAGTTCCTCAGGCAGAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCCATTCTGGATGCCCTCTCCAAGCATTTGGTCATGAAGCTTTCCTATGGTCCTGAAGAAAAAGATATGATTGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTGGCTTATG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAATGTTGCTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGGAGCGAAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAAAGCAGAAGGCATTATATATACTACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGTTTTTTTC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTATAAAGCA 3108
Query 1 -------------------------------------------------------ATGG--------GGGGC-G 10
|||| ||..| |
Sbjct 3109 TAATATGTTTTGGTTAACACAATGTACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTTGGAACAG 3182
Query 11 GAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGATTTAATAAGCCAA-----------ATCAACA---AT 67
||| || ||| |||| |||||| ||..||||||||..|.| ||.||.| ||
Sbjct 3183 GAGATGCAAGC--------CACT-AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAATACGTAT 3243
Query 68 GTGGGAAG----------------------------------------TTCGTTTTGTTTTTT----------- 90
|| |.||| ||| |||||||||||
Sbjct 3244 GT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTTGTTGTTG 3315
Query 91 ---TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGC 161
||||||||||.||||||||||||||||||||||||||.||||||.||||.|||||||||||||||||||||
Sbjct 3316 TTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGC 3389
Query 162 TCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCAT 235
||||||||...||||||||||||||||||||||||||||.||.|||||||||||||||||||.||||||||||.
Sbjct 3390 TCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCAC 3463
Query 236 GCCCGGCT-AATTTTTTGTATTTT-------------------------------------------------- 258
|||||||| |||||||||||||||
Sbjct 3464 GCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACTTTTTTCT 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 TAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTCATAAAGC 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 TATATTTTTATATTTTTAAAATTGATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCCAAAATGC 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 TATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTGAGTGTTT 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 GGACATGAGAATAGATAAGATTAAATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTATTTAACAA 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 AATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGAAACTTCC 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 TCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGATTATTTC 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 CCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAGTCAAGAA 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 AGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATAGAGATGG 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 GAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATTTATTAAT 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 AAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAGTATCAAT 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 GAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGTGCCTGTA 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 ATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAGTGAGATC 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 CCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACACTCATCTG 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 TCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGAGCTATAA 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 CTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAAGAAAAAA 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 ATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTATCATCAAC 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 TGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCTTGGAAAC 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 ATGGATATCCACATGCAAAATAATGAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCAAAGTTGA 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 CCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCTGACTTTG 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 AATTAGGCAATGATTTCTTAAATAAATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAAATTAAAA 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 TTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAATTTTTTT 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 TAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAATTAAAAG 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 GCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACAAAAGGCC 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 AATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGAGATATCA 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 CTTAACACTCACTGGAATAGATATATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGAAATTGGA 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 ACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCACAGATGT 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 TCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGAATAAACA 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 AAACGTGGCATATCCATACAAGGAATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCACCACAAC 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 ATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATTTCATTTA 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 TATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAGGGTTGGG 5757
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5758 GAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAGTTGATTG 5831
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5832 TGGTAATGGTGGCACAACTCTGAATATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACTGTGTGGT 5905
Query 259 ------------------------------------------------- 258
Sbjct 5906 ATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATTACAAATGCAA 5954