Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15784
Subject:
XR_001738701.2
Aligned Length:
4756
Identities:
986
Gaps:
3755

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAGCCTTTTCCTTTGGTCACTCACCACCAGCTTACTCATTTTTTTTTTTTTTTGCACATTACCTTCCACACAAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTTTACTTTGTGGCCACAATGTGCATACTTTTTTTGATTGTTACTTTCATGACATAGCAAATTGTTTCTATAGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCTTTATAAAGGTCATTTAAAATGACATGTGCAGTAAGTCAAAGTCTTCTTGTGCTAGGAAATTTGAAAAAAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAAGTGTAGAGAAAAATACAAAAATTACTGAATCTGAACATCTATAGAGAAGTGTTGTTAGCAGTTGGTTTAT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTCCTTCCAATCACATACAGATCATATCTGATGGGTAAAGAATATTCCATACTGTCAACAGACCACACTGTCTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTAAAATCGCTTCAGCAGTGAGGATCCTCTGGAATAGATCTTGTTAATCCTGAGGAATTATTCTCCCAGCGGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCTATGAGAAGTGGAATCACCAGATGTAGTAATTCCTGACAGAACTGCCGCCTGCTTGTGTGGCTGAGATGCT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GACCTAGGTATCAGGCTGGTCGCGCCGGAACCCAGCACCCACGCTGAGTCTTTCTGAGCTCCACTCTGCTCCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTAGATATTAACCACCTGAGGTAGCTGTCCAGATTCAAGGCGGTAGTGATTTTGTGTGTCTGTGTATTTATCAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGGGTCCGCGGCGGGAACGCAGGGGCTGTGTCCCACGTCCCCAAACCTCTAGTAGGGTACGGCGCGATGAACAT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTCCATAAACCTTAAACCTCCCGGCGCTCAGTCACTGGTTCTTATTTCAGCCCTCTTAGCCCCGTAGGTCGGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCGCTGAAAACCTTTCTGGTACCTGGGGCCTTTCCTAAGAAAAAGGCACATGTCTCGCACATTTCAGTCTGGTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGCAACTTCAGGCGCGCCAGCACCCGAGGTTCTTCCGACCGGCCGCTCCGCTCCCAAGCCGGGAACTTCCCAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAATTGGCTCGGCCTCCGGGCGCGGGGGACAGCATCGGGAGGAGTGGGACTCCGGGCGCCGCGCACGGGCCGAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GACAGCCGGGCTTGGGAGGCCCTGCCCGCCGCCCCGCGTCCTCCCGGCCACTGCCACCCCGCGCATCCGGAGCC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCAGCAGACTCGGCGGGGCCCGGAGCCCCACGCCCCCGGCCCGCCCCTGGCCGCCACTTGTTTACTCCCCGGCG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CAGCCTAGTCCGACCCTGGGGCCCGCCCCCGCCCACCGCCTATTGGCCGAGGAGGCGCGAAGAGCCGTAACGAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGGCCCGGGGAGGCGCGGGGCGAGCGGGGTAGGCTGCGCGAGAGGCCGAGAGGGGGCAGCAGGCGATGGCGGCG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCGGTAGCTGCGGCGGGTCGGTTAGGCTGGTTGTTCGCCGCGCTCTGCCTGGGCAACGCCGCGGGGGAGGCCGC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCCGGGCCCGCGAGTGCTGGGCTTCTGCCTGGAGGAGGATGGAGCGGCGGGCGCGGGTTGGGTACGCGGAGGGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CGGCGCGGGACACGCCGGACGCCACCTTCCTCCTGCGCCTCTTCGGCCCGGGCTTCGCCAACAGCTCTTGGTCC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGGGTGGCCCCGGAGGGGGCGGGCTGCCGGGAGGAGGCGGCCTCCCCCGCGGGCGAGTGGCGCGCGCTGCTGCG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CTTGCGCCTGCGGGCCGAGGCCGTGCGCCCGCACTCGGCGCTGCTGGCGGTGCGCGTGGAGCCGGGTGGCGGGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CGGCTGAGGAGGCGGCGCCGCCCTGGGCTCTGGGCCTGGGGGCGGCCGGGCTGCTGGCGCTGGCAGCGCTGGCG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CGAGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCTGCCGAGGTGCAGGTGCTGCGCGAGAGCGGCTCGGAGGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGAGCGTGCGGCGGCGCGGCGTTTGGAGCCCGCGCGGCGCTGGGCCGGCTGCGCCTTGGGCGCGCTGCTGCTGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGGCCAGCCTGGCGCAGGCGGCGCTGGCGGTGCTGCTGTACCGCGCGGCCGGCCAGCGTGCGGTGCCCGCCGTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTGGGCAGCGCGGGGCTCGTGTTCCTGGTGGGAGAGGTGGTGCCGGCCGCCGTGAGCGGGCGCTGGACGCTGGC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCTGGCGCCGCGAGCGCTCGGCCTCAGCCGCCTGGCCGTCCTGCTCACTCTGCCCGTCGCGCTGCCCGTGGGGC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGCTGCTGGAGCTGGCGGCGCGGCCCGGGCGGCTGCGGGAGCGGGTGCTGGAGCTGGCGCGCGGCGGCGGCGAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCCTACAGCGATCTCAGCAAGGGCGTGCTGCGCTGCCGGACCGTGGAGGACGTGCTCACGCCCCTCGAAGACTG  2294

Query    1  ----ATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCCACACGCGCA  70
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CTTCATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCCACACGCGCA  2368

Query   71  TCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTCGTGGATCCC  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  TCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTCGTGGATCCC  2442

Query  145  GAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAACGACACCAA  218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAACGACACCAA  2516

Query  219  GCTGGACGCTGTCCTGGAGGAATTCAAGCGAGGAGA-------------CACCGT------GGTGAA----GAG  269
            ||||||||||||||||||||||||||||||||| ||             ||.|||      ||||||    |||
Sbjct 2517  GCTGGACGCTGTCCTGGAGGAATTCAAGCGAGG-GAAGTCCCACCTGGCCATCGTGCAGAAGGTGAACAACGAG  2589

Query  270  ---GAAG-----CCTGCTTCTCTGA-----------TGGCCCCTCTGAAG--CG-GAAGGAGGAGTTC------  315
               ||||     ||  |||||..||           |||.|.|.|||.||  || ||..||||||.||      
Sbjct 2590  GGTGAAGGCGACCC--CTTCTACGAGGTCCTGGGCCTGGTCACCCTGGAGGACGTGATCGAGGAGATCATCAGG  2661

Query  316  -------TCCTTGTTCAAGGTGTCTGATGATGAATATAAAGTAACAATCTCGCCTCAGCTGCTCTTGGCCACCC  382
                   ||||.|    |.|.||||||.||                                      |.||| 
Sbjct 2662  TCCGAGATCCTGG----ACGAGTCTGAAGA--------------------------------------CTACC-  2692

Query  383  AGCGCTTCCTGTCCCGAGAAGTGGATGTATTCAGCCCGCTGCGCATCTCTGAGAAGGTCCTGCTGCACCTGTTG  456
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2693  ------------------AAGTGGATGTATTCAGCCCGCTGCGCATCTCTGAGAAGGTCCTGCTGCACCTGTTG  2748

Query  457  AAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGGCCACACACCACTACCTGTACCA  530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2749  AAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGGCCACACACCACTACCTGTACCA  2822

Query  531  GCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAAGTGGAGATCGGGAAAGAGGGTC  604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2823  GCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAAGTGGAGATCGGGAAAGAGGGTC  2896

Query  605  TGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGTGCCATCCTCGGTTCACCAGTCC  678
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2897  TGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGTGCCATCCTCGGTTCACCAGTCC  2970

Query  679  CCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTGACGGCACGCATTCATCTGCGTA  752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2971  CCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTGACGGCACGCATTCATCTGCGTA  3044

Query  753  TTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTTACGCGACTGCAGTACCTCAATG  826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3045  TTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTTACGCGACTGCAGTACCTCAATG  3118

Query  827  CACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGACCTGCAGGTTATTCCAGGCAGC  900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3119  CACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGACCTGCAGGTTATTCCAGGCAGC  3192

Query  901  CAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGC------------------------------------  938
            ||||||||||||||||||||||||||||||||||||||                                    
Sbjct 3193  CAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGCAGCCTTCCCAGTAGACCTTTCCCTCTTTGGCACAGT  3266

Query  939  ----------------------------------------------------------------AGGGTCCAGC  948
                                                                            ||||||||||
Sbjct 3267  TGGAAACTGCAGTTGATAAATGACTGTGGACTAGTGCGCGTTTTTTGTTTTCAGAGCACACGTAAGGGTCCAGC  3340

Query  949  CACAGCA-------------------------------------------------------------------  955
            |||||||                                                                   
Sbjct 3341  CACAGCAGGCCCGGCGTCCCGGTGGAAGGCAGCCCTGGGCGGAACCCAGGCGTTTAACGGCTCACTAGGCAGCC  3414

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 3415  CCAGATCTGGGGAACAGATGAGCACGTGGGGAGCTGGAGTGAGCTGAGCAGAAGTTTTGTGCCCGCCTGCCCCC  3488

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 3489  ATCCCCTCCAGGCCACGTTTTAGATGGCCCTTGTAGTTGCGGGTCCTGGGTGTCCTCAGAACTAGACATCAATG  3562

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 3563  CCTGGATCCTTCAGCCGGCCCTGCCCTCCTTTAGGAGACAGGAGTCACCAGGGCACAGCCCTCCAGGCCCGCCT  3636

Query  956  -----------------------------------------GGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGG  988
                                                     |||||||||||||||||||||||||||||||||
Sbjct 3637  CAGGAAGGAATGAAAGGAATGCCATCATCTCTAGTTCCCAGGGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGG  3710

Query  989  ACAGTGCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGG  1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3711  ACAGTGCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGG  3784

Query 1063  CCG-----------------------------------------------------------------------  1065
            |||                                                                       
Sbjct 3785  CCGTGACCTCTATTTGTTTGCTTTTAATTTGCCAACCTATCGCTGCTGGCAGCACTTTTTGAGCAAGCCGAGAG  3858

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 3859  CACCCATTTTGGCTGGGGGTTCAGATCGATGGCCTTGTCCATGTTGTCCTTTCTGGCTTCCCTGATGGTGTCAT  3932

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 3933  GTTTCAGCGCATGCGCCCCAGCCTTTCCCATGTGCCAAACCAGAAGCTCCACTGCCCGTAGGCTGTCCCTGTAG  4006

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4007  CCCTGCTCCCTCCCTGGAGGCTGCTCTTCTGATTCTGAGAGCTGGCCTAGTGGTGCTGAGGGCCCCTTTCTGCT  4080

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4081  TCTCTGCCCACCTGCTGAGTTGCCACTCGCAGTGTTGTCAGTTCCCGTGTTCTGAGAAGAGGTCATGCCTGGGA  4154

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4155  GGAAGGGATCGTCATGCTGCATCGAATCCTCTCTCCGCCGTGTGGCCCCCAGGAGAGTAGCTGCCTGTTGCACC  4228

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4229  TGCTCCACACCTCCCCACAGCCTCCCTGCAGGTGCTGTGTGGCCGTGATGTGCAGAGAGCAGTGAGGGAGGGTT  4302

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4303  CATGAACCAGGTGGATCCTCTTTAAAAAAAAAAAAGTTTTTGTTATATCTCTAGAACATTTCAAGTCTTTTCCT  4376

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4377  TTTTTTCTGTTCCTAGCTATGGGGTTTTAGAGAAGTGGGAACAGGAAGGCATTTGTCTTTTTCTTCTAGTTTAC  4450

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4451  TACATTTTCCTTCCGTAGTTCTTCAGCTGTGTGGAAACGGGCATCACAAGGACATAGGATCATAGATTGGGTAG  4524

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4525  GGAGGGAGGAGGATTTCTGGAACTTTTCTCAAAGGAATTTGGACCCTTATAAATGGGACTGAAGGTCAAAACAA  4598

Query 1066  --------------------------------------------------------------------------  1065
                                                                                      
Sbjct 4599  CAGTGATATCCTTGCTTAGAAATTGTCCTCAAGGAATAAACTCTGAGAGCAAGCCCGGGTTGGAAACAGATGCT  4672

Query 1066  --------------------  1065
                                
Sbjct 4673  TTAAAATCCTCTCTCCAGAA  4692

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