Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15256
Subject:
XR_001753716.2
Aligned Length:
3816
Identities:
906
Gaps:
2752

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGACCAGGAAGCGGATCCCGTGGAGTGAAGGTCGCACCGCGGCGGATTGACTTCTAAAGACTTGGTACGTGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGGGTCTACTGACATTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAAGCACTCATGACAAAAACCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGT  740

Query    1  ----ATGAGAGAAAAATCTTTCCAATGTAATGAGACTGGCAAAGCCTTTAATTGTAGCTCATTTGTAAGGAAAC  70
                |..||||||||||||||||||.|||||||||.||||||||||||||||.||||||||.|..|||..||||
Sbjct  741  ACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAAC  814

Query   71  ATCAGATAATCCATTTAGGAGAAAAACAATATAAATTTGATATATGTGGCAAAGTCTTTAATGAGAAGCGATAC  144
            ||||||||||||||||||||||.|||||.|||||||.||||.||||.|||||.|.||||.||.|||||||||||
Sbjct  815  ATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATAC  888

Query  145  CTTGCACGCCATCGTAGATGTCACACTAGTGAGAAACCTTACAAGTGTAATGAATGTGGAAAGTCCTTCAGTTA  218
            ||||||.||||   |||||||||||||.|||||||.|||||||.|||||||||.|||||.|||.|.||||||.|
Sbjct  889  CTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTACACGTGTAATGAGTGTGGCAAGACATTCAGTCA  959

Query  219  CAAGTCATCCCTG-------ACATGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAATGT  285
            |||.|||.|||||       |||.|.||      || |||.|||||.|||||||||||||||||||||||||||
Sbjct  960  CAATTCAGCCCTGTTAGTTCACAAGGCA------AT-TCATACTGGAGAGAAACCTTACAAGTGTAATGAATGT  1026

Query  286  GGAAAGTCCTTCAGTT--------ACAAGTCATCCCTTACATGCCATCATAG-GTGTCACACTGGTGAGAAACC  350
            ||.|||       |||        |||| |||..||||.||.|.|||||||| || |||.|||||.||||||||
Sbjct 1027  GGCAAG-------GTTTTTAATCAACAA-TCAAACCTTGCACGTCATCATAGAGT-TCATACTGGAGAGAAACC  1091

Query  351  TTACAAGTGTAATGAATGTG-GAAAGTCCTTCAGTTACAAGTCATCCCTTAGATGCCATCGTAGACTTCATACT  423
            ||||||.|||.|.||||||| .||||| .||||||..|||.|||..||||..|.|.|||.|.|||.||||.|||
Sbjct 1092  TTACAAATGTGAAGAATGTGACAAAGT-TTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACT  1164

Query  424  GGA--------ATA------------------------------------------------------------  429
            |||        |||                                                            
Sbjct 1165  GGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGT  1238

Query  430  ----------------AAACCTTACAAGTGTAATGAGTGTGGCAAGATGTTTGGTCAAAATTCAACCCTTGTAA  487
                            |||||||||||||||||||||||||||||||..||||.||||||||||.|.|||||||
Sbjct 1239  AATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTGTTCAAAATTCATCTCTTGTAA  1312

Query  488  TTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGCTTTTAATCAACAATCA  561
            |.|||||||..|||||||||||||||||||.||||||||||||||||||||||||||.|||||||||..|||||
Sbjct 1313  TGCATAAGGTCATTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCA  1386

Query  562  CACCTTTCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGACTGTGGTAAGGCTTTTA-  634
            .|||||.||.||||||.|||||||||||||||||||||||||||||||||||||||.|||||.||||.||||| 
Sbjct 1387  AACCTTGCATGTCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAA  1460

Query  635  --------------------------------TTCAT-------------------------------------  639
                                            |||||                                     
Sbjct 1461  TCGAAAATCAAACCTTGAACGTCATCATAGACTTCATACTGGAAAGAAATCTTAGAAGTGTAAATTTGCAAGGT  1534

Query  640  ----------CAGTCAAGCCTTGCATGTCATCATTGNCTTCATACTGGAGAGAAATCTTACAAATGTGAAGAAT  703
                      |||||||.||||||||||||||||.|.|||.||||||||||||||.||||||||||||||||||
Sbjct 1535  TTTTAGGCAACAGTCAAACCTTGCATGTCATCATAGACTTTATACTGGAGAGAAACCTTACAAATGTGAAGAAT  1608

Query  704  GTGAC-AGGGTTTTCAGTCAGAAATCAAACCTTGAGAGACACAAGATAATTCATACTGGAGAGAAACCTTACAA  776
            ||||| |..|||||||.|...||||||..||||||.|.|||.|.||.|.|||||||||||||||||||.|||||
Sbjct 1609  GTGACAAAAGTTTTCAATTTCAAATCACTCCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATACAA  1682

Query  777  GTGTAATGAGTGTCACAAG-------------------ACC------------------TTCA-----------  802
            .|||||.|..|||.|||||                   |||                  ||||           
Sbjct 1683  ATGTAAGGTTTGTGACAAGGATTTCGGGTGTGATTCACACCTGGCCCAACATACTGGAATTCACACTGGAAAGG  1756

Query  803  ---------------------GTCACAG---------------GTCATCTCTT-----CCAT-------GCCAT  828
                                 ||..|||               ||||.|.|||     ||||       .||||
Sbjct 1757  AACTGTACAAGTGTAATGAGTGTGGCAGAGCCTTTGGTGGTCAGTCAACACTTACTCACCATCAAGCAATCCAT  1830

Query  829  CGTA-----------GACT---------------TCATAGTGGTGAG-------------------AAAC----  853
            .|||           ||||               .||.|||..|.||                   ||||    
Sbjct 1831  GGTATAGGGAAACTTGACTAATGTAATGATTGTCACAAAGTCTTCAGTAATATTACAGCCATTGCAAAACATTG  1904

Query  854  ----------------------CTTACAAGTGTAATGAATGTGGGAAGACTTTTA---ATGTACAGTCACACCT  902
                                  ||||||||||||||.|||||||.|||..|||.|   ||   ||.|||.|.||
Sbjct 1905  GAGAATCCATAATGAAGGAGGTCTTACAAGTGTAATAAATGTGGCAAGTTTTTCAGACAT---CATTCATAACT  1975

Query  903  TTCACGTCATCATAGA-CTTCATACTGGAGAGAAACCTTACAAATGTAAGGTTTGTGACAAGGCTTTCATGTGC  975
            |.||..||||....|| ||| ||||.|||||||||.|||||||||||.|.|.|||||.|||||..||||   |.
Sbjct 1976  TGCAGTTCATTGGCGATCTT-ATACAGGAGAGAAATCTTACAAATGTGATGATTGTGGCAAGGTCTTCA---GT  2045

Query  976  CA---TTCTTATCTGGCAAACCATAC--TAGAATTCATAGCGGAGAGAAACCTTACAAGTGTAATGAGTGTG-G  1043
            ||   |||.|.|.|.|||||    ||  .||||||||||..||||||||||||.||||||||.||||.|||| |
Sbjct 2046  CAAGCTTCATCTTTTGCAAA----ACGGGAGAATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGAG  2115

Query 1044  TAAGGC-------------TCACA-----------ATCA-----------------------CTT------GTT  1064
            .||.||             |||||           ||||                       |||      ||.
Sbjct 2116  CAAAGCCTTTACTTCACGTTCACACCACATTAGATATCAGAGGATCCATACTGGACAGAAATCTTACAAACGTC  2189

Query 1065  TTAT-----------TCATCAGTC-------AAGCCTTGC---ATGTCATCA----------------------  1095
            .|||           ||.||||||       |..||||||   ||.||||.|                      
Sbjct 2190  CTATGTGTGGCAAGGTCTTCAGTCCGAGGTTACTCCTTGCAGAATATCATAACGTTCATTTTTGAGGTAATAGT  2263

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2264  TACAAATGCGGTGAGCACAGCAAACCATCAAGGATTGACAGTAGAGTCAATTCAGAATTGACTTGAGTTTGAGT  2337

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2338  TGACTTAAAACATTCAGTTGAAGCATTAATTGACATTAAAGTGTTTATGTTAAGAGGATTGGGCCAGGCGTGTG  2411

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2412  GCTCACGCCTGTAAATCCAGCACTTTAGGAGCCCAAGGTGGATAGATCACTTGAGGTCATGAGTTTGAGATCAG  2485

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2486  CCTGGCCAACAGACGATTGATTTCCAAAGACTCATGCTATGTAAGGAAGCCACCAAGAAGGGCAAAGAAAAGGA  2559

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2560  GCCAGGGACGGCTCTTCCTCAGGGACACTAGACTTTCAGGGATGTGGCTATAGATTTCTCTTTGGAGGAGTGGA  2633

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2634  AATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTG  2707

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2708  GGCTTGAGTGCAAGCCACGATCTCGCCTCACCACAACCTCCGTCTCCCGAGTTCAAGCGATTCTCCTGCCTCAG  2781

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2782  CTTCCCGAGTAGCTGGGATTACAGGTATGAACCACTATGCCCGGCTAACTTTGTTTTTTTTTTTTAGAAATTAA  2855

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2856  ACCTTTTTTCAGCTTAATGACCCAGGGGTGTATTTTTGAAGGACTTGGGAGCTCTCTTTGAAAGGCAAACAACA  2929

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 2930  AGGGAAACAGTACCTTTATCTCAGTAGGAAATTAAATAATTCAAACATCAAATAACTTCAATTTAAGGCTATGG  3003

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3004  ACTTTGAGATAATTCTGAGCCTTGAGAGGAATGTGGTCAGGCAACCTGAGTCCAGTGGAATGCAGGTGCAACTT  3077

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3078  CTAAGAGTTTTCCTGTAAGTAATTAAGAAGACTAAGTAGCCCCAGAGATAAGACCTCCTCGGATCATTGTCCCT  3151

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3152  TCTTATGTAGTGATAAAGTAACCTTCCTTGAAGTGTATCTATCCGTAATCAATCAAGTTGCTGCAGCCTATGCA  3225

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3226  CTGGCCCAGAATAAAAAACGTGGTGATTCTGCTAAAGCTTCTCTGTCTTTCCCTGTGTGTGAAATCTTAACGTC  3299

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3300  TCTACTTGGGAACGCTGATCCCATTCATTTAGAGTTGATGTTTCCACGTGGCTATTTCCAAGCTTTGCCTTCAA  3373

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3374  ATAAATTCTGTACTTAATCATATATTCTAAATTTTATTATTTACTGCTGACATCAGTTTCTGTCGGATTGTAGG  3447

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3448  AGCCTCACCAGAGAGGGCCCCTGTCGCCATGTTGTAAAACTCACACTTGCCAAAAGTTGTGGGTTAGGGTTTCT  3521

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3522  CCCCCTCCCTCAGGATGACGCTAGTTAGCTGACACAGATGGTCACCTCCATTACCAAGTAGAGTCAGGATGAAC  3595

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3596  TATGTGTGACTGTTCAACTATGTGTCCTCTTCCCTGAGGACTGATTAGTGTTTATCTTGAAAACATGTCCTTAA  3669

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 3670  TGGGTTGTATAGAACACTGAAGCATCTGATTTCAAACTCTTAGCTCTTTTCCTCTATTTCCCATCACATTCTGG  3743

Query 1096  ------------------------------------------  1095
                                                      
Sbjct 3744  TCTAAGGCTTATTTATTAATAAAATGATTTTTATTTCTTTAT  3785

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