Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15256
Subject:
NM_001289952.1
Aligned Length:
2260
Identities:
918
Gaps:
1187

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCTTTTTCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTCCAAATGCACGATGAAGGAGTTCTTGTCAACAGCGCAAGGCAACAGAGAAGTGTTCCATGCAGGGACATTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAAATACATGAAAGTCATCACAATGGAGATTTTTGCTACCAGGATGTTGATAAAGATATTCATGACTATGAATT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCAATGGCAAGAAGATGAAAGAAATGGCCATGAAGCACCCATGACAAAAATCAAAAAGTTGACAGGTATTACAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AACGATATGATCAAAGTCATGCTAGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTCATTCGCATCTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCTGAAATGCACATATTTCAGACCGAAGAGAAAATTGATAATCAAGTTGTGAAGTCTGTCCACGATGCTTCCTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGTTTCAACAGCCCAAAGAATTTCTTGTAGGCCCAAAACCCATATATCTAATAACCATGGGAATAATTTCTGGA  592

Query    1  -----------------------------------ATGAGAGAAAAATCTTTCCAATGTAATGAGACTGGCAAA  39
                                               |||||||||||||||||||||||||||||||.|||||||
Sbjct  593  ATTCTTCATTACTCACACAAAAACAGGAAGTACACATGAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAA  666

Query   40  GCCTTTAATTGTAGCTCATTTGTAAGGAAACATCAGATAATCCATTTAGGAGAAAAACAATATAAATTTGATAT  113
            ||||||||||..||||||.|..|||||||||||||||||||||||||||.|||.|   |||||||||.||||.|
Sbjct  667  GCCTTTAATTACAGCTCACTCTTAAGGAAACATCAGATAATCCATTTAGCAGACA---AATATAAATGTGATGT  737

Query  114  ATGTGGCAAAGTCTTTAATGAGAAGCGATACCTTGCACGCCATCGTAGATGTCACACTAGTGAGAAACCTTACA  187
            |||||||||..||||||||.||||||||.||||.|||.||||||||||||||||||||.|||||||.|||||||
Sbjct  738  ATGTGGCAAGCTCTTTAATCAGAAGCGAAACCTAGCATGCCATCGTAGATGTCACACTGGTGAGAATCCTTACA  811

Query  188  AGTGTAATGAATGTGGAAAGTCCTTCAGTTACAAGTCATCCCTGACATGCCATCGTAGA--------TG-----  248
            ||||||||||.|||||.|||.||||||||.|.|.|||||||||.|||||||||||||||        ||     
Sbjct  812  AGTGTAATGAGTGTGGCAAGACCTTCAGTCAGACGTCATCCCTTACATGCCATCGTAGACTTCATACTGGAGAG  885

Query  249  --------------------------------------------------------------------------  248
                                                                                      
Sbjct  886  AAACCTTACAAATGTGAAGAATGTGACAAAGCTTTCCATTTCAAATCAATACTTGAAAGACATAGGATAATTCA  959

Query  249  --------------------------------------------------------------------------  248
                                                                                      
Sbjct  960  TACTGAAGAGAAACCATATAAGTGTAATGAGTGTGGCAAGACCTTTAGGCAGAAGTCAATCCTTACACGCCATC  1033

Query  249  -------TCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGAAAGTCCTTCAGTTACAAGTCATCCCTT  315
                   |||.|||||.|||||||||||||||||||||||.|||||.|||.||||.|||.||||||||||||||
Sbjct 1034  ATCGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTAGTCACAAGTCATCCCTT  1107

Query  316  ACATGCCATCATAGGTGTCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGAAAGTCCTTCAGTTACAA  389
            ||||||||||||||...|||.|||||.||||||||.|||||.||||||||.|||||.|||.||||.|||.||||
Sbjct 1108  ACATGCCATCATAGACTTCATACTGGAGAGAAACCCTACAAATGTAATGAGTGTGGCAAGACCTTTAGTCACAA  1181

Query  390  GTCATCCCTTAGATGCCATCGTAGACTTCATACTGGAATAAAAC------------------------------  433
            |||||||||||.|||||||||||||||||||||||||...||||                              
Sbjct 1182  GTCATCCCTTACATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGCTT  1255

Query  434  ------------------------------------------------------CTTACAAGTGTAATGAGTGT  453
                                                                  ||||||||||||||||||||
Sbjct 1256  ACAGTTTCAGATCAAATTTTGAAATACATCGGAAAATTCATACTGAAGACAATGCTTACAAGTGTAATGAGTGT  1329

Query  454  GGCAAGATGTTT----GGTCA------------------------------------------------AAAT-  474
            ||.||||..|||    ||.||                                                |||| 
Sbjct 1330  GGAAAGACCTTTAGCCGGACATCATCCCTTACATGCCATCGTAGACGTCATACTGGAGAGCAACCTTACAAATG  1403

Query  475  -------------------------------TCAACCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAAC  517
                                           ||||.|||||.||..||||.|..||||||||||||||||||||
Sbjct 1404  TGAAGAATGTGACAAAGCTTTCCGTTTCAAATCAAACCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAAC  1477

Query  518  CTTACAAGTGTAATGAATGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGTCATCATAGACTTCATACT  591
            |.||||||||||||||.|||||||||.|.||||.||...|.|||.||||..||.|.||||||||||||||||||
Sbjct 1478  CATACAAGTGTAATGAGTGTGGCAAGACCTTTAGTCGGAAGTCATACCTCACATGCCATCATAGACTTCATACT  1551

Query  592  GGAGAGAAACCTTACAAGTGTAATGACTGTGGTAAGGCTTTTA-------------------------------  634
            |||||||||.||||||||||||||||.||.||.|||.|.||||                               
Sbjct 1552  GGAGAGAAAGCTTACAAGTGTAATGAGTGCGGCAAGACCTTTAGTTGGAAGTCATCCCTTACCTGCCATCGTAG  1625

Query  635  --TTCAT---------------------------------------------------CAGTCAAGCCTTGCAT  655
              |||||                                                   ||||.||.||||..|.
Sbjct 1626  ACTTCATTCTGGAGAGAAACCTTACAAGTGTAAGGAGTGTGGCAAGACCTTCAATCAGCAGTTAACCCTTAAAC  1699

Query  656  GTCATCATTGNCTTCATACTGGAGAGAAATCTTACAAATGTGAAGAATGTGACAGGGTTTTCAGTCAGAAATCA  729
            |.||||.|.|.|||||||.|||||||||..||||||||||||||||..||||||..|.||.||||...||||||
Sbjct 1700  GCCATCGTAGACTTCATAGTGGAGAGAACCCTTACAAATGTGAAGATAGTGACAAAGCTTACAGTTTCAAATCA  1773

Query  730  AACCTTGAGAGACACAAGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTCACAAGACCTTCAG  803
            ||||||||.|.|||..|||.|||||||||||.||||||.|||||||||||||||||||||..||||||||||||
Sbjct 1774  AACCTTGAAATACATCAGAAAATTCATACTGAAGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAG  1847

Query  804  TCACAGGTCATCTCTTCCATGCCATCGTAGAC------------------------------------------  835
            ||..|.||||||.|||.|||||||||||||||                                          
Sbjct 1848  TCGGACGTCATCCCTTACATGCCATCGTAGACTTCATACCGGAGAGAAACCTTACAAATGTGAAGAATGTGACA  1921

Query  836  ------------------------------------------TTCATAGTGGTGAGAAACCTTACAAGTGTAAT  867
                                                      ||||||.|||.|||||||||||||||||||||
Sbjct 1922  AAGCTTTCCGTGTGAAATCAAACCTTGAAGGACATAGGAGAATTCATACTGGAGAGAAACCTTACAAGTGTAAT  1995

Query  868  GAATGTGGGAAGACTTTTAAT-GTACAGTCACACCTTTCACGTCATCATAGACTTCATACTGGAGAGAAACCTT  940
            ||.|||||.|||||.||||.| |.| |||||.|..||..|.|.|||||||||||||||||||||||||||||||
Sbjct 1996  GAGTGTGGCAAGACCTTTAGTCGGA-AGTCATATTTTATATGCCATCATAGACTTCATACTGGAGAGAAACCTT  2068

Query  941  ACAAATGTAAGGTTTGTGACAAG-GCTT---TCATGTGCCAT-TCTTATCTGGCAAACCATACTAGAATTCATA  1009
            |.||.|||||.|..||||.|||| .|||   |||...|.||| .|||||.||.|  ||||   ||||.||||||
Sbjct 2069  ATAAGTGTAATGAGTGTGGCAAGAACTTTAGTCAGAAGTCATCCCTTATATGCC--ACCA---TAGACTTCATA  2137

Query 1010  GCGGAGAGAAACCTTACAAGTGTAATGAGTGTGGTAAGGCTCACAATCACTTGTTTTATTCATCAGTCAAGCCT  1083
            ..||||||||||||||||||||||||||||||||.|||.|             .||||.|||..||||||.|||
Sbjct 2138  CTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGAC-------------CTTTAGTCAGAAGTCAAACCT  2198

Query 1084  TGCATGTCATCA----------------------------  1095
            |.||||.||||.                            
Sbjct 2199  TACATGCCATCGTAGACTTCATACTGGAGAAAAACAAGTG  2238

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