Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15384
Subject:
NM_173212.4
Aligned Length:
1416
Identities:
1124
Gaps:
66

Alignment

Query    1  -----ATGCTCCCAGATTTTA-------TGTTGGTTCTCATCGTCCTTGGCA-TCCC-----TTCCT-------  49
                 |.|||.||      ||       |.||||.|||||      .||.|| ||.|     |||||       
Sbjct    1  ATGACAGGCTTCC------TACGGGTCTTCTTGGCTCTCA------GTGCCACTCTCTCAGGTTCCTGGGTGAC  62

Query   50  -----CAGCCACCACAGGTTTCAACTCAATCGCCGAAAATGAAGATGCCCTCCTCAGACATTTGTTCCAAGGTT  118
                 |||||||..|.||..|||.||||.|.||.|||.|||||||.||.|||||||||||||||||||||||||
Sbjct   63  TCTCACAGCCACTGCGGGACTCAGCTCAGTGGCTGAACATGAAGACGCACTCCTCAGACATTTGTTCCAAGGTT  136

Query  119  ATCAGAAATGGGTCCGCCCTGTATTACATTCTAATGACACCATAAAAGTATATTTTGGATTGAAAATATCCCAG  192
            ||||||||||.|||||||||||.||..||||.|.|||||.|||||||||.|||||||||||.||.|||||.|||
Sbjct  137  ATCAGAAATGTGTCCGCCCTGTGTTGAATTCCAGTGACATCATAAAAGTGTATTTTGGATTAAAGATATCTCAG  210

Query  193  CTTGTAGATGTGGATGAAAAGAATCAGCTGATGACAACCAATGTGTGGCTCAAACAGGAATGGACAGACCACAA  266
            ||||||||||||||||||||||||||||||||||||||.||.||||||||.||.|||||||||||||||||.||
Sbjct  211  CTTGTAGATGTGGATGAAAAGAATCAGCTGATGACAACAAACGTGTGGCTGAAGCAGGAATGGACAGACCAAAA  284

Query  267  GTTACGCTGGAATCCTGATGATTATGGTGGGATCCATTCCATTAAAGTTCCATCAGAATCTCTGTGGCTTCCTG  340
            .|||||.||||||||.||.||.||||||||.||..||||.||.||.||||||||.||.||.||.|||||.||||
Sbjct  285  ATTACGATGGAATCCCGAAGACTATGGTGGAATTAATTCGATAAAGGTTCCATCGGAGTCGCTCTGGCTGCCTG  358

Query  341  ACATAGTTCTCTTTGAAAATGCTGACGGCCGCTTCGAAGGCTCCCTGATGACCAAGGTCATCGTGAAATCAAAC  414
            ||||||||||||||||||||||||||||.||.||.||.|||||.||.||||||||||.|||.||||||||.|.|
Sbjct  359  ACATAGTTCTCTTTGAAAATGCTGACGGACGTTTTGAGGGCTCTCTCATGACCAAGGCCATTGTGAAATCCAGC  432

Query  415  GGAACTGT-TGTCTGGACCCCTCCCGCCAGCTACAAAAGCTCCTGCACCATGGACGTCACGTTTTTCCCGTTCG  487
            |||||.|| .|| |||||.||||||||||||||||||||.|||||.||||||||.|||||.|||||||||||||
Sbjct  433  GGAACCGTCAGT-TGGACTCCTCCCGCCAGCTACAAAAGTTCCTGTACCATGGATGTCACATTTTTCCCGTTCG  505

Query  488  ACCGACAGAACTGCTCCATGAAGTTTGGATCCTGGACTTATGATGGCACCATGGTTGACCTCATTTTGATCAAT  561
            |....|||||||||||.||||||||.||||||||||||||.|||||.||||||||.|||||||||.||||||||
Sbjct  506  ATAAGCAGAACTGCTCAATGAAGTTCGGATCCTGGACTTACGATGGTACCATGGTCGACCTCATTCTGATCAAT  579

Query  562  GAAAATGTCGACAGAAAAGACTTCTTCGATAACGGAGAATGGGAAATACTGAATGCAAAGGGGATGAAGGGGAA  635
            |||||.||.|||.|.||||||||.||.|||||||||||.|||||.|||||.||||||||||||||||||||.||
Sbjct  580  GAAAACGTTGACCGGAAAGACTTTTTTGATAACGGAGAGTGGGAGATACTAAATGCAAAGGGGATGAAGGGCAA  653

Query  636  CAGAAGGGACGGCGTGTACTCCTATCCCTTTATCACGTATTCCTTCGTCCTGAGACGCCTGCCTTTATTCTATA  709
            ||||||.||.|||.|.|||||||||||.|||.|.||.||.||.||.||.||||||||||||||..|.||.||.|
Sbjct  654  CAGAAGAGAAGGCTTTTACTCCTATCCGTTTGTTACCTACTCTTTTGTTCTGAGACGCCTGCCCCTGTTTTACA  727

Query  710  CCCTCTTTCTCATCATCCCCTGCCTGGGGCTGTCTTTCCTAACAGTTCTTGTGTTCTATTTACCTTCGGATGAA  783
            ||||||||.|.||.|||||||||||||||||||||||.||.||.||.||.||||||||..||||.||.||.|||
Sbjct  728  CCCTCTTTTTGATAATCCCCTGCCTGGGGCTGTCTTTTCTCACGGTCCTGGTGTTCTACCTACCCTCCGACGAA  801

Query  784  GGAGAAAAACTTTCATTATCCACATCGGTCTTGGTTTCTCTGACAGTTTTCCTTTTAGTGATTGAAGAAATCAT  857
            ||.||||||||.||.||||||||.|||||.|||||||||.|||||||.||.||||||||.||.||||||||.||
Sbjct  802  GGGGAAAAACTCTCCTTATCCACCTCGGTTTTGGTTTCTTTGACAGTGTTTCTTTTAGTAATCGAAGAAATAAT  875

Query  858  CCCATCGTCTTCCAAAGTCATTCCTCTCATTGGAGAGTACCTGCTGTTCATCATGATTTTTGTGACCCTGTCCA  931
            |||.||.|||||.||||||||.|||||||||||.||||||||.||.|||||.|||||.|||||.||.|||||.|
Sbjct  876  CCCGTCTTCTTCAAAAGTCATCCCTCTCATTGGGGAGTACCTCCTCTTCATTATGATATTTGTCACGCTGTCTA  949

Query  932  TCATTGTTACCGTGTTTGTCATTAACGTTCACCACAGATCTTCTTCCACGTACCACCCCATGGCCCCCTGGGTT  1005
            |.|||||.||.||.|||||.|||||.||.||||||||||||||.||.||||||||.|||||||||||||||||.
Sbjct  950  TTATTGTCACGGTTTTTGTAATTAATGTCCACCACAGATCTTCCTCAACGTACCATCCCATGGCCCCCTGGGTG  1023

Query 1006  AAGAGGCTCTTTCTGCAGAAACTTCCAAAATTACTTTGCATGAAAGATCATGTGGATCGCTACTCATCCCCAGA  1079
            ||||||||.||||||.|.|||||.||.|.||..|||||||||||.||.|....|||.||||.|||.|.|||.||
Sbjct 1024  AAGAGGCTGTTTCTGGAAAAACTCCCGAGATGGCTTTGCATGAAGGACCCCAGGGACCGCTTCTCTTTCCCCGA  1097

Query 1080  --GAAAGAGGAGAGT----CAACCAGTAGTGAAAGGCAAAGTCCTCGAAAAAAAGAAACAGAAACAGCT-----  1142
              |||  .|||||||    .||||    ||||..||.|||.|.|..|..||||||||.||||     ||     
Sbjct 1098  TGGAA--CGGAGAGTAAGGGAACC----GTGAGGGGGAAATTTCCAGGGAAAAAGAAGCAGA-----CTCCTAC  1160

Query 1143  TAGTGATGGAGAAAAAGTTCTAGTTGCTTTTTTGGAAAAAGCTGCTGATTCCATTAGATACATTTCCAGACATG  1216
            .|||||||||||||.||||||.||.|||||..||||.||.||..||||.|||||.||||||||.||.||.||||
Sbjct 1161  CAGTGATGGAGAAAGAGTTCTGGTCGCTTTCCTGGAGAAGGCCTCTGAGTCCATCAGATACATCTCGAGGCATG  1234

Query 1217  TGAAGAAAGAACATTTTATCAGCCAGGTAGTACAAGACTGGAAATTTGTAGCTCAAGTTCTTGACCGAATCTTC  1290
            |||||||.|||||.||.|||||.|||||.||.||||||||||||||.||.|||||.|||||||||||.||||||
Sbjct 1235  TGAAGAAGGAACACTTCATCAGTCAGGTTGTTCAAGACTGGAAATTCGTGGCTCAGGTTCTTGACCGCATCTTC  1308

Query 1291  CTGTGGCTCTTTCTGATAGTGTCAGTAACAGGCTCGGTTCTGATTTTTACCCCTGCTTTGAAGATGTGGCTACA  1364
            ||.|||||||||||||.||..||.||....|||||.||.||||||||||..||.||.||||||||||||.||||
Sbjct 1309  CTCTGGCTCTTTCTGACAGCTTCGGTTTTGGGCTCTGTCCTGATTTTTATTCCAGCCTTGAAGATGTGGATACA  1382

Query 1365  TAGTTACCAT  1374
            |.|||.||||
Sbjct 1383  TCGTTTCCAT  1392

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