Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14883
Subject:
NM_001286052.1
Aligned Length:
1960
Identities:
1164
Gaps:
650

Alignment

Query    1  ATGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCA  74
            |||||||||.|||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||||.|||
Sbjct    1  ATGGAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCA  74

Query   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGTTGCTATCTCTAACC  148
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTG-------------------  129

Query  149  CAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGACCC  222
                                                                                      
Sbjct  130  --------------------------------------------------------------------------  129

Query  223  CCAGCTATGTGTTCTCATTTCACCCAAGACCATTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTAT  296
               |||||.|||||||.|||||.||||||||.||..|||||||||||.||||||||||||||||||||||||||
Sbjct  130  ---GCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTAT  200

Query  297  ACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATTAAGAAAAGGCTGTAAAAGTTTGAATGAGTGTA  370
            |||||.||||||.|||||||||||||||||.|||||||||||||||||||||||||||.||.||||||||||||
Sbjct  201  ACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGCTGTAAACGTGTGAATGAGTGTA  274

Query  371  AGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGTCAACTACCCAGAGCAAAATACTTCAGTGTAAA  444
            ||.||||||||||||.|.||||||.|.||.|..|.|||||||||||||||||||||||||||.||||.|||||.
Sbjct  275  AGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAAT  348

Query  445  GCAAGTGTCAAAGTTGTTAGTAAATTTTCAAATTCAAACAAACGTAAGACAAGACATACTGGAGAGAAACACTT  518
            .||.||||.||||||.|||||||||||||||||||||||||||.|||||.||||||||||||||||||||.|||
Sbjct  349  ACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAACCCTT  422

Query  519  TAA------AGAATGTGGCAAATCATTTCAGAAGTTTTCACACCTAACTCAACATA-AGGTAATTCATGCTGGA  585
            |||      |||||||||||.|||.|||.|.|   |.||||||||||||||||||| ||| |||||||||||||
Sbjct  423  TAAATGTACAGAATGTGGCAGATCGTTTTACA---TGTCACACCTAACTCAACATACAGG-AATTCATGCTGGA  492

Query  586  GAGAAACCCTACACTTGTGAAGAATGTGGCAAAGCCTTTAAATGGTCTTTAATATTTAATGAACATAAGAGAAT  659
            |||||||||||||..||||||.|||||||||||||||||||..||||...|..|.|||.|.|||||||||||||
Sbjct  493  GAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAATAGGTCCACATCACTTAGTAAACATAAGAGAAT  566

Query  660  TCATACTGGAGAGAAACCTTTTACTTGTGAAGAATGTGGC--AGCATCTTTA------CCACA--TC-------  716
            ||||||||||||||||||.|..||.|||||||||||||||  |||  |||||      |||||  ||       
Sbjct  567  TCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGC--CTTTAGACGGTCCACAGTTCTGAACGA  638

Query  717  -----------CTCACACT-----------------------------TTGCTAAG------------------  732
                       .|||.|||                             |.||.|||                  
Sbjct  639  ACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAAGGTCCACAA  712

Query  733  -----------CATAAAATAATTCATACTGGAGAAAAACCCTATAAATGTGAAGAATGTGGCAAAGCCTTTA-A  794
                       ||.||.|.|||||||||||||||.||||||||.||||||.||||||||||||||||||||| |
Sbjct  713  CACTGAATGAACACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGA  786

Query  795  TAGGTTCACAACCCTTACTAAACATAAGAGAATTCATGCTGGAGAGAAACCC-----AT---------------  848
            | |||.|||||.|||.|.|.|||||||||..||||||.||||||||||||||     ||               
Sbjct  787  T-GGTCCACAAGCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCA  859

Query  849  ----------------------------------------------------------------CACATGTGAA  858
                                                                            ||||||||||
Sbjct  860  AAGCCTTTAGACAGTCCAGGAGCCTGAATGAACATAAAAATATTCATACTGGCGAAAAACCCTACACATGTGAA  933

Query  859  GAATGTAGGAAAATCTTT--ACCTCATCCTC-------------------------------------AAACTT  893
            .||||| ||.|||.||||  ||| .||||||                                     ||||||
Sbjct  934  AAATGT-GGCAAAGCTTTTAACC-AATCCTCAAGTCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTT  1005

Query  894  TGC-----------------------------------------------NAAACATAAGCGAATTCATACTGG  920
            |.|                                               .|||||||||.|||||||||||||
Sbjct 1006  TACAAATGTGAAGAATGTGGCAAAGCCTTTACTTGGTCCTCATCCCTTAATAAACATAAGAGAATTCATACTGG  1079

Query  921  AGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTCCACAACCCTTACTAAACATAAGAGAA  994
            ||||||||||||||.|||||||||||||||||||||.|||.||||||||.||..||||.|||||||||||||||
Sbjct 1080  AGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCTTTTTATAGGTCCTCACACCTTGCTAAACATAAGAGAA  1153

Query  995  TTCATACTGGAGAGAAACCCTACAC-------------------------------------------------  1019
            |||||||||||||||||||||||||                                                 
Sbjct 1154  TTCATACTGGAGAGAAACCCTACACGTGCGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAACTCTTATATTA  1227

Query 1020  -----------------------------------ATGTGAAGAATGTGGCAAAGCTTTTAGACAGTCCTCAAA  1058
                                               |||||||||||||||||||||.||||.||.||||.|||.
Sbjct 1228  CACAAGAGAATCCATTCTGGGCAAAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTACACGGTCCACAAC  1301

Query 1059  ACTGAATGAACATAAGAAAGTTCATACTGGAGAGCGGCCCTACAAATGTGATGAATGTGGCAAAGCCTTTGGAC  1132
            ||||||.||||||||||||.||||||||||.|||...||||||||||||||.||||||||||||||.||...|.
Sbjct 1302  ACTGAACGAACATAAGAAAATTCATACTGGCGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCATAT  1375

Query 1133  GGTCC---AGGGTCCTGAATGAACATAAAAAAATTCATACTGGAGAGAAACCC---------------------  1182
            |||||   ||   |||||||||||||||.||.|||||||||||||||||||||                     
Sbjct 1376  GGTCCGCAAG---CCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGC  1446

Query 1183  ---------------------------------------------------------------TACAAATGTGA  1193
                                                                           |||||||||||
Sbjct 1447  AAAGCTTTTAACCAATCCTCAGGCCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGA  1520

Query 1194  AGAATGTGGCAAAGCCTTTAGACGGTCCACAGATCGGAGTCAACATAAGAAAATTCATAGTGCAGATAAACCCT  1267
            ||||||||||||||||||||..||||||||||..|.||.|.|||||||||||||||||..||.|||.|||||||
Sbjct 1521  AGAATGTGGCAAAGCCTTTACTCGGTCCACAGCCCTGAATGAACATAAGAAAATTCATTCTGGAGAGAAACCCT  1594

Query 1268  ACAAATGTAAAGAATGTGACAAAGCCTTTAAACAATTTTCGCT----CCTGAGTCAACATAAGAAAATTCATAC  1337
            |||||||.||||||||||.||||||||.||   |.||.|| ||    |||.|.|.|||||||||.|||||||||
Sbjct 1595  ACAAATGCAAAGAATGTGGCAAAGCCTATA---ACTTATC-CTCAACCCTTACTAAACATAAGAGAATTCATAC  1664

Query 1338  TGTAGATAAACCCTANAAATGTAAAGATTGTGACAAAGCCTTTAAACGGTTCTCACACCTGAATAAACATAAGA  1411
            ||.|||.|||||||..|.||||.||||.||||.|||||||||.||..|||.||||..|||.|.|||||||||||
Sbjct 1665  TGGAGAGAAACCCTTCACATGTGAAGAATGTGGCAAAGCCTTCAATTGGTCCTCATCCCTTACTAAACATAAGA  1738

Query 1412  AAATTCATACT---------------------------------------------------------------  1422
            .||||||||||                                                               
Sbjct 1739  TAATTCATACTGGAGAGAAATCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGCCCTCAACCCTTACT  1812

Query 1423  ------------------------------------  1422
                                                
Sbjct 1813  GTACACAAGCGAATTCATACTGGCAAGGAACATAGT  1848

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