Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14905
Subject:
XM_017002652.2
Aligned Length:
1509
Identities:
1163
Gaps:
335

Alignment

Query    1  -------------------------------------------ATGG---------TATCTTC----TCAAAAG  18
                                                       ||||         .|.||||    |.|||||
Sbjct    1  ATGCCGCCAGATCCTCTGAGAAGAGAGTGGGCCTTTCCCCTCAATGGGCAAAGAACCAGCTTCCATTTTAAAAG  74

Query   19  ---TTGGAAAAA---------------------------------------CCTAT---------AGAGATGGG  41
               |..||||||                                       |||.|         |||||||||
Sbjct   75  CTCTCAGAAAAAAAAGAAAGAAAAAAAAAAAAAAACACCAACAACCAAGAGCCTGTGTTTATTGAAGAGATGGG  148

Query   42  CAGTAGCGAACCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACT  115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CAGTAGCGAACCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACT  222

Query  116  CCTTGCCAGGAAAGTTTGAAGATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTT  189
            |||||||||||||||||||||                                                     
Sbjct  223  CCTTGCCAGGAAAGTTTGAAG-----------------------------------------------------  243

Query  190  CAAGGTGCCGTGAGCCTACAGAATGGCAAAGAGTATGCCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCG  263
                                                         |||||||||||||||||||||||||||||
Sbjct  244  ---------------------------------------------ATCATCGAGAAACAAGCAGGGCACAGTCG  272

Query  264  GAGTAGGGTGTTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAAGAACATTTTGGAGCTGATTGAGT  337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  273  GAGTAGGGTGTTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAAGAACATTTTGGAGCTGATTGAGT  346

Query  338  TCTTTGAAGATGACACAAGGTTTTACTTGGTCTTTGAGAAATTGCAAGGAGGTTCCATCTTAGCCCACATCCAG  411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  TCTTTGAAGATGACACAAGGTTTTACTTGGTCTTTGAGAAATTGCAAGGAGGTTCCATCTTAGCCCACATCCAG  420

Query  412  AAGCAAAAGCACTTCAATGAGCGAGAAGCCAGCCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCA  485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  AAGCAAAAGCACTTCAATGAGCGAGAAGCCAGCCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCA  494

Query  486  TACCAAAGACAAAGTCTCTCTCTGTCACCTAGGCTGGAGTGCTATGGCGCCATCAGGGCTCACTGCAGCCCCAA  559
            ||||||||.||                                                               
Sbjct  495  TACCAAAGGCA---------------------------------------------------------------  505

Query  560  CCTCCCTGGGCTCCAGTGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACANGCATTTGCTCATNGTGA  633
                                                                         ||||||||.||||
Sbjct  506  -------------------------------------------------------------TTGCTCATCGTGA  518

Query  634  TNTGAAACCAAGNAAAATATATTGTGTGAATCTCCAGGAAAAGGTGTCTCCAGTGAAAAATCTGTGACTTTGAC  707
            |.||||||||  .||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct  519  TCTGAAACCA--GAAAATATATTGTGTGAATCTCCA-GAAAAGGTGTCTCCAGTG-AAAATCTGTGACTTTGAC  588

Query  708  TTGGGCAGTGGGATGAAACTGAACAACTCCTTGTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCT  781
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  589  TTGGGCAGTGGGATGAAACTGAACAACTCC-TGTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCT  661

Query  782  CTGCAGAATACATGGCCCCTGAAGGTAGTNGAGGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGA  855
            ||||||||||||||||||||| |||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct  662  CTGCAGAATACATGGCCCCTG-AGGTAGTGGAGGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGA  734

Query  856  CCTGTGGAGCCTGGGCGTGGTCCTCTACATCATGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCG  929
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  CCTGTGGAGCCTGGGCGTGGTCCTCTACATCATGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCG  808

Query  930  ACTGTGGCTGGGACCGGGGCGAGGTCTGCAGGGTGTGCCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAG  1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  ACTGTGGCTGGGACCGGGGCGAGGTCTGCAGGGTGTGCCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAG  882

Query 1004  TATGAGTTTCCTGACAAGGACTGGGCACACATCTCCAGTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCG  1077
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  TATGAGTTTCCTGACAAGGACTGGGCACACATCTCCAGTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCG  956

Query 1078  AGATGCAAAGCAGAGACTTAGCGCCGCCCAAGTTCTGCAGCACCCATGGGTGCAGGGGCAAGCTCCAGAAAAGG  1151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  AGATGCAAAGCAGAGACTTAGCGCCGCCCAAGTTCTGCAGCACCCATGGGTGCAGGGGCAAGCTCCAGAAAAGG  1030

Query 1152  GACTCCCCACGCCGCAAGTCCTCCAGAGGAACAGCAGCACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATC  1225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  GACTCCCCACGCCGCAAGTCCTCCAGAGGAACAGCAGCACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATC  1104

Query 1226  GCCCTTAACCGCCAGCTATCTCAGCACGAAGAGAACGAACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCT  1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  GCCCTTAACCGCCAGCTATCTCAGCACGAAGAGAACGAACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCT  1178

Query 1300  CTGCTCCATGAAGCTTTCCCCTCCCTGCAAGTCACGCCTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTG  1373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  CTGCTCCATGAAGCTTTCCCCTCCCTGCAAGTCACGCCTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTG  1252

Query 1374  GTGAAGACAGGAGCCCGCCCACAGCACTC  1402
            |||||||||||||||||||||||||||||
Sbjct 1253  GTGAAGACAGGAGCCCGCCCACAGCACTC  1281

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