Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_14803
• Subject: NM_001323320.2
• Aligned Length: 1456
• Identities: 824
• Gaps: 510

Alignment

Query    1  ATGGCTGACCTAATAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGACCTCAGAA  74
                                                                     ||.|.||||    ||.|
Sbjct    1  ---------------------------------------------------------ATGAGCAGA----AGCA  13

Query   75  AG-GTGAGGTGC-----TGTTTCT------GAGCATTCCCAATT-GCGCTTCTACCAAATATTTAGCTGTGCTT  135
            || ||||    |     |.|||.|      |||        ||| |.|.||||||     |||.| |.||    
Sbjct   14  AGCGTGA----CAACAATTTTTATAGTGTAGAG--------ATTGGAGATTCTAC-----ATTCA-CAGT----  65

Query  136  GCCCCT--AACAGCCTGTTATCCTCTTTTAGGTAACTGTAAAAATGAAGACCAAATGAATAATTCAGCTCAGTA  207
               |||  |||     |.||||                 |.||.|.||.|||                    ||
Sbjct   66  ---CCTGAAAC-----GATATC-----------------AGAATTTAAAACC--------------------TA  94

Query  208  TAATCTGAGGA-CTTATTTTTCTAGGGATGGTGATCCGTTTCACACCTTCCACAAGCCAAGAGCTGGGTTTGAA  280
            ||..||.|||| |       ||.|||.||.|| ||.||     ||.|||         |.||            
Sbjct   95  TAGGCTCAGGAGC-------TCAAGGAATAGT-ATGCG-----CAGCTT---------ATGA------------  134

Query  281  TTGCCAACTTTCTTGTA--CAAAGTTGGCATTAT-AAGANAGCTNNG-------TTT--GAAT--------TGC  334
             |||||   ||||||.|  .||.||| |||  || |||| ||||..|       |||  ||||        |||
Sbjct  135  -TGCCA---TTCTTGAAAGAAATGTT-GCA--ATCAAGA-AGCTAAGCCGACCATTTCAGAATCAGACTCATGC  200

Query  335  CAA------CT------------TNCTTNTACAANNTNNNGCAACGAACAGGTCACTATCNNTNANAANAAAAN  390
            |||      ||            |.|||.|..||..|              ||.|  |||    |.||.||.|.
Sbjct  201  CAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGT--------------GTTA--ATC----ACAAAAATAT  254

Query  391  CATTG--CTTATCAATATTNNNNNNNCNGNNNANNTCNCTATCAGTATANNNANNNGTATTACANNNTCAT--A  460
            .||||  |||.|.|||.||.......|. ...|..||.|||..||.||....|...|| |||||...||||  |
Sbjct  255  AATTGGCCTTTTGAATGTTTTCACACCA-CAGAAATCCCTAGAAGAATTTCAAGATGT-TTACATAGTCATGGA  326

Query  461  GCTGTTTCCTGGCAGCTCTGGCCCGTGTCTCAAAATNTNTGCTATCCAGNTGNTNCAAATCGAGGCGCC--GAA  532
            ||    ||.|||..||                ||||.|.||    |||..||.|.||.||.|||    |  ||.
Sbjct  327  GC----TCATGGATGC----------------AAATCTTTG----CCAAGTGATTCAGATGGAG----CTAGAT  372

Query  533  C---AAAAAAGCTCCTACTATTTTGTTAAAAAACCCAAGTCGTTCTATAGCTGTGGATGTGT---ATCTACCAC  600
            |   |||.||..|||||                       |.||||.||.|.|..|.|||||   |||.|.|||
Sbjct  373  CATGAAAGAATGTCCTA-----------------------CCTTCTCTATCAGATGCTGTGTGGAATCAAGCAC  423

Query  601  CTCTTCATTC---------------TCGAGACGGCAGAGCTGCCCGCAAAGCACGTTTTGCTCTAGCA------  653
              ||||||||               |||.||| ..|.|||  ||.|.||            |.|||.|      
Sbjct  424  --CTTCATTCTGCTGGAATTATTCATCGGGAC-TTAAAGC--CCAGTAA------------TATAGTAGTAAAA  480

Query  654  -CTGAT--CTCTTCAAATCATACAAAAGCTATTGACCTC--TCT---------TGTTGTACTAAGTTGGTATTA  713
             |||||  |.|||..|| .||        |.|||||.||  |||         ||..|.|...||||    |||
Sbjct  481  TCTGATTGCACTTTGAA-GAT--------TCTTGACTTCGGTCTGGCCAGGACTGCAGGAACGAGTT----TTA  541

Query  714  TACACAGAGTGA----TTATCATTTGTTGCTTCGTAGTGAC-CGTAGAGAAAAATACACTATTAGTGTCCCCTG  782
            |     || |||    ||||             |||||||| ||              |||.||       |.|
Sbjct  542  T-----GA-TGACGCCTTAT-------------GTAGTGACTCG--------------CTACTA-------CAG  575

Query  783  ATGATCGCCCGACCAGAGAGTCATGAATCTATGGCA-GAACTCCTCCCAACAGTAAGGACTTACGTTGAAAACA  855
            |     ||   |||.||| |||    |||..||||| |..||.|          |||          |||||| 
Sbjct  576  A-----GC---ACCCGAG-GTC----ATCCTTGGCATGGGCTAC----------AAG----------GAAAAC-  615

Query  856  GACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCTTTTCCCAGCTGACTCAGAACACAAC  929
                                                                    ||||||||||||||||||
Sbjct  616  --------------------------------------------------------GCTGACTCAGAACACAAC  633

Query  930  AAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAATAGATGCATCTAAAAGGATCTCTGT  1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  634  AAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAATAGATGCATCTAAAAGGATCTCTGT  707

Query 1004  AGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCTGAAGCAGAAGCTCCACCACCAAAGA  1077
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  708  AGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCTGAAGCAGAAGCTCCACCACCAAAGA  781

Query 1078  TCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAAAGAATTGATATATAAGGAAGTTATG  1151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  782  TCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAAAGAATTGATATATAAGGAAGTTATG  855

Query 1152  GACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTCCTTTAGGTGCAGCAGTGATCAATGG  1225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  856  GACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTCCTTTAGGTGCAGCAGTGATCAATGG  929

Query 1226  CTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTTCAATGTCAACAGATCCGACTTTGGCCTCTG  1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  930  CTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTTCAATGTCAACAGATCCGACTTTGGCCTCTG  1003

Query 1300  ATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGCTGTAGA  1349
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004  ATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGCTGTAGA  1053