Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13781
Subject:
NR_103831.1
Aligned Length:
2856
Identities:
240
Gaps:
2580

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTGCAAACCAGTCCGGCTGCTTTAGAAACAAGTTGTTTTCTGCTTCCAGAACCACCCAGGAGCCTGCGTGATG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCTCTTCCCCCACCCGACCCCCTCTTCCCTCTGCCGGTCTCCTTGCTCCAGGATCTGCACAAGCAGAGGCGGCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGGGTTTGGCTTCCAGTTGGGAAATGAAGCTCCAAGGGCAGCCCTACTATGGCGGGCTGTGTGACCTGGGCCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCCCCTTGACATCTCCAGACTCGGCTTCCACATCTGCCACCACCAGGACACTGGATTGAATGTTGGGTACGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTAAGGCAAGGGAGACACAGAAGTCCTAAAGGCAATAAAGCTTTTCCCCACTGCCCCTCCATCTGGACGAGTCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCTGCCAAGCATCTTCAAGTCCCACTTTGAAACACGATTCTGCCACCTTCCTGTTCTGAGGATCTGGGAAAGCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGGGGGAAGGGGCTATTGGGAGTCCCGCTTGCTCCAGGCCCAGACCAGGAGGCTCAGGCAGGCTTATCTACTTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGATGTGGTGGGGGGCCCAGGATGCTGCCAGGGTCTCACAGCCATGGTCTCACAGCCACTATCAGCCTGTCCTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAGGGTATAAGAGAAGCTGGAAGCCTAGATGGGCACTGCCCTCAGGCAACTTCCAATCCAGCCAAGAAGAATAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGAGTAACACACAAAATATTGGGGGCATGAGGCAATAACTGTGGGTACACCTATAAAAACCTCTAATTGGGCTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACCTGGTACCAGACAGTATTTTAATTGGATCATATATAGTGCATTAATTCAGTTAATATTCACAACACCCCTAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAGGTAGCTACAATTATTATCCCCATTCGATGATGGGGAAAACTGACATCAGAAGAGGTCAACTTGCCCAAGTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCCAGAGCTGAAAAGCAACAGAGCTGAGATTTCACTGCAGGTATTCTGGCCCCAGAGTCTTGGTACAAATAGTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTAATGAACAAGTCTTCTTCTGGTAAGAGCACCCCAATTTTCCTTTGGAGAACCTCCACTTCCTCATTTCATGT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCCATGGGTGACCCTACCCTTGAGCTCTTGAGGTGAACACATGGACACACGATCCAGTCCTGACCAAACAGAAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATCTCACTTCCCTGGCTACAGTTAGTGATAGGTTCAGGATTGTAGCAATGACCCAAGACTGGCTTCTGAGAGTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACATTTGAGACTGTGGCTCAAACTCTTAGAGAAGCACTCGTTTTTCAACTGAGACACTACAGTCTTTACTACTC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTTGAAGACGGACTACCAGGAAGAAAGCCAACCTAGAGGGCTGCAAAGCTGAGCAGTGGAGAACAGCAAGTTCC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGATGACATTGTTTGATGGCCTAAACCCCATTATACTTCCACTGGTTATCTCCCTGGACTTTCCTGTTACACAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AAATTATCCCTTTTGTGTTGAAGCCAATTTGAATTGGATATCTGTCACTTACAACCAAAAAGGTCCAAATGTGC  1480

Query    1  --------------------------------------------------------------------ATGGAG  6
                                                                                |..|||
Sbjct 1481  TAGTGAACACAGAGCACATACTGTGAGCAACTACTCTTTTTCTTCTTTCTTTCTTTCTTTTTTCTGAGACAGAG  1554

Query    7  TCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAA  80
            ||||.||||||||||||||||||||||||.|||.||.|||||..|||||||||||||||||.|.|..|||||||
Sbjct 1555  TCTTTCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAA  1628

Query   81  GCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATT----ACAGGTGCCCACCACCACAGCTGGCTAATTTT  150
            |.||||||||||.||||||||||.||||||||||||||    |||.|||    |||||||..|.||||||||||
Sbjct 1629  GTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGACACGTG----CCACCACGCCCGGCTAATTTT  1698

Query  151  TGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGC  224
            ||||||.|||||||||||.||||||.|||||.||||||||.|||||||||||||||||||||  .|||.||.||
Sbjct 1699  TGTATTCTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCT--TGTGATCTGC  1770

Query  225  CTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGC--------------------  278
            |..|||.|||.|||.|||||||||||||||.|||.|||||||||.|||||.|||                    
Sbjct 1771  CCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCCGGCCCGAGCACCTAAGCTTTTCA  1844

Query  279  ---CATT-------------------------------------------------------------------  282
               ||||                                                                   
Sbjct 1845  AGACATTTCCAGAAAAACAAATGCAGGTAAGAAAGGATCAGTCTTCAAAGAACTTGGAAGCTGGTGAGGGATTA  1918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1919  CAAAGATTCTCAAATAACTTTAAAACAAGTCAGAACACAATTGACAGCACAAGGCAGCTACCCGGGTTCTCTGG  1992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1993  TTAATGCAAAGGGTGAGAATTTTCTATATTGGATGGAACACATCAGAAAAGTTCTCACGAAGGTGGTAGCAGTG  2066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2067  AAATTGGCCTCAGAAGTCTGATAGGATGTTGGCAGGTGAAGGCAGGGAAGCTACAGGGCAGACAGCATGAGGAA  2140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2141  GGGCCCAGGTTCAGGGAAGTATGGGCATGCAGGGGCAAGTGTAAATTGATGGGATTGCCTGGGACCAGAGGAAA  2214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2215  GGTCTAAAACGTACAGTCTGAGGCTGGGGCGGGGTGGGGAAAGGATGGTTCTGAGGTATCTGAAGTATCTCCAA  2288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2289  ATATCTGAAGATATTCCCCATGGAAAAGAAACTAGGCTTATTTGGAGTGACCCCAGAGGACAAGACTACGACTA  2362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2363  AAAATGGACGCTCGCAAATGGAGGAAGTAGACCTGACCCCTGACTAAGGAAGATGGTGCTACCTGTTTGGGGCA  2436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2437  AATGTTCAAAAAGAGGCTGTGTCTGTATGGTGGATGCTGTTAAAAGGGACTCAGAAACCAAATGAGAGTCTGAA  2510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2511  TTAGCTGAGTTTAACATTCTGTGAGTTTTGTGCCAGACTTGGGACTACTGCAGAAGACCCTGGGAGAGTTGGGA  2584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2585  TTGAATTCCAAAGGCAGTGCTGATGGACACTGACTTGAGGAGCCAGGAAAGAAGGCAGGAACAGTGGTGGGGAT  2658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2659  CACAGCCTCACCTGTATCTGTGCACTTCTATAAATTCACAGACTGGGAATTTTTAATGTGAACTGGATATTAGA  2732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2733  TGATGACCAGGAATTGTTTTAATTCTGTTAGGTGGGATAATACCATTCACTGTGCTGTGTAAGATAATGTCCAT  2806

Query  283  --------------------------------------------  282
                                                        
Sbjct 2807  ATTGTTTAGAGATGCATACTGAAGAATATAGGATGAAATGACAT  2850

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