Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15256
Subject:
NM_001004301.4
Aligned Length:
1887
Identities:
886
Gaps:
828

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTCCAAATGCATGATGAAGGAGTTCTCATCAACAGCACAAGGCAATAGAGAAGTGATCCACACAGGGACATTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAAAGACATGAAAGTCATCACACTGGAGACTTTCGCTTTCAGGAAATTGATAAAGATATTCATAACTTAGAGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCAGTGGCAAGAAGATGAAAGAAATAGCCATGAAGCACCCATGACAGAAATCAAAAAGTTGACTGGTAGTGCAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTCATTCGCATCTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCTGAACTCCACATGTTTCAGACCCAAGGGAAAATTGGTAATCAAGTGGAGAAGTCTATCAACGATGCTTCCTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AATTTCAACATCCCAAAGAATTTCTTGTAGGCCCAAAACCCATATTTCTAATAACTATGGGAATAATTTCCGGA  592

Query    1  -----------------------------------ATGAGAGAAAAATCTTTCCAATGTAATGAGACTGGCAAA  39
                                               |||||||||||.|||||||||||||||||||.|||||||
Sbjct  593  ATTCTTCGTTACTCACACAAAAACAGGAGGTACACATGAGAGAAAAGTCTTTCCAATGTAATGAGAGTGGCAAA  666

Query   40  GCCTTTAATTGTAGCTCATTTGTAAGGAAACATCAGATAATCCATTTAGGAGAAAAACAATATAAATTTGATAT  113
            ||||||||||.|||||||.|..|||||||||||||.|||||||||||||||||.|||||||||||||.||||.|
Sbjct  667  GCCTTTAATTATAGCTCACTCTTAAGGAAACATCAAATAATCCATTTAGGAGAGAAACAATATAAATGTGATGT  740

Query  114  ATGTGGCAAAGTCTTTAATGAGAAGCGATACCTTGCACGCCATCGTAGATGTCACACTAGTGAGAAACCTTACA  187
            |||||||||.|||||||||..|||||||.||||.|...||||||||||||||||||||.|.|||||||||||||
Sbjct  741  ATGTGGCAAGGTCTTTAATCGGAAGCGAAACCTAGTGTGCCATCGTAGATGTCACACTGGGGAGAAACCTTACA  814

Query  188  AGTGTAATGAATGTGGAAAGTCCTTCAGTTACAAGTCATCCCTGACATGCCATCGTAGATGTCACACTGGTGAG  261
            .|||||||||.|||||.|||.|.||||||.|.|.||..|||||.|||||||||||||||..|||.|||||.|||
Sbjct  815  GGTGTAATGAGTGTGGCAAGACTTTCAGTCAGACGTATTCCCTTACATGCCATCGTAGACTTCATACTGGAGAG  888

Query  262  AAACCTTACAAGTGTAATGAATGTG-GAAAGTCCTTCAGTTACAAGTCATCCCTTACATGCCATCATAGGTG--  332
            |||||||||||.|||.|.||||||| .|||| |.|||||||.|||.|||..|||||.|.|   .||||||.|  
Sbjct  889  AAACCTTACAAATGTGAAGAATGTGACAAAG-CTTTCAGTTTCAAATCAAACCTTAAAAG---ACATAGGAGAA  958

Query  333  -TCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGAAAGTCCTTCAGTTACAAGTCATCCCTTAGATGC  405
             |||..||||.||.|||||.||||||||||||||||||||.|||.||||.|||.|.|.|||||||||||.||||
Sbjct  959  TTCATGCTGGAGAAAAACCATACAAGTGTAATGAATGTGGCAAGACCTTTAGTCAGACGTCATCCCTTACATGC  1032

Query  406  CATCGTAGACTTCATACTGGAATAAAACCTTACAAGTGTAATGAGTGTGGCAAGATGTTTGGTCAAAATTCAAC  479
            |||||||||||||||||||||...|||||||.|||||||||||||||||||||||..|||.|||..||.|||.|
Sbjct 1033  CATCGTAGACTTCATACTGGAGAGAAACCTTTCAAGTGTAATGAGTGTGGCAAGACCTTTAGTCGGAAGTCATC  1106

Query  480  CCTTGTA-AT----TCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGCTTT  548
            |||  || ||    |||||   .|.|||||||.||||||||||||||.|||||||||||||||||||||.|.||
Sbjct 1107  CCT--TACATGCCATCATA---GACTTCATACGGGAGAGAAACCTTATAAGTGTAATGAATGTGGCAAGACCTT  1175

Query  549  TAATCAACAATCACACCTTTCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGACTGTG  622
            .|.|||..|.|.|..||||..|.|.||||.||||||||||||.||||||||.|||||||||||||||||.||||
Sbjct 1176  CAGTCAGGAGTTAACCCTTAAATGCCATCGTAGACTTCATACCGGAGAGAAGCCTTACAAGTGTAATGAATGTG  1249

Query  623  GTAAGGCTTTTATTCATCAGTCAAGCCTTGCATGTCATCATTGNCTTCATACTGGAGAGAAATCTTACAAATGT  696
            |.||||.|||||.|.|..||.|||.|||||||.||||||||.|.|||||||.||||||||||.|.|||||.|||
Sbjct 1250  GCAAGGTTTTTAATAAAAAGGCAAACCTTGCACGTCATCATAGACTTCATAGTGGAGAGAAACCCTACAAGTGT  1323

Query  697  GAAGAATGTGACAGGGTTTTCAGTCAGAAA-TCAAACCTTGAGAGACACAAGATAATTCATACTGGAGAGAAAC  769
            ...||.||||.||.|...||||||| |||| |||..|||||..|..||.|||...|||||||.|||||||||||
Sbjct 1324  ACTGAGTGTGTCAAGACGTTCAGTC-GAAATTCAGCCCTTGTAATTCATAAGGCTATTCATATTGGAGAGAAAC  1396

Query  770  CTTACAAGTGTAATGAGTGTCACAAGACCTTCAGTC-----------------------ACAGG----TCAT-C  815
            .|||||||||||||||||||..||||||.|||||||                       || ||    |||| |
Sbjct 1397  GTTACAAGTGTAATGAGTGTGGCAAGACGTTCAGTCGAATTTCAGCCCTCGTAATTCATAC-GGCAATTCATAC  1469

Query  816  T---------------------------------------------------------CTTCCATGCCATCGTA  832
            |                                                         |||.||||.||||.||
Sbjct 1470  TGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGGTTTTAATCGGAAAACACACCTTGCATGTCATCATA  1543

Query  833  GACTTCATAGTGGTGAGAAACCTTACAAGTGTAATGAATGTGGGAAGACTTTTAATGTACAGTCACACCTTTCA  906
            |||||||||.|||.|||||||||||||||||||||||||||||.|||..|||||||..|.|..||||||||.||
Sbjct 1544  GACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAAACACACCTTGCA  1617

Query  907  CGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTAAGGTTTGTGACAAGGCTTTCATGTGCCATTC  980
            |.||||||||||||||||||||||||.|||||||||||.|||||.|..||||.|||||.|||            
Sbjct 1618  CATCATCATAGACTTCATACTGGAGATAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTT------------  1679

Query  981  TTATC---TGGCAAACCATAC---------TAGAATTCATAGCGGAGAGAAACCTTACAAGTGTAATGAGTGTG  1042
            |.|||   ..|||.|||.|.|         ||||.||||||..||||||||||||||||||||||||||.||||
Sbjct 1680  TAATCAAAAAGCACACCTTGCACGTCACCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTG  1753

Query 1043  GTAAGGCTCACAATCACTTGTTTTATTCATCAGTCAAGCCTTGCATGTCATCA---------------------  1095
            |.||||             .|||||.|||..|..|||.|||||||.|||||||                     
Sbjct 1754  GCAAGG-------------TTTTTAATCAAAAAGCAAACCTTGCACGTCATCATAGACTTCATACTGGAGAGAA  1814

Query 1096  -------------------------------------  1095
                                                 
Sbjct 1815  ACCTTACAAGTTTAATGAGTGTGGCAAAGCTTTTAAT  1851

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