Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14883
Subject:
NM_133474.4
Aligned Length:
2975
Identities:
1069
Gaps:
1759

Alignment

Query    1  ATGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGACCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTGTTGCTATCTCTAACC  148
                                  |||||||||||||||||.||||||||||||||                    
Sbjct    1  ----------------------ATGTTGGAGAACTACAGAAACCTGGTCTCCCT--------------------  32

Query  149  CAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGACCC  222
                                                                                      
Sbjct   33  --------------------------------------------------------------------------  32

Query  223  CCAGCTATGTGTTCTCATTTCACCCAAGACCATTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTAT  296
              ||||||||||||||||||||||||||||..||.||||||||||||.||||||||||||||||||||||||||
Sbjct   33  --AGCTATGTGTTCTCATTTCACCCAAGACTTTTTGCCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTAT  104

Query  297  ACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATTAAGAAAAGGCTGTAAAAGTTTGAATGAGTGTA  370
            ||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||||||.||||.|.|||||
Sbjct  105  ACTGAGAAGATATGAGAAATGTGGGCATGATAATTTACAATTAAGGAAAGGCTGTAAAAGTATGAACGTGTGTA  178

Query  371  AGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGTCAACTACCCAGAGCAAAATACTTCAGTGTAAA  444
            |..|||||||.||||.||||||||.|.|||||.||||||||||||.|||.||||||||||||.||||.|||||.
Sbjct  179  AAGTGCAGAAGGGAGTTTATAATGGAATTAATAAATGCTTGTCAAATACTCAGAGCAAAATATTTCAATGTAAT  252

Query  445  GCAAGTGTCAAAGTTGTTAGTAAATTTTCAAATTCAAACAAACGTAAGACAAGACATACTGGAGAGAAACACTT  518
            |||.|||||||||||.|||||||||||.||||||||||||||..||||||||||||||||||||||||||||||
Sbjct  253  GCACGTGTCAAAGTTTTTAGTAAATTTGCAAATTCAAACAAAGATAAGACAAGACATACTGGAGAGAAACACTT  326

Query  519  TAAA------GAATGTGGCAAATCATTTCAGAAGTTTTCACACCTAACTCAACATAAGGTAATTCATGCTGGAG  586
            ||||      |||||||||||.||||||||||||||.|||.||||||||||||||||.|.||||||||||||||
Sbjct  327  TAAATGTAACGAATGTGGCAAGTCATTTCAGAAGTTCTCAGACCTAACTCAACATAAAGGAATTCATGCTGGAG  400

Query  587  AGAAACCCTACACTTGTGAAGAATGTGGCAAAGCCTTTAAATGGTCTTTAATA-----TTTAATGAACATAAGA  655
            |||||||||||||||||||||||.|||||||||.||||..|||||     |.|     .|.|||.||||.||||
Sbjct  401  AGAAACCCTACACTTGTGAAGAACGTGGCAAAGACTTTGGATGGT-----ACACAGACCTGAATCAACACAAGA  469

Query  656  GAATTCATACTGGAGAGAAACCTTTTACTTGTGAAGAATGTGGC--AGC----------------ATCTTTAC-  710
            .|||||||||||||||||||||||..|..|||||||||||||||  |||                |.|.|||| 
Sbjct  470  AAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTCAACAAACCTTACT  543

Query  711  -CACAT------CCTCACA----------------------------------------CTTTG---------C  728
             |||||      ..|||||                                        |||||         |
Sbjct  544  GCACATAAGAGAATTCACAACAGAGAGAAAGCTTACACAGGTGAAGATCGTGACAGAGCCTTTGGATGGTCCAC  617

Query  729  TAAGC---------ATAAAATAATTCATACTGGAGAAAAACCCTATAAATGTGAAGAATGTGGCAAAGCCTTTA  793
            .||.|         ||||.|.|||||||||||||||.||||||||.||||||.||||||||||.||||||||||
Sbjct  618  AAACCTGAATGAATATAAGAAAATTCATACTGGAGATAAACCCTACAAATGTAAAGAATGTGGGAAAGCCTTTA  691

Query  794  ---ATAGGT--TCACAACCCTTACTAAACATAAGAGAATTCATGCTGGAGAGAAACCCATCACATGTGAAGAAT  862
               ||   |  |||||  |||.|.|||||||.|||.|||||||.||||||||||||||..||.||||.|.||||
Sbjct  692  TGCAT---TCCTCACA--CCTGAATAAACATGAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAGGAAT  760

Query  863  GTAGGAAAATCTTTACCTCATCCTCAAACTTTGCNAAACATAAGCGAATTCATACTGGAGAGAAACCCTACAAA  936
            ||.|.|||.||.||.||||||||||||.||||||.|||||||||.|.|||||||||||.||||||||||..|||
Sbjct  761  GTGGCAAAGTCATTTCCTCATCCTCAAGCTTTGCTAAACATAAGAGGATTCATACTGGCGAGAAACCCTTTAAA  834

Query  937  TGTGAAGAATGTGGCAAAGCCTTTAATAGGTCCACAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAA  1010
            |||..|||||||||.|||||||||||||..||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  835  TGTTTAGAATGTGGTAAAGCCTTTAATATTTCCACAACCCTTACTAAACATAGGAGAATTCATACTGGAGAGAA  908

Query 1011  ACCCTACACATGTGAAGAATGTGGCAAAGCTTTTAGACAGTCCTCAAAACTGAATGAACATAAGAAAGTTCATA  1084
            |||||||||||||||||.||||||||||||.||||||||||||.||||.||..|||.|||||.||.|.||||||
Sbjct  909  ACCCTACACATGTGAAGTATGTGGCAAAGCCTTTAGACAGTCCGCAAACCTTTATGTACATAGGAGAATTCATA  982

Query 1085  CTGGAGAGCGGCCCTACAAATGTGATGAATGTGGCAAAGCCTTTGGACGGTCC----AGGGTCCTGAATGAACA  1154
            ||||||||...|||||||.|||||..||||||||||||.|||||.|||.||||    |    |||..|.|.|||
Sbjct  983  CTGGAGAGAAACCCTACACATGTGGAGAATGTGGCAAAACCTTTAGACAGTCCGCAAA----CCTTTACGTACA  1052

Query 1155  TAAAAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGATC  1228
            ||..|.|||||||||||||||||||||.||||||||.|||||.|||||||||||||||.||||||.|||||..|
Sbjct 1053  TAGGAGAATTCATACTGGAGAGAAACCTTACAAATGCGAAGACTGTGGCAAAGCCTTTGGACGGTACACAGCCC  1126

Query 1229  GGAGTCAACATAAGAAAATTCATAGTGCAGATAAACCCTACAAATGTAAAGAATGTGACAAAGCCTTTA-----  1297
            .||.||||||.|||||||||||||.||.|||.|||||.|||||||||.||||.||||.|||||||||||     
Sbjct 1127  TGAATCAACACAAGAAAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGGCAAAGCCTTTAATAGT  1200

Query 1298  --AACAA-------------------------------------------------------------------  1302
              |||||                                                                   
Sbjct 1201  TCAACAAACCTTACTGCACATAAGAGAATTCACACCAGAGAGAAACCCTACACATGTGAAGATCGTGGCAGAGC  1274

Query 1303  TTTTCGCT----------CCTGAGTCAACATAAGAAAATTCATACTGTAGATAAACCCTANAAATGTAAAGATT  1366
            .|||.|.|          |||||.|.||.||||||||||||||||||.||||||||||||.|||||||||||.|
Sbjct 1275  CTTTGGATTGTCCACAAACCTGAATGAATATAAGAAAATTCATACTGGAGATAAACCCTACAAATGTAAAGAAT  1348

Query 1367  GTGACAAAGCCTTTAAACGGTTCTCACACCTGAATAAACATAAGAAAATTCATACT------------------  1422
            |||..||||||||||.||..|.||..|||||||||||||||.||||||||||||||                  
Sbjct 1349  GTGGGAAAGCCTTTATACATTCCTTGCACCTGAATAAACATGAGAAAATTCATACTGGAAAGAAACCCTACAAA  1422

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1423  TGTAAGCAATGTGGCAAAGTCATTACCTCATCCTCAAGCTTTGCTAAACATAAGAGGATTCATACTGGCGAGAA  1496

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1497  ACCCTTTGAATGTTTAGAATGTGGTAAAGCGTTTACTAGTTCCACAACCCTTACTAAACATAGGAGAATTCATA  1570

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1571  CTGGAGAGAAACCCTACACATGTGAAGTATGTGGCAAAGCCTTTAGACAGTCCGCAATCCTTTATGTACATAGG  1644

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1645  AGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAACCTTTAGACAGTCCGCAAACCTTTA  1718

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1719  TGTACATAGGAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGGCAAAGCCTTTGGACGGTACA  1792

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1793  CAGACCTGAATCAACACAAGAAAATTCATACTGGAGAGAAACTTTACAAATGTGAAGAGTGTGGCAAAGACTTT  1866

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1867  GTATGGTACACGGACCTGAATCAACAGAAGAAAATTTACACTGGGGAGAAACCTTACAAATGTGAAGAGTGTGG  1940

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 1941  CAAAGCCTTTGCCCCATCAACAGACCTGAATCAACACACGAAAATTCTTACTGGAGAGCAAAGTTACAAATGTG  2014

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2015  AAGAGTGTGGCAAAGCCTTTGGATGGTCCATAGCCCTGAATCAACACAAGAAAATTCATACTGGAGAAAAACCT  2088

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2089  TACAAATGTGAAGAGTGTGGCAAAGCCTTTAGTAGGTCAAGAAACCTTACTACACATAGGAGAGTTCACACTAG  2162

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2163  GGAGAAACCCTACAAATGTGAAGATCGTGGCAGATCCTTTGGATGGTCCACAAACCTGAACGAATATAAGAAAA  2236

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2237  TTCATACTGGAGATAAACTCTACAAATGTAAAGAATGTGGGAAAGTGTTTAAACAGTCCTCACACCTGAATAGA  2310

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2311  CATGAGAAAATTCATACTGGAAAGAAACCCTACAAATGTAAGGAATGTGGCAAAGTCATTACGTCATCCTCAAG  2384

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2385  CTTTGCTAAACATAAGAGGATTCATACAGGTGAGAAACCCTTTAAATGTTTAGAATGTGGTAAAGCGTTTACTA  2458

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2459  GTTCCACAACCCTTACTAAACATAGGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAA  2532

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2533  GCCTTTAGACAGTCAGCAATCCTTTATGTACATAGGAGAATTCATACTGGAGAGAAACCCTACACATGTGGAGA  2606

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2607  ATGTGGCAAAACCTTTAGACAGTCTGCAAATCTTTATGCGCATAAGAAAATTCATACTGGAGAGAAACCCTACA  2680

Query 1423  --------------------------------------------------------------------------  1422
                                                                                      
Sbjct 2681  CGTGTGGAGACTGTGGCAAAACCTTTAGACAGTCTGCAAATCTTTATGCACATAAGAAAATTCATACTGGAGAT  2754

Query 1423  ---------------  1422
                           
Sbjct 2755  AAAACCATACAAGTG  2769

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.