Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14883
Subject:
NM_001137608.3
Aligned Length:
1773
Identities:
1264
Gaps:
369

Alignment

Query    1  ATGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct    1  ATGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGCCCA  74

Query   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGTTGCTATCTCTAACC  148
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGATCTCCCTGGGTGTTGCTATCTCTAACC  148

Query  149  CAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGACCC  222
            ||||||||||||.||.|||||||||||||||.|||||||||||.||||||||||||.|||..|||||||.||.|
Sbjct  149  CAGACCTGGTCATCTATCTGGAGCAAAGAAAGGAGCCCTACAAAGTGAAGATACATGAGACAGTAGCCAAACAC  222

Query  223  CCAGCTATGTGTTCTCATTTCACCCAAGACCATTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTAT  296
            ||||||.|||||||||||||||||||||||..||.||||||||||||.|||||||||||.||||||||||||||
Sbjct  223  CCAGCTGTGTGTTCTCATTTCACCCAAGACTTTTTGCCAGTGCAGGGGATAGAAGATTCGTTCCACAAACTTAT  296

Query  297  ACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATTAAGAAAAGGCTGTAAAAGTTTGAATGAGTGTA  370
            |.|.||||||||||||||||||||||||||.||||||.|||||||||||.|||||||||            |.|
Sbjct  297  ATTAAGAAGATATGAGAAATGTGGACATGAGAATTTAGAATTAAGAAAAAGCTGTAAAA------------GGA  358

Query  371  AGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGTCAACTACCCAGAGCAAAATACTTCAGTGTAAA  444
            ||.|||||||||||||||||||||||||||||.|||||||||||||||.|||||||||||||.||||||||||.
Sbjct  359  AGGTGCAGAAAGGAGGTTATAATGAATTTAATCAATGCTTGTCAACTATCCAGAGCAAAATATTTCAGTGTAAT  432

Query  445  GCAAGTGTCAAAGTTGTTAGTAAATTTTCAAATTCAAACAAACGTAAGACAAGACATACTGGAGAGAAACACTT  518
            |.|..|||||||||..||||||.||||||||||||||||.||||||.||.||||||||||||||||||||||||
Sbjct  433  GTACATGTCAAAGTATTTAGTACATTTTCAAATTCAAACCAACGTAGGATAAGACATACTGGAGAGAAACACTT  506

Query  519  TAAAGAATGTGGCAAATCATTTCAGAAGTTTTCACACCTAACTCAACAT-AAGGTAATTCATGCTGGAGAGAAA  591
            |||||||||||||||.||||||||||||||.|||.|||||||||||||| |||| |||||||||||||||||||
Sbjct  507  TAAAGAATGTGGCAAGTCATTTCAGAAGTTCTCAGACCTAACTCAACATCAAGG-AATTCATGCTGGAGAGAAA  579

Query  592  CCCTACACTTGTGAAGAATGTGGCAAAGCCTTTAAATGGTCTTTAATATTTAATGAACATAAGAGAATTCATAC  665
            ||||||||.|||||||||||||||||||.|||||||||||.||||||.|||||||||.||.|||.|||||||||
Sbjct  580  CCCTACACATGTGAAGAATGTGGCAAAGACTTTAAATGGTATTTAATCTTTAATGAATATGAGATAATTCATAC  653

Query  666  TGGAGAGAAACCTTTTACTTGTGAAGAATGTGGCAGCATCTTTACCACATCCTCACACTTTGCTAAGCATAAAA  739
            ||||||||||||.||.||.||||||||||||||||.|||||||||||||||||||.||||||||||.|||||  
Sbjct  654  TGGAGAGAAACCCTTCACATGTGAAGAATGTGGCAACATCTTTACCACATCCTCAAACTTTGCTAAACATAA--  725

Query  740  TAATTCATACTGGAGAAAAACCCTATAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTTCACAACCCTTACT  813
             |.|||||||||||||.|||.|.||.||||.|||||||||||||||||||||||||||||.|.|||||||||||
Sbjct  726  -AGTTCATACTGGAGAGAAATCTTACAAATATGAAGAATGTGGCAAAGCCTTTAATAGGTCCTCAACCCTTACT  798

Query  814  AAACATAAGAGAATTCATGCTGGAGAGAAACCCATCACATGTGAAGAATGTAGGAAAATCTTTACCTCATCCTC  887
            ||.|||||||||||||||||||.||||||||||.|||||||||||||||||.|.||||||.|||||||||||||
Sbjct  799  AAGCATAAGAGAATTCATGCTGAAGAGAAACCCTTCACATGTGAAGAATGTGGCAAAATCATTACCTCATCCTC  872

Query  888  AAACTTTGCNAAACATAAGCGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTA  961
            |||..||||.|||||||||..|||||||||.||||||||||.||||||||||.|.|||||||||||||.|||||
Sbjct  873  AAATGTTGCCAAACATAAGAAAATTCATACCGGAGAGAAACTCTACAAATGTCAGGAATGTGGCAAAGTCTTTA  946

Query  962  ATAGGTCCACAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGC  1035
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  947  ATAGGTCCACAACCCTTACTAAACATAACAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGC  1020

Query 1036  AAAGCTTTTAGACAGTCCTCAAAACTGAATGAACATAAGAAAGTTCATACTGGAGAGCGGCCCTACAAATGTGA  1109
            |||||.|||||...|||||||...||||||||||||||||.|.||||||||||||||..|||||||||||||||
Sbjct 1021  AAAGCCTTTAGTAGGTCCTCAGTTCTGAATGAACATAAGAGAATTCATACTGGAGAGAAGCCCTACAAATGTGA  1094

Query 1110  TGAATGTGGCAAAGCCTTTGGACGGTCC-------------------AGGGT----------------------  1142
            ..|||||||||||||||||.|||..|||                   ||.||                      
Sbjct 1095  ACAATGTGGCAAAGCCTTTAGACAATCCGCAACCCTTAATAAACATAAGAGTATTCATACTGGAGAGAAACCCT  1168

Query 1143  -------------------------------------------CCTGAATGAACATAAAAAAATTCATACTGGA  1173
                                                       |||.|||||||||||.|.|||||||||||||
Sbjct 1169  ACACATGTGAAGAATGTGGAAAAGCCTTTAGTCGGTTCACAACCCTTAATGAACATAAGAGAATTCATACTGGA  1242

Query 1174  GAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGATCGGAGTCAACATAAGAAAAT  1247
            ||||..|||.|||||||||||||.|||||||||||||||.||.||||||||||.|.||.|.|||||||||.|||
Sbjct 1243  GAGAGGCCCCACAAATGTGAAGAGTGTGGCAAAGCCTTTGGATGGTCCACAGACCTGAATAAACATAAGATAAT  1316

Query 1248  TCATAGTGCAGATAAACCCTACAAATGTAAAGAATGTGACAAAGCCTTTAAACAATTTTCGCTCCTGAGTCAAC  1321
            |||||.||.|||.|||||.|||||||||.||||.||||.||||||||||..|...|.|.|...|||||||.|||
Sbjct 1317  TCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGGCAAAGCCTTTGGATGGTCTGCATACCTGAGTAAAC  1390

Query 1322  ATAAGAAAATTCATACTGTAGATAAACCCTANAAATGTAAAGATTGTGACAAAGCCTTTAAACGGTTCTCACA-  1394
            ||||||||||||||||||.|||.|||||.||.|.||||.||||.||||.||||||||||..| .|||| ||.| 
Sbjct 1391  ATAAGAAAATTCATACTGGAGAGAAACCTTATAGATGTGAAGAGTGTGGCAAAGCCTTTTTA-TGTTC-CAGAG  1462

Query 1395  -CCTGAATAAACATAAGAAAATTCATACT---------------------------------------------  1422
             |||||||||||||||||.||||||||||                                             
Sbjct 1463  CCCTGAATAAACATAAGACAATTCATACTGGAGAGAAACCTTACGAATGTGAAGAGTGTGGCAAAGCCTTTGGA  1536

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1537  TGGTCCACATACCTGAGTAAACATAAGAAAATTCATACTGGAGAGAAACCTTATAGATGTGAAGAGTGTGGCAA  1610

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1611  AGCATTTAGACGTTCCAGAGTCCTGAATAAATATAAGACAATTCATACTGGAGATAAAACCCCCAAATGTAAAG  1684

Query 1423  -----------------------------------------------------------------------  1422
                                                                                   
Sbjct 1685  GATGTGGCAAAGCCTTTAAGTGGTCCTCATACCTTAATCAACATAATAAAATTTATACTGGAGAGAAACTC  1755

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