Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15384
Subject:
NM_027454.4
Aligned Length:
1416
Identities:
1083
Gaps:
111

Alignment

Query    1  -----ATGCTCCCAGATTTTA-------TGTTGGTTCTCATCGTCCTTGGCA-TCCC-----TTCCT-------  49
                 |.|||.||      ||       |.||||.|||||      .||.|| ||.|     |||||       
Sbjct    1  ATGACAGGCTTCC------TACGGGTCTTCTTGGCTCTCA------GTGCCACTCTCTCAGGTTCCTGGGTGAC  62

Query   50  -----CAGCCACCACAGGTTTCAACTCAATCGCCGAAAATGAAGATGCCCTCCTCAGACATTTGTTCCAAGGTT  118
                 |||||||..|.||..|||.||||.|.||.|||.|||||||.||.|||||||||||||||||||||||||
Sbjct   63  TCTCACAGCCACTGCGGGACTCAGCTCAGTGGCTGAACATGAAGACGCACTCCTCAGACATTTGTTCCAAGGTT  136

Query  119  ATCAGAAATGGGTCCGCCCTGTATTACATTCTAATGACACCATAAAAGTATATTTTGGATTGAAAATATCCCAG  192
            ||||||||||.|||||||||||.||..||||.|.|||||.|||||||||.|||||||||||.||.|||||.|||
Sbjct  137  ATCAGAAATGTGTCCGCCCTGTGTTGAATTCCAGTGACATCATAAAAGTGTATTTTGGATTAAAGATATCTCAG  210

Query  193  CTTGTAGATGTGGATGAAAAGAATCAGCTGATGACAACCAATGTGTGGCTCAAACAGGAATGGACAGACCACAA  266
            |||||||||||                                             |||||||||||||||.||
Sbjct  211  CTTGTAGATGT---------------------------------------------GGAATGGACAGACCAAAA  239

Query  267  GTTACGCTGGAATCCTGATGATTATGGTGGGATCCATTCCATTAAAGTTCCATCAGAATCTCTGTGGCTTCCTG  340
            .|||||.||||||||.||.||.||||||||.||..||||.||.||.||||||||.||.||.||.|||||.||||
Sbjct  240  ATTACGATGGAATCCCGAAGACTATGGTGGAATTAATTCGATAAAGGTTCCATCGGAGTCGCTCTGGCTGCCTG  313

Query  341  ACATAGTTCTCTTTGAAAATGCTGACGGCCGCTTCGAAGGCTCCCTGATGACCAAGGTCATCGTGAAATCAAAC  414
            ||||||||||||||||||||||||||||.||.||.||.|||||.||.||||||||||.|||.||||||||.|.|
Sbjct  314  ACATAGTTCTCTTTGAAAATGCTGACGGACGTTTTGAGGGCTCTCTCATGACCAAGGCCATTGTGAAATCCAGC  387

Query  415  GGAACTGT-TGTCTGGACCCCTCCCGCCAGCTACAAAAGCTCCTGCACCATGGACGTCACGTTTTTCCCGTTCG  487
            |||||.|| .|| |||||.||||||||||||||||||||.|||||.||||||||.|||||.|||||||||||||
Sbjct  388  GGAACCGTCAGT-TGGACTCCTCCCGCCAGCTACAAAAGTTCCTGTACCATGGATGTCACATTTTTCCCGTTCG  460

Query  488  ACCGACAGAACTGCTCCATGAAGTTTGGATCCTGGACTTATGATGGCACCATGGTTGACCTCATTTTGATCAAT  561
            |....|||||||||||.||||||||.||||||||||||||.|||||.||||||||.|||||||||.||||||||
Sbjct  461  ATAAGCAGAACTGCTCAATGAAGTTCGGATCCTGGACTTACGATGGTACCATGGTCGACCTCATTCTGATCAAT  534

Query  562  GAAAATGTCGACAGAAAAGACTTCTTCGATAACGGAGAATGGGAAATACTGAATGCAAAGGGGATGAAGGGGAA  635
            |||||.||.|||.|.||||||||.||.|||||||||||.|||||.|||||.||||||||||||||||||||.||
Sbjct  535  GAAAACGTTGACCGGAAAGACTTTTTTGATAACGGAGAGTGGGAGATACTAAATGCAAAGGGGATGAAGGGCAA  608

Query  636  CAGAAGGGACGGCGTGTACTCCTATCCCTTTATCACGTATTCCTTCGTCCTGAGACGCCTGCCTTTATTCTATA  709
            ||||||.||.|||.|.|||||||||||.|||.|.||.||.||.||.||.||||||||||||||..|.||.||.|
Sbjct  609  CAGAAGAGAAGGCTTTTACTCCTATCCGTTTGTTACCTACTCTTTTGTTCTGAGACGCCTGCCCCTGTTTTACA  682

Query  710  CCCTCTTTCTCATCATCCCCTGCCTGGGGCTGTCTTTCCTAACAGTTCTTGTGTTCTATTTACCTTCGGATGAA  783
            ||||||||.|.||.|||||||||||||||||||||||.||.||.||.||.||||||||..||||.||.||.|||
Sbjct  683  CCCTCTTTTTGATAATCCCCTGCCTGGGGCTGTCTTTTCTCACGGTCCTGGTGTTCTACCTACCCTCCGACGAA  756

Query  784  GGAGAAAAACTTTCATTATCCACATCGGTCTTGGTTTCTCTGACAGTTTTCCTTTTAGTGATTGAAGAAATCAT  857
            ||.||||||||.||.||||||||.|||||.|||||||||.|||||||.||.||||||||.||.||||||||.||
Sbjct  757  GGGGAAAAACTCTCCTTATCCACCTCGGTTTTGGTTTCTTTGACAGTGTTTCTTTTAGTAATCGAAGAAATAAT  830

Query  858  CCCATCGTCTTCCAAAGTCATTCCTCTCATTGGAGAGTACCTGCTGTTCATCATGATTTTTGTGACCCTGTCCA  931
            |||.||.|||||.||||||||.|||||||||||.||||||||.||.|||||.|||||.|||||.||.|||||.|
Sbjct  831  CCCGTCTTCTTCAAAAGTCATCCCTCTCATTGGGGAGTACCTCCTCTTCATTATGATATTTGTCACGCTGTCTA  904

Query  932  TCATTGTTACCGTGTTTGTCATTAACGTTCACCACAGATCTTCTTCCACGTACCACCCCATGGCCCCCTGGGTT  1005
            |.|||||.||.||.|||||.|||||.||.||||||||||||||.||.||||||||.|||||||||||||||||.
Sbjct  905  TTATTGTCACGGTTTTTGTAATTAATGTCCACCACAGATCTTCCTCAACGTACCATCCCATGGCCCCCTGGGTG  978

Query 1006  AAGAGGCTCTTTCTGCAGAAACTTCCAAAATTACTTTGCATGAAAGATCATGTGGATCGCTACTCATCCCCAGA  1079
            ||||||||.||||||.|.|||||.||.|.||..|||||||||||.||.|....|||.||||.|||.|.|||.||
Sbjct  979  AAGAGGCTGTTTCTGGAAAAACTCCCGAGATGGCTTTGCATGAAGGACCCCAGGGACCGCTTCTCTTTCCCCGA  1052

Query 1080  --GAAAGAGGAGAGT----CAACCAGTAGTGAAAGGCAAAGTCCTCGAAAAAAAGAAACAGAAACAGCT-----  1142
              |||  .|||||||    .||||    ||||..||.|||.|.|..|..||||||||.||||     ||     
Sbjct 1053  TGGAA--CGGAGAGTAAGGGAACC----GTGAGGGGGAAATTTCCAGGGAAAAAGAAGCAGA-----CTCCTAC  1115

Query 1143  TAGTGATGGAGAAAAAGTTCTAGTTGCTTTTTTGGAAAAAGCTGCTGATTCCATTAGATACATTTCCAGACATG  1216
            .|||||||||||||.||||||.||.|||||..||||.||.||..||||.|||||.||||||||.||.||.||||
Sbjct 1116  CAGTGATGGAGAAAGAGTTCTGGTCGCTTTCCTGGAGAAGGCCTCTGAGTCCATCAGATACATCTCGAGGCATG  1189

Query 1217  TGAAGAAAGAACATTTTATCAGCCAGGTAGTACAAGACTGGAAATTTGTAGCTCAAGTTCTTGACCGAATCTTC  1290
            |||||||.|||||.||.|||||.|||||.||.||||||||||||||.||.|||||.|||||||||||.||||||
Sbjct 1190  TGAAGAAGGAACACTTCATCAGTCAGGTTGTTCAAGACTGGAAATTCGTGGCTCAGGTTCTTGACCGCATCTTC  1263

Query 1291  CTGTGGCTCTTTCTGATAGTGTCAGTAACAGGCTCGGTTCTGATTTTTACCCCTGCTTTGAAGATGTGGCTACA  1364
            ||.|||||||||||||.||..||.||....|||||.||.||||||||||..||.||.||||||||||||.||||
Sbjct 1264  CTCTGGCTCTTTCTGACAGCTTCGGTTTTGGGCTCTGTCCTGATTTTTATTCCAGCCTTGAAGATGTGGATACA  1337

Query 1365  TAGTTACCAT  1374
            |.|||.||||
Sbjct 1338  TCGTTTCCAT  1347

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