Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14269
Subject:
XR_001785550.1
Aligned Length:
2741
Identities:
1229
Gaps:
1314

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACGGAAGAGCGAGCACGGGGTGACGTAGCTCAGTTGCAACGTGCTTTAAGTCTGGGTCTGCACTCCGGTCCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTACGGTGTGACACTGACCGCTGTGTTCCGTGTAGTCGAACCTTCTGTGCTTTCGGGAGCGGGACGCGGAGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGTCCCGTGGGAACTGCTCGGGGCGCGGAGGGAAGAGCGACAGGAGCGCATGACGGCAGGACTGCGCGGCTG  222

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct  223  AAAAAGGCTGCTCTCGGGGACTGTGAGCCGGGACGTAGCCCGGCATCCCGTGGAACCCTGTCCGGTCTCGCCAT  296

Query    3  GCTGGGGGTCCGCTGCCTGCTGCGGTCCG-TGCGCTTCTGTTCCTCCGCCCCCTTCCCCAAGCACAAACCTTCA  75
            |||.||||.|||..||||||| |||..|| |||||.||||||||||||...|||.|||||.||.|....|.||.
Sbjct  297  GCTCGGGGCCCGGCGCCTGCT-CGGCGCGCTGCGCCTCTGTTCCTCCGTTTCCTGCCCCAGGCCCCGCGCGTCT  369

Query   76  GCCAAACTGAGCGTGCGGGACGCTCTCGGGGCTCAGAACGCGAGTGGGGAGCGCATTAAGATCCAGGGATGGAT  149
            ||||||.||.|||||||||||||.|||.|||..|||.|||||||.||||||.||.|.|.|.|.|||||||||||
Sbjct  370  GCCAAAATGCGCGTGCGGGACGCCCTCAGGGTCCAGGACGCGAGAGGGGAGTGCGTAACGGTGCAGGGATGGAT  443

Query  150  TCGTTCTGTCCGATCCCAGAAGGAAGTCTTGTTCCTGCATGTAAATGATGGGTCATCTTTGGAAAGCCTTCAGG  223
            .||.||.|||.||||||||||||||||.||||||||||||||||||||.||.||.||||||||||||||||||.
Sbjct  444  CCGGTCCGTCAGATCCCAGAAGGAAGTTTTGTTCCTGCATGTAAATGACGGATCTTCTTTGGAAAGCCTTCAGA  517

Query  224  TTGTTGCAGATTCAGGCCTTGACAGTAGAGAATTAACTTTTGGGAGTTCTGTGGAAGTACAAGGGCAGCTGATA  297
            |||||||.||||||.||.|.||||||||||||||.||||||||||||||||||.||||.||||||||||||.|.
Sbjct  518  TTGTTGCGGATTCAAGCTTCGACAGTAGAGAATTGACTTTTGGGAGTTCTGTGCAAGTCCAAGGGCAGCTGGTC  591

Query  298  AAAAGTCCATCCAAAAGGCAAAATGTGGAACTGAAGGCAGAAAAAATTAAAGTTATTGGAAATTGTGATGCCAA  371
            |||||||..|||||.|||||||||||||||||||||||||||||.|||.|.|||||||||.|.|||||.|||||
Sbjct  592  AAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGAAGGCAGAAAAGATTGAGGTTATTGGAGACTGTGAAGCCAA  665

Query  372  GGATTTCCCCATCAAATATAAAGAGAGGCATCCTCTGGAGTACCTGCGACAATATCCTCACTTTAGGTGTAGGA  445
            ||..|||||.||.||.|||||.|||.|.||.|||||||||||||||.||||.|||||||||.|.|||||.||||
Sbjct  666  GGCATTCCCTATAAAGTATAAGGAGCGACACCCTCTGGAGTACCTGAGACAGTATCCTCACCTGAGGTGCAGGA  739

Query  446  CTAACGTTCTGGGTTCTATATTGAGGATTCGCAGTGAAGCGACAGCTGCTATTCATTCTTTCTTTAAGGACAGT  519
            ||||.|.|||||||||||||||||||.|.|||||||||||.|||||||||||||||||.|.|||||||||||.|
Sbjct  740  CTAATGCTCTGGGTTCTATATTGAGGGTCCGCAGTGAAGCCACAGCTGCTATTCATTCCTACTTTAAGGACAAT  813

Query  520  GGCTTTGTACATATTCATACTCCAATAATCACATCCAATGACTCTGAGGGAGCTGGAGAACTTTTTCAACTTGA  593
            ||||||||.||.||||||||.|||.||.||||||||||.||||.||||||.||.|||||.|||||||||.|.||
Sbjct  814  GGCTTTGTGCACATTCATACCCCAGTACTCACATCCAACGACTGTGAGGGGGCCGGAGAGCTTTTTCAAGTGGA  887

Query  594  ACCTTCAGGCAAACTTAAGGTACCTGAGGAGAATTTCTTCAATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  667
            .||||||.|||||.|.||||.|||..||||||.||||||..|||||||||||||||||||||||||||||||||
Sbjct  888  GCCTTCAAGCAAAATAAAGGGACCCAAGGAGAGTTTCTTTGATGTTCCTGCTTTCTTAACTGTCTCAGGACAAC  961

Query  668  TTCATCTAGAAGTGATGTCAGGAGCTTTTACTCAAGTGTTTACCTTTGGTCCGACCTTCCGAGCTGAAAATTCT  741
            ||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||.|||||||||||.||||||
Sbjct  962  TTCACCTAGAAGTGATGTCAGGAGCTTTTACCCAAGTATTTACCTTTGGTCCAACATTCCGAGCTGAGAATTCT  1035

Query  742  CAGAGCCGGAGGCACCTGGCAGAGTTTTATATGATAGAAGCAGAGATTTCTTTTGTTGACAGCCTTCAAGATCT  815
            |||||||||||.||||||||.||.|||||||||.|.|||||.|||||||||||||||||.||||||||.|||||
Sbjct 1036  CAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGGAGATTTCTTTTGTTGAAAGCCTTCAGGATCT  1109

Query  816  TATGCAGGTTATAGAGGAACTGTTCAAGGCTACAACAATGATGGTTCTCTCAAAATGTCCTGAAGATGTTGAAC  889
            .||||||||.||.||||||||.||||||||.||.||...|||||||||||||.|.||||||||||||||||||.
Sbjct 1110  CATGCAGGTCATGGAGGAACTCTTCAAGGCGACCACGGAGATGGTTCTCTCACACTGTCCTGAAGATGTTGAAT  1183

Query  890  TCTGTCACAAATTCATAGCACCTGGCCAAAAGGACAGATTAGAACATATGCTAAAAAACAACTT----------  953
            |.||||||.|.||||||||..|||||||.||||.||||.|||||||||||||||||||||||||          
Sbjct 1184  TGTGTCACCAGTTCATAGCTGCTGGCCAGAAGGGCAGACTAGAACATATGCTAAAAAACAACTTCCTAATGTTT  1257

Query  954  --------------------------------------------------------------------------  953
                                                                                      
Sbjct 1258  CTCTTCAGATGTCACCAACTCAGAGTGCCTTTCCTGAACATCTCCTCTAAAATGGCAGACACCTGCCCTACTGT  1331

Query  954  ---------------------------------------------------TTTAAT-----------------  959
                                                               ||||||                 
Sbjct 1332  ATCCCTACTGTATTTTTCTTTGTAATAGTTCTCTATCACCGTTGTTATTTGTTTAATTTGCCCCACACATCAGC  1405

Query  960  --------------------------------------------------------------------------  959
                                                                                      
Sbjct 1406  GCACATGTCTTGGCCCCAAGAAGATGCCCTCTGCCCTCACATACACACATCTTGGCTCCAAGAAGGCAGGAGCT  1479

Query  960  --------------------------------------------------------------------------  959
                                                                                      
Sbjct 1480  TTATTTTGTTTGTCATTTTCCAGTACCTAGAGTAATACTTAGCATCTGGTAGCTGTGACATACATGATTGCTAG  1553

Query  960  ----CATTTCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTAC-CCCAGAGTG  1028
                ||||||||||||.||.|||.|.||||||||||||||||||||||||||||||.||||||| |||| ||||
Sbjct 1554  ACGACATTTCTTATACGGAGGCAATTGAGATCTTAAAGCAAGCATCCCAGAACTTCGCCTTTACACCCA-AGTG  1626

Query 1029  GGGTGCTGACCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTA  1102
            |||||.|||.||||..||.||||||||.|||||||||||||..|||||||||||||||||.|||||.||.||||
Sbjct 1627  GGGTGTTGATCTACAAACGGAACATGAGAAGTACCTGGTGAGACACTGTGGCAACATACCAGTCTTTGTCATTA  1700

Query 1103  ATTATCCATTAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGTTGCTGCTGTT  1176
            |||||||||.|..|||||||||.||||||||||||||.|||||||||||.||||||.|.||.|||||||||||.
Sbjct 1701  ATTATCCATCAGAACTCAAGCCCTTCTACATGAGGGAGAATGAAGATGGTCCTCAGAATACAGTTGCTGCTGTA  1774

Query 1177  GATCTTCTGGTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGA  1250
            ||||||||||||||||||||||||||.|||||||||||..|||||||.||.|||||.|||||..||.|||||.|
Sbjct 1775  GATCTTCTGGTTCCTGGAGTTGGGGAGCTCTTTGGAGGTAGCCTCAGGGAGGAACGGTACCACGTCCTAGAGCA  1848

Query 1251  GCGCTTAGCCAGATCGGGACTTACAGAAGTCTACCAATGGTATCTGGACCTTCGTCGA-TTTGGATCTGTGCCA  1323
            |||..||||.|||||.||||||||..|||.||||||.|||||.|||||.||||| |.| ||||||||||||||.
Sbjct 1849  GCGACTAGCAAGATCAGGACTTACGAAAGCCTACCAGTGGTACCTGGATCTTCG-CAAGTTTGGATCTGTGCCC  1921

Query 1324  CATGGAGGTTTTGGGATGGGATTTGAACGCTACCTGCAGTGCATCTTGGGTGTTGACAATATCAAAGATGTTAT  1397
            ||||||||.||.|||||||||||||||||||||.|.|||||||||.|.||.|||||||||||||||||||||||
Sbjct 1922  CATGGAGGCTTCGGGATGGGATTTGAACGCTACTTACAGTGCATCCTAGGAGTTGACAATATCAAAGATGTTAT  1995

Query 1398  CCCTTTCCCAAGGTTTCCTCA-TCATGCCTTTTA----------------------------------------  1430
            ||||||.|||||||||.|||| ||.||.|||||.                                        
Sbjct 1996  CCCTTTTCCAAGGTTTACTCATTCGTGTCTTTTGTAGCTGAAAGACTGTTTAATGGAAAGTGCTCCATCACCTC  2069

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2070  ATCTACACATGAGTATGTGTAGAAAAGACTGGGTGTTTGCAGTCTGGAAATGTGGATTTCAGTGCACAATTCTT  2143

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2144  GTGCTTTGAGATGTACTATATGAAAAATAGAAATGGTCTTGATCATCTTAAGTCAAAGGCTTTTCATGGACAGA  2217

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2218  TAAACTCCCCCAAGGAGAAATACTAAGAGCAAGTGGACTTTCAAATCTGTTACCTCAATTAGGACTGGGCATGT  2291

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2292  TGTCCAGCTAGTGGAGAAGCCGGTTCAGGAGAGTAACTTGAGCCCGGATAACATCTCAAGAAAGAGGAAAGGAA  2365

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2366  GATATGGAAGTGTAGGATCTCAGCGTTCCTCAGGGACTCTGACTTGATAGCCATGTCTCACCCTGCTTTGCCTT  2439

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2440  TCATTGGTAGCTCATTTCCCCTTGTTGTTTGTTTTTTAACAACTAGTGACTAAAAATAAGGTGATGTTGACCCT  2513

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2514  TTTCTTCCTTGCCATTTAAACTTACATGACACCAATCTTATTCTCTGTGCTTTACTCAACTTTATAGAAGAAAA  2587

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2588  TATTCCTTTTCAGAGTCTAAATTGACTAATGAAGTGGCTATTCTGAATTGAACCATTCATCATTGGGTGGTGAA  2661

Query 1431  --------------------------------------------------------------------------  1430
                                                                                      
Sbjct 2662  AAAAAATCACATTTAATAACTGTTGATCTTTAGTTTTAAAAGTTAAAGAGCTAAAATTAACCATTTAAACTTGT  2735

Query 1431  ---  1430
               
Sbjct 2736  CAA  2738

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