Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15496
Subject:
XR_001740147.2
Aligned Length:
5064
Identities:
1027
Gaps:
4035

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTCTTTTCACTGCAGCTGAATGAGTTGTGGCGCCCACAATGCTCCCATGACAAGGAGCTGACAAGTTCCATTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCGTCGCGGGCATCTTGGAATCATGACTCCCACAATGCCTTGGGCACTTGGTCGACAGTGGGGCCGCCTCTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAAAAAAATGTGAGAGGTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGTCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACGACAGCACATCCACCCTCCACCTCTAGCCCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACACCCCCATTTCTACTTATAATCAAGAGAAAAGCTCTAAGTATCTGGCATTGCCCTAGGCTGCTTTAGTGTTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAAGAAAAGTTTGCTGAAAAAGTAAGATATCTTCTGCCAGGAAATCAAGGAGGAAAAAAAAAATCATTTTCTCG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTTTGCTCTAAACTGCTGCATCTGTCTATGCCAAACTAATCAATACCGATTGCACCACCAAACTCCATTGCAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATTCAGCTGTGAGGAGATTCCCTTTCAGACAACTTTGCTGAAAGCAGCTTGGAAATTCGGTGTCGAAGGGTCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCACGTTTTCATGCTTGCATTTTGGGCTCCAAATTGGCACTGGGAAGGGGTTACTGAGAGCACAAGGCTGATAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CAGGCCCTACTTTTAAACGTTCATCTACTTACAATCCTAGTATTTCTCTAAAAACCAAAACCTCTTTGAATTAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAGTTTCATGCTGTGAATTTCTAGTGGGAGATCTTTTCCTTGATATTGACGACACAATTTTCCATGTACTTTTA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGCAGGGAGTGGGGAAAAGTATTTTGAGGGGACATTTTCATCATCAGTTCAGCTTTTTTTTTTTGGTTGTTGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCTTTTTTGGGGGGGTTGGGTTTGTTGGTTTCACTGAAACATTTAACTACCTGTAAAATCTAAACATGGCTGTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGAGGGGGACTTGCTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCT  1110

Query    1  --------------ATGGGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCCACCCCCACATTTAAAAACG  60
                          |..|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GCTTTGATTCATTGAAAGGCCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCCACCCCCACATTTAAAAACG  1184

Query   61  CAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATGTTGGCCCAGCAAATGCAACT  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CAGTTGGAGATAAATGGACGCAATAACTTGATTCAGCAGAAGAACATGGCCATGTTGGCCCAGCAAATGCAACT  1258

Query  135  AGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGTTGCACCAAGCTTAGCCACCA  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTGCCAATGTTTTCAGTTGCACCAAGCTTAGCCACCA  1332

Query  209  ATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGGTCCCGGCAGAGATCTTGCCG  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATGCATCAGCAGCCGCCTTTAATCCCTATCTGGGACCTGTTTCTCCAAGCCTGGTCCCGGCAGAGATCTTGCCG  1406

Query  283  ACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCTGCAGCTGCTGCACAGAAATT  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ACTGCACCAATGTTGGTTACAGGGAATCCGGGTGTCCCTGTACCTGCAGCTGCTGCAGCTGCTGCACAGAAATT  1480

Query  357  AATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAACCGAGGAGAAAATGATTGTC  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AATGCGAACAGACAGACTTGAGGTATGTCGAGAGTACCAACGTGGCAATTGCAACCGAGGAGAAAATGATTGTC  1554

Query  431  GGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCACTGTGTGTATGGATTACATC  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GGTTTGCTCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCACTGTGTGTATGGATTACATC  1628

Query  505  AAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTGCAAGCCAAGATCAAGGCTGC  578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTTCATCCCCCTGCACATTTGCAAGCCAAGATCAAGGCTGC  1702

Query  579  CCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGCCATGACTCAGTCGGCTGTCA  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CCAATACCAGGTCAACCAGGCTGCAGCTGCACAGGCTGCAGCCACCGCAGCTGCCATGACTCAGTCGGCTGTCA  1776

Query  653  AATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAG  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAG  1850

Query  727  AGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCT  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCT  1924

Query  801  AGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCAGGCTCAATATTGTGCATGACACCCGCTACAA  874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGCCAACATGCAGTTACAACAGCATACAGCATTTCTCCCACCAGGCTCAATATTGTGCATGACACCCGCTACAA  1998

Query  875  GTGTTGTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCC  948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GTGTTGTTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCC  2072

Query  949  TTCGCTGCAACAGCCACAGCCAACCA------------------------------------------------  974
            ||||||||||||||||||||||||||                                                
Sbjct 2073  TTCGCTGCAACAGCCACAGCCAACCAGCCCCATCCTTGATGCTTCTACACTGTTGGGTGCAACATCCTGTCCTG  2146

Query  975  ----------------GATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATG---  1029
                            |||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct 2147  CAGCAGCAGGAAAAATGATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAG  2220

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2221  AATTTTCATCACTAAACAATCATGCTAAAGAGGAAAGGACAGTGTGCTTGGTTAGAGTAAAGGACGAGGTCATT  2294

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2295  AGCCATATTGTATATATCGTCAAGCAACACACACAAAAGTTCCTCAGCCACAAGACATCCACATATTGCATGTT  2368

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2369  AACCAGAAGAAAAGACAACATTTTCCGGAAATCCACTGCACACTGTTGCCTATACACTTTGTACATTTAATTGA  2442

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2443  TATTTGTGCTGAGGTGATATTCCTGTCTAAAAGAACAACATTGTCTTTCTTTTCTAGCACAGAGTTATGCATTC  2516

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2517  AAAGATGCATACCTAGTTAGTTTCCTATATATTCATGCCATCTTGAAAAGACAGACTATGGTGTAACCATGATT  2590

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2591  CTATTATGTATTGGTACGTCTGTAGACCAAGATATAATTTTTTAAAAATAAGTTTATTTCTTTCAAGGTTTACA  2664

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2665  AATAACAAAGGTGCACCTTGTATTTAAAATTGCCATTATAGATGAGAGCGTGCATGCACAGTCATTTTTGTTTA  2738

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2739  AGAGTAATATTTTTAATGTAATAGATTGTAAGACGTGGTGAGGGAGGGATCTGACAGAGATGAATGTGCCAAGC  2812

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2813  AAAACCACAACTGTGTATATTTTAAAGCACATCATGGCTTTAAGTACCATGTTGTTAAGGATTCTCATGAAGTG  2886

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2887  CCATAGACTGTACATCAAATTAGAGTATTATTTCTTCAGTGTTATTGTTTTCAGAGCCACATTTTGTTGCATAT  2960

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2961  TTGCTAGTACTAATCAGTCAAAGGGCACCATTCTTTTTTTTTTTTTTTGAAACCAAAGCTGTCTCAGAAATGGC  3034

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3035  CAATTTAACTTTACAGTAACAATAGACAGCACAACACAAACTCTCTCAATACAGATAAACTCACACATACTGGA  3108

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3109  GATATATATATAATAGATATATATAAAATTATTTTAATGCATTGTAGTGTAATATTTATGCATACTATACTGTA  3182

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3183  TAACATGTTATTCAAAAGGGATTGCCATTTCTGAGACACAGTAACAAAAAAATGAGGAAATTATTTTGCTTCTA  3256

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3257  TTTATAGCCTCTGTCAAAAGTCAAAAGACTATAAATGCTTTGCAAAAATGGTTTCACGTTTGCTTAAATGCTTC  3330

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3331  ATCACAGTCACATTCAAAATAGTGACTCTAAACAAAGAAGAAAGCAGCACTGTCATCAGATGCATGATAAACCA  3404

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3405  AAATATGAAAATGGGAAATGTTTAATTAACCTAGTAATTGGGTGGGTTAAGTACATGGGTGAATTTTATATGTG  3478

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3479  ATTTTTGTTTTGTTTTGTTTTGTTCAGATTAACTGCTTATAGCCTTAGAAAGCCTTTTACAAAATTAAAAAAAA  3552

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3553  AATAGATGTGCATTCAGTTTTTAAGAATGGAATCATCCAAAGGAATTCCTTTTTTTGAGGTTTGGATGTTGCAG  3626

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3627  CTAGTAAAGGATATTTTTGCTCTGTTCAGCAGTTCTAAAAATTGCTGAAGTAGGGGCCAGGTCACTGGTAGTTA  3700

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3701  TAGTATGGAATGGGAGAAGTGAAAGTTCAGTTATAGAACTTTCCATACTTCCAAGTTTACTGCAAGTTTTTATG  3774

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3775  CTTGAGAGAGATGCTTTCTAATATAAGACTGATGTGTTGATTTTACTGATTGTACTGTACATCTATTAAAGCCT  3848

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3849  TAGATTATTACATTACGGGTTGGAACCCATACCAATGTAATTTCAATCGTGTTAAGAAAGTAATGGTGACTTCA  3922

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3923  CATGTTATTGTAGTTAGTTACATTATAGAATATTACTTATTTTTCTTGTTAAAATGTAGTTTTTCATTTCCTAC  3996

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3997  ATTTATTAGATTTTCATTTTCTATTAACAATTGAATACCATTTCAGTTTATAGACTTGTTTTATTAGATTTTAC  4070

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4071  CAATGAATTTTTCAAAATACAAAAAAAAGTAGTTTTTCCTTCATAACATACTCAGTTTTGAATTACATGTAGTG  4144

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4145  TCACATGAATATTCGTATTGTTAACTAAATGATTTATATTTTACTGATTTAATATTACAGTGTAAGAATGTCAG  4218

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4219  TCATTGTTAGTTCTTGTCTAGTTTTCATTAAAAGAACAAAGATCTTTTATATGGATATCTTATAAATATATAAT  4292

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4293  CATTGCTAAGTAAGAAGTTAAGTTGTTGCTATCGCAACAATCCTGGCAGACAATTGAGTAATATTTTGATGATT  4366

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4367  TATTTTGTTTGTAATTAGTTATTATAAGAAGATCTAGATCCTAGATATTAGAATAAAATTTATTTTCTACTGTA  4440

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4441  TCCATTTCAAATGTTAAAATATTGTTTAATATTTTTGAAATCCCTGAGTATCAGGCCTTGTTATAAATAAGCTG  4514

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4515  CATAATCAATAAATAGAACAAGGGACTTTTTGTTGATAATCCAAATACTCAAAGTTTACGTAATGAAAATTATA  4588

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4589  GCGTGTGTGCAAACTCTTGAGGGTTGATTATGCTGCAATTTAGCATGTTGGAACGTCTAGGGAGAAGGTTGACT  4662

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4663  TTTTGCACTTCTGTATATAGTCAAAAGAGAGAAACCTGTATAATAGTAAGATCTTATTTTGAATAAAAACGTCT  4736

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4737  ATAATTACAAGGAGTTTTGTTAAGGCTAATACAATGACAGACTGAGCAAAATTGCTTGCAAAAGTGGCACAGAG  4810

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4811  TTAGCACTCCATACCCCTTCAAACATGTTGCTTTGCTTTCTTGTGGACAGCTTGTAGTTTGCCAGGATTTTTTC  4884

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4885  AGCTGGAAAGATACGCCATCCTTTCAAACCCTCATGACTGACAAAAACTCCATGGGGCCAAATCTGCCTGAAGA  4958

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4959  TCATTACCAAAAATAGCAGGTACTTCTACCATTAAGGTGAAATCATGGATCAGATATTCCTTACATTTTTCAAA  5032

Query 1030  --------------------------------  1029
                                            
Sbjct 5033  ACTACTGCATGTTTAAAACTTCAACAAAAAAA  5064

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