Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13803
Subject:
XM_011529189.1
Aligned Length:
4370
Identities:
208
Gaps:
4156

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGATGAAGAAGAGAACCACTATGTCTCGCAGCTCAGGGAAGTCTACAGCAGCTGCGACACCACGGGGACTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTTTCTGGACCGCCAGGAGCTGACCCAGCTCTGCCTTAAGCTTCACCTGGAGCAGCAGCTGCCCGTCCTCCTGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGACGCTTCTCGGAAACGACCATTTCGCCAGGGTTAACTTTGAGGAATTTAAGGAAGGTTTTGTGGCTGTGTTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCTTCAAATGCTGGTGTTCGCCCCTCAGATGAAGACAGTAGTTCTTTGGAATCAGCTGCCTCCAGTGCCATCCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCCAAAGTATGTGAATGGTTCTAAGTGGTATGGCCGTCGGAGCCGGCCTGAGCTATGTGACGCTGCCACAGAAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCAGACGCGTGCCGGAGCAGCAAACCCAGGCCAGCCTGAAAAGTCACCTCTGGCGCTCAGCGTCTCTGGAGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGGAGAGTCCCAAGTCAGATGAAGAGGCCGAGAGCACTAAAGAAGCTCAGAATGAATTATTTGAAGCACAAGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACAGCTGCAGACCTGGGATTCTGAGGACTTTGGGAGCCCCCAGAAGTCCTGCAGCCCCTCCTTTGACACCCCAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGAGCCAGATCCGGGGCGTGTGGGAAGAGCTGGGGGTGGGCAGCAGCGGACACCTGAGCGAGCAGGAGCTGGCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTGGTCTGCCAGAGCGTCGGGCTCCAGGGACTCGAGAAAGAGGAACTCGAAGACCTGTTTAACAAACTGGATCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGACGGAGACGGCAAAGTGAGTCTTGAGGAATTCCAGCTTGGCCTCTTCAGTCATGAGCCCGCGCTACTTCTAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGTCTTCCACTCGGGTTAAACCGAGCAAGGCTTGGTCTCATTACCAGGTCCCAGAGGAGAGCGGCTGCCACACC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACCACAACCTCATCCCTCGTGTCCCTGTGCTCCAGCCTGCGCCTCTTCTCCAGCATTGACGATGGTTCTGGCTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CGCTTTTCCTGATCAGGTCCTGGCCATGTGGACCCAGGAGGGGATTCAGAATGGCAGGGAGATCTTGCAGGCTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCTGCTTCCAGAGCCTGGACTTCAGCGTGGACGAGAAGGTGAACCTTCTGGAGCTGACCTGGGCCCTTGACAAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GAGCTCATGACAGTGGACAGTGCCGTCCAGCAGGCAGCCCTGGCCTGCTACCACCAGGAGCTGAGCTACCAGCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGGGCAGGTGGAGCAGCTGGCAAGGGAGCGTGACAAGGCAAGGCAGGACCTGGAGAGGGCCGAGAAGAGGAACC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGGAGTTTGTGAAAGAGATGGACGACTGCCACTCCACCCTGGAGCAGCTCACGGAGAAGAAAATCAAGCATCTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GAGCAGGGGTACCGGGAAAGGCTGAGCCTCCTGCGGTCTGAGGTGGAGGCGGAGCGAGAGCTGTTCTGGGAGCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGCCCACAGGCAGAGGGCCGCGCTGGAGTGGGACGTGGGGCGCCTGCAGGCTGAGGAGGCTGGCCTCCGCGAGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGCTGACCCTGGCCCTGAAGGAAAACAGTCGCCTACAGAAGGAGATTGTGGAAGTGGTGGAAAAGCTTTCGGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCGGAGAGGCTGGCCCTGAAGCTGCAGAAGGACCTGGAGTTTGTGCTGAAGGACAAGCTGGAGCCACAGAGTGC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGAGCTCCTGGCCCAGGAGGAGCGGTTCGCAGCAGTCCTGAAGGAATACGAGCTCAAGTGCCGGGACCTGCAGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ACCGCAACGATGAGCTGCAAGCTGAGCTGGAAGGCCTGTGGGCGCGGCTGCCCAAGAACCGGCACAGCCCCTCA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGGAGCCCGGATGGGCGCAGACGGCAGCTCCCTGGACTCGGCCCAGCAGGCATTTCATTCCTGGGTAATTCTGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCCAGTGAGTATAGAAACGGAGCTGATGATGGAGCAGGTAAAGGAGCATTACCAAGACCTCAGGACCCAGCTGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AGACCAAGGTAAATTACTACGAAAGGGAAATTGCGGCACTGAAAAGGAACTTTGAGAAGGAGAGGAAGGACATG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GAGCAGGCTCGCAGGCGCGAGGTCAGCGTGCTGGAGGGTCAGAAGGCCGACCTGGAGGAGCTCCACGAGAAGTC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TCAGGAGGTCATCTGGGGCCTGCAGGAGCAGCTGCAGGACACAGCCCGCGGCCCCGAGCCTGAGCAGATGGGCC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TGGCACCCTGCTGCACCCAGGCACTGTGTGGCCTGGCCCTGCGGCATCACAGCCACCTGCAGCAGATCAGGAGA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GGAAGTGCCTGGTCATCGCAGACAGGCTGCTGCTCAGCTGGCACCCACTGTCCTGTGGAGAGCATTGGCCCCGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CTTAGAAGAGGACGGGCCCTCCCACCACACTGGCCAGGCCACCCCCAGCCTGACAGAAAGTCATCTTTCCGGCC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GGATGCGGTGGCTCACACCTGTAATCAGCACTTTGGGAGGCCAAGGCGGGAGAGAGGCTGAGGCGGAGCTGAGT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GGAGAGCTGTCGGGGCTGGGAGCCCTGCCCGCTCGCAGAGACCTGACCTTGGAGCTGGAGGAGCCGCCGCAGGG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ACCCCTGCCACGCGGGAGCCAGAGGTCGGAGCAGCTGGAGCTGGAGAGGGCACTGAAGCTGCAGCCCTGTGCGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GCGAGAAGCGCGCCCAGATGTGCGTATCGTTGGCCCTCGAGGAGGAGGAGTTGGAGCTTGCCCGCGGGAAGCGA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GTGGACGGGCCCTCCCTGGAAGCAGAGATGCAGGCCCTGCCGAAAGATGGGCTGGTGGCAGGAAGTGGCCAGGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GGGCACACGTGGCCTCCTACCACTGCGTCCGGGCTGTGGGGAGCGGCCACTGGCCTGGCTGGCCCCAGGTGATG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GCAGAGAGTCTGAGGAGGCGGCAGGAGCCGGGCCTCGCCGCAGGCAAGCCCAGGACACAGAAGCTACGCAGAGC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CCGGCCCCCGCCCCTGCCCCGGCATCCCACGGCCCCTCAGAGAGGTGGTCACGCATGCAGCCCTGTGGAGTGGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGGGGATATTGTCCCAAAGGAGCCAGAGCCTTTCGGCGCGAGCGCAGCGGGGCTGGAGCAGCCTGGAGCCCGGG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGCTGCCTCTGCTGGGAACAGAGAGAGACGCCTCGCAAACCCAGCCACGGATGTGGGAGCCACCCCTGAGGCCG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GCCGCTTCGTGCAGGGGACAGGCTGAGAGGCTACAGGCCATTCAGGAAGAGCGAGCACGAAGCTGGAGCAGGGG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CACCCAGGAGCAGGCCTCGGAGCAGCAGGCCCGGGCCGAGGGCGCCCTGGAGCCTGGGTGTCACAAGCACAGTG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGGAGGTTGCCAGGAGAGGGTCCTTGCCATCCCACCTCCAGCTCGCAGACCCGCAGGGTTCCTGGCAGGAGCAG  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CTTGCTGCCCCAGAAGAGGGGGAGACCAAAATAGCGCTGGAGAGAGAGAAGGATGACATGGAAACCAAACTTCT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ACATCTGGAAGACGTCGTCCGGGCTCTGGAGAAACATGTAGATTTGAGAGAGAACGACAGACTGGAGTTCCATA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  GACTTTCTGAAGAAAACACTTTGTTGAAAAACGATCTGGGAAGGGTTCGGCAAGAGCTTGAAGCTGCAGAAAGT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  ACTCACGATGCACAGAGGAAGGAAATTGAGGTTTTAAAGAAAGACAAGGAAAAGGCCTGCTCTGAGATGGAGGT  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  GCTCAACAGACAGAATCAGAACTACAAGGATCAATTATCCCAGCTCAATGTCAGGGTTCTTCAACTGGGACAGG  3700

Query    1  --------------------------------------------------ATGTTAACACAGAGCCTGGAGGAG  24
                                                              ||||||||||||||||||||||||
Sbjct 3701  AGGCTTCTACCCACCAGGCCCAAAACGAGGAGCATCGTGTGACCATTCAGATGTTAACACAGAGCCTGGAGGAG  3774

Query   25  GTGGTTCGCAGTGGGCAGCAGCAGAGTGACCAAATCCAAAAACTTAGAGTTGAACTTGAATGCCTGAATCAGGA  98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775  GTGGTTCGCAGTGGGCAGCAGCAGAGTGACCAAATCCAAAAACTTAGAGTTGAACTTGAATGCCTGAATCAGGA  3848

Query   99  ACATCAGAGCCTGCAGCTGCCATGGTCAGAGCTGACCCAGACCCTTGAGGAAAGTCAAGACCAGGTG--GGTGT  170
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||   
Sbjct 3849  ACATCAGAGCCTGCAGCTGCCATGGTCAGAGCTGACCCAGACCCTTGAGGAAAGTCAAGACCAGGTGCAGG---  3919

Query  171  GAGC------GATGGCTGGAGGCACTGGGTCCAGTCCCA------------------CCTGG------------  208
            ||||      || |||| ||||||   ||.||||.||||                  .||||            
Sbjct 3920  GAGCTCACCTGA-GGCT-GAGGCA---GGCCCAGGCCCAGCACTTGCAGGAGGTCCGGCTGGTGCCCCAGGACC  3988

Query  209  --------GAGCAGCATCACCG----------------------------------------------------  222
                    ||||.|||||.||.                                                    
Sbjct 3989  GTGTGGCCGAGCTGCATCGCCTGCTCAGCCTTCAGGGAGAGCAGGCCAGGAGGCGCCTGGATGCACAGCGGGAA  4062

Query  223  --------------------------------------------------------------------------  222
                                                                                      
Sbjct 4063  GAACATGAGAAACAGCTGAAAGCCACAGAAGAGCGGGTGGAAGAGGCGGAGATGATTCTGAAGAATATGGAAAT  4136

Query  223  --------------------------------------------------------------------------  222
                                                                                      
Sbjct 4137  GCTCCTCCAAGAGAAAGTGGATAAGCTGAAGGAGCAGTTTGAAAAGAACACGAAGTCCGACCTGCTGCTGAAGG  4210

Query  223  --------------------------------------------------------------------------  222
                                                                                      
Sbjct 4211  AGCTGTACGTGGAGAACGCCCACCTGGTGAGAGCACTTCAGGCCACCGAGGAGAAGCAGCGAGGCGCCGAGAAA  4284

Query  223  --------------------------------------------------------------------------  222
                                                                                      
Sbjct 4285  CAAAGCCGCCTCTTGGAAGAAAAAGTTCGCGCTCTCAACAAACTCGTCAGTAGGATTGCCCCCGCAGCCCTCTC  4358

Query  223  ----  222
                
Sbjct 4359  TGTG  4362

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