Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15496
- Subject:
- XR_001740146.2
- Aligned Length:
- 5728
- Identities:
- 938
- Gaps:
- 4790
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTCTTTTCACTGCAGCTGAATGAGTTGTGGCGCCCACAATGCTCCCATGACAAGGAGCTGACAAGTTCCATTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCGTCGCGGGCATCTTGGAATCATGACTCCCACAATGCCTTGGGCACTTGGTCGACAGTGGGGCCGCCTCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAAAAAATGTGAGAGGTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACGACAGCACATCCACCCTCCACCTCTAGCCCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACACCCCCATTTCTACTTATAATCAAGAGAAAAGCTCTAAGTATCTGGCATTGCCCTAGGCTGCTTTAGTGTTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAGAAAAGTTTGCTGAAAAAGTAAGATATCTTCTGCCAGGAAATCAAGGAGGAAAAAAAAAATCATTTTCTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTGCTCTAAACTGCTGCATCTGTCTATGCCAAACTAATCAATACCGATTGCACCACCAAACTCCATTGCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTCAGCTGTGAGGAGATTCCCTTTCAGACAACTTTGCTGAAAGCAGCTTGGAAATTCGGTGTCGAAGGGTCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCACGTTTTCATGCTTGCATTTTGGGCTCCAAATTGGCACTGGGAAGGGGTTACTGAGAGCACAAGGCTGATAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGGCCCTACTTTTAAACGTTCATCTACTTACAATCCTAGTATTTCTCTAAAAACCAAAACCTCTTTGAATTAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGTTTCATGCTGTGAATTTCTAGTGGGAGATCTTTTCCTTGATATTGACGACACAATTTTCCATGTACTTTTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGCAGGGAGTGGGGAAAAGTATTTTGAGGGGACATTTTCATCATCAGTTCAGCTTTTTTTTTTTGGTTGTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCTTTTTTGGGGGGGTTGGGTTTGTTGGTTTCACTGAAACATTTAACTACCTGTAAAATCTAAACATGGCTGTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGAGGGGGACTTGCTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTTTGATTCATTGAAAGCCAGAGCCACGCATTTTATGGAAAATGTAACTAGAAGTAAGGTGCTGAACTGCTGC 1184
Query 1 ----------------------------------ATGGGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATC 40
|| |||||||||||||||||||||||||||||||||||||
Sbjct 1185 TACAGCACCTTACCTGAGGCACAAACTTTGTTGCAT-GGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATC 1257
Query 41 CACCCCCACATTTAAAAACGCAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATG 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CACCCCCACATTTAAAAACGCAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATG 1331
Query 115 TTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGT 1405
Query 189 TGCACCAAGCTTAGCCACCAATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGG 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TGCACCAAGCTTAGCCACCAATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGG 1479
Query 263 TCCCGGCAGAGATCTTGCCGACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCT 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TCCCGGCAGAGATCTTGCCGACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCT 1553
Query 337 GCAGCTGCTGCACAGAAATTAATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GCAGCTGCTGCACAGAAATTAATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAA 1627
Query 411 CCGAGGAGAAAATGATTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 CCGAGGAGAAAATGATTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCA 1701
Query 485 CTGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 CTGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTG 1775
Query 559 CAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGC 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 CAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGC 1849
Query 633 CATGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGGAATTCCTCAAGCTG 706
|| ||||||||||||||||||
Sbjct 1850 CA------------------------------------------------------TGGGAATTCCTCAAGCTG 1869
Query 707 TACTTCCCCCATTACCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 TACTTCCCCCATTACCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATT 1943
Query 781 TTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCAGGCTCAATATT 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 TTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCA----------- 2006
Query 855 GTGCATGACACCCGCTACAAGTGTTGTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAA 928
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 -------------------------GTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAA 2055
Query 929 CATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCA---------------------------- 974
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056 CATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAGCCCCATCCTTGATGCTTCTACACTGTT 2129
Query 975 ------------------------------------GATACCCATAATATCTGCCGAACATCTGACTAGCCACA 1012
||||||||||||||||||||||||||||||||||||||
Sbjct 2130 GGGTGCAACATCCTGTCCTGCAGCAGCAGGAAAAATGATACCCATAATATCTGCCGAACATCTGACTAGCCACA 2203
Query 1013 AGTATGTTACCCAGATG--------------------------------------------------------- 1029
|||||||||||||||||
Sbjct 2204 AGTATGTTACCCAGATGTAGAATTTTCATCACTAAACAATCATGCTAAAGAGGAAAGGACAGTGTGCTTGGTTA 2277
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2278 GAGTAAAGGACGAGGTCATTAGCCATATTGTATATATCGTCAAGCAACACACACAAAAGTTCCTCAGCCACAAG 2351
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2352 ACATCCACATATTGCATGTTAACCAGAAGAAAAGACAACATTTTCCGGAAATCCACTGCACACTGTTGCCTATA 2425
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2426 CACTTTGTACATTTAATTGATATTTGTGCTGAGGTGATATTCCTGTCTAAAAGAACAACATTGTCTTTCTTTTC 2499
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2500 TAGCACAGAGTTATGCATTCAAAGATGCATACCTAGTTAGTTTCCTATATATTCATGCCATCTTGAAAAGACAG 2573
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2574 ACTATGGTGTAACCATGATTCTATTATGTATTGGTACGTCTGTAGACCAAGATATAATTTTTTAAAAATAAGTT 2647
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2648 TATTTCTTTCAAGGTTTACAAATAACAAAGGTGCACCTTGTATTTAAAATTGCCATTATAGATGAGAGCGTGCA 2721
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2722 TGCACAGTCATTTTTGTTTAAGAGTAATATTTTTAATGTAATAGATTGTAAGACGTGGTGAGGGAGGGATCTGA 2795
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2796 CAGAGATGAATGTGCCAAGCAAAACCACAACTGTGTATATTTTAAAGCACATCATGGCTTTAAGTACCATGTTG 2869
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2870 TTAAGGATTCTCATGAAGTGCCATAGACTGTACATCAAATTAGAGTATTATTTCTTCAGTGTTATTGTTTTCAG 2943
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2944 AGCCACATTTTGTTGCATATTTGCTAGTACTAATCAGTCAAAGGGCACCATTCTTTTTTTTTTTTTTTGAAACC 3017
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3018 AAAGCTGTCTCAGAAATGGCCAATTTAACTTTACAGTAACAATAGACAGCACAACACAAACTCTCTCAATACAG 3091
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3092 ATAAACTCACACATACTGGAGATATATATATAATAGATATATATAAAATTATTTTAATGCATTGTAGTGTAATA 3165
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3166 TTTATGCATACTATACTGTATAACATGTTATTCAAAAGGGATTGCCATTTCTGAGACACAGTAACAAAAAAATG 3239
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3240 AGGAAATTATTTTGCTTCTATTTATAGCCTCTGTCAAAAGTCAAAAGACTATAAATGCTTTGCAAAAATGGTTT 3313
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3314 CACGTTTGCTTAAATGCTTCATCACAGTCACATTCAAAATAGTGACTCTAAACAAAGAAGAAAGCAGCACTGTC 3387
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3388 ATCAGATGCATGATAAACCAAAATATGAAAATGGGAAATGTTTAATTAACCTAGTAATTGGGTGGGTTAAGTAC 3461
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3462 ATGGGTGAATTTTATATGTGATTTTTGTTTTGTTTTGTTTTGTTCAGATTAACTGCTTATAGCCTTAGAAAGCC 3535
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3536 TTTTACAAAATTAAAAAAAAAATAGATGTGCATTCAGTTTTTAAGAATGGAATCATCCAAAGGAATTCCTTTTT 3609
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3610 TTGAGGTTTGGATGTTGCAGCTAGTAAAGGATATTTTTGCTCTGTTCAGCAGTTCTAAAAATTGCTGAAGTAGG 3683
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3684 GGCCAGGTCACTGGTAGTTATAGTATGGAATGGGAGAAGTGAAAGTTCAGTTATAGAACTTTCCATACTTCCAA 3757
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3758 GTTTACTGCAAGTTTTTATGCTTGAGAGAGATGCTTTCTAATATAAGACTGATGTGTTGATTTTACTGATTGTA 3831
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3832 CTGTACATCTATTAAAGCCTTAGATTATTACATTACGGGTTGGAACCCATACCAATGTAATTTCAATCGTGTTA 3905
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3906 AGAAAGTAATGGTGACTTCACATGTTATTGTAGTTAGTTACATTATAGAATATTACTTATTTTTCTTGTTAAAA 3979
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3980 TGTAGTTTTTCATTTCCTACATTTATTAGATTTTCATTTTCTATTAACAATTGAATACCATTTCAGTTTATAGA 4053
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4054 CTTGTTTTATTAGATTTTACCAATGAATTTTTCAAAATACAAAAAAAAGTAGTTTTTCCTTCATAACATACTCA 4127
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4128 GTTTTGAATTACATGTAGTGTCACATGAATATTCGTATTGTTAACTAAATGATTTATATTTTACTGATTTAATA 4201
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4202 TTACAGTGTAAGAATGTCAGTCATTGTTAGTTCTTGTCTAGTTTTCATTAAAAGAACAAAGATCTTTTATATGG 4275
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4276 ATATCTTATAAATATATAATCATTGCTAAGTAAGAAGTTAAGTTGTTGCTATCGCAACAATCCTGGCAGACAAT 4349
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4350 TGAGTAATATTTTGATGATTTATTTTGTTTGTAATTAGTTATTATAAGAAGATCTAGATCCTAGATATTAGAAT 4423
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4424 AAAATTTATTTTCTACTGTATCCATTTCAAATGTTAAAATATTGTTTAATATTTTTGAAATCCCTGAGTATCAG 4497
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4498 GCCTTGTTATAAATAAGCTGCATAATCAATAAATAGAACAAGGGACTTTTTGTTGATAATCCAAATACTCAAAG 4571
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4572 TTTACGTAATGAAAATTATAGCGTGTGTGCAAACTCTTGAGGGTTGATTATGCTGCAATTTAGCATGTTGGAAC 4645
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4646 GTCTAGGGAGAAGGTTGACTTTTTGCACTTCTGTATATAGTCAAAAGAGAGAAACCTGTATAATAGTAAGATCT 4719
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4720 TATTTTGAATAAAAACGTCTATAATTACAAGGAGTTTTGTTAAGGCTAATACAATGACAGACTGAGCAAAATTG 4793
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4794 CTTGCAAAAGTGGCACAGAGTTAGCACTCCATACCCCTTCAAACATGTTGCTTTGCTTTCTTGTGGACAGCTTG 4867
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4868 TAGTTTGCCAGGATTTTTTCAGCTGGAAAGATACGCCATCCTTTCAAACCCTCATGACTGACAAAAACTCCATG 4941
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4942 GGGCCAAATCTGCCTGAAGATCATTACCAAAAATAGCAGGTACTTCTACCATTAAGGTGAAATCATGGATCAGA 5015
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5016 TATTCCTTACATTTTTCAAAACTACTGCATGTTTAAAACTTCAACAAAAAAAGAGAGAAAGAACTATACTAAGA 5089
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5090 ACATATATTATTCAGATCAGTTTCTGCCAATTTCAGTGGTTTATTGTTCACAAAAAAATCTTCAAAACAAGTAT 5163
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5164 TGACTTTCACAAAATTTAAATCATAAACAGGCAAACCAAACAGCACACTGTAGCTATAGTTGTTATGTGATTGT 5237
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5238 TTTTTAATTGCTGTAGGATCCTGTTCTTTCAGCAGGTGAAAAATAAAACGCAGTTCAAATTTCATGGTTTTAAT 5311
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5312 TTTCAACTCAGAAGCACTCAAAAATGCAAAATGTGATAATGGGCACTTGTTTAAAAGAATTAGTGTATCCAGCC 5385
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5386 TTCACTCCAGCTGGTTAAAAATGTTGCACTTATCAGCAACCCTACCACTTTCATCTGCTGAAAGGACAAATGTG 5459
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5460 CTTGGTTTTACTATTATGTAATCACAACTTACTTTCTGCTTGTAGTTGCTTAAAATTATGTATTTTGTCTTGGG 5533
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 5534 CTGCAATTTGTTTTATGCTTATTTTATTATTACTGCAGTAGTTGACTTTGCTGTATGGAAAAATAAAGTGAAAT 5607
Query 1030 ------------------------------ 1029
Sbjct 5608 TGCCCTAATAAAACTTCTCTTTCTTAAGTA 5637