Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15888
Subject:
NM_001350079.2
Aligned Length:
4890
Identities:
762
Gaps:
4128

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGGAGACTGGCTTTTCGAGGCGCTGGTTGTGCTCTGGTAAAGCTGAAGAAGTTGGATTCCATGGGTTCCAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGAAGAAGAGCTACCTCCCCTTCCAGCAGTGTCAGCGGGGACTTTGATGATGGGCACCATTCTGTGTCAACAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGGCCCAAGCAGGAAAAGGAGGAGACTTTCCAATCTTCCAACTGTAGATCCTATTGCCGTGTGCCATGAACTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TATAATACCATCCGAGACTATAAGGATGAACAGGGCAGACTTCTCTGTGAGCTCTTCATTAGGGCACCAAAGCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAGAAATCAACCAGACTATTATGAAGTGGTTTCTCAGCCCATTGACTTGATGAAAATCCAACAGAAACTAAAAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGAAGAGTATGATGATGTTAATTTGCTGACTGCTGACTTCCAGCTTCTTTTTAACAATGCAAAGTCCTATTAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAGCCAGATTCTCCTGAATATAAAGCCGCTTGCAAACTCTGGGATTTGTACCTTCGAACAAGAAATGAGTTTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCAGAAAGGAGAAGCAGATGACGAAGATGATGATGAAGATGGGCAAGACAATCAGGGCACAGTGACTGAAGGAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTTCTCCAGCTTACTTGAAGGAGATCCTGGAGCAGCTTCTTGAAGCCATAGTTGTAGCTACAAATCCATCAGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CGTCTCATTAGCGAACTTTTTCAGAAACTGCCTTCTAAAGTGCAATATCCAGATTATTATGCAATAATTAAGGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCTATAGATCTCAAGACCATTGCCCAGAGGATACAGAATGGAAGCTACAAAAGTATTCATGCAATGGCCAAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATATAGATCTCCTCGCAAAAAATGCCAAAACTTATAATGAGCCTGGCTCTCAAGTATTCAAGGATGCAAATTCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATTAAAAAAATATTTTATATGAAAAAGGCTGAAATTGAACATCATGAAATGGCTAAGTCAAGTCTTCGAATGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GACTCCATCCAACTTGGCTGCAGCCAGACTGACAGGTCCTTCACACAGTAAAGGCAGCCTTGGTGAAGAGAGAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATCCCACTAGCAAGTATTACCGTAATAAAAGAGCAGTACAAGGAGGTCGTTTATCAGCAATTACAATGGCACTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAATATGGCTCAGAAAGTGAAGAAGATGCTGCTTTAGCTGCTGCACGCTATGAAGAGGGAGAGTCAGAAGCAGA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AAGCATCACTTCCTTTATGGATGTTTCAAATCCTTTTTATCAGCTTTATGACACAGTTAGGAGTTGTCGGAATA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACCAAGGGCAGCTAATAGCTGAACCTTTTTACCATTTGCCTTCAAAGAAAAAATACCCTGATTATTACCAGCAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATTAAAATGCCCATATCACTACAACAGATCCGAACAAAACTGAAGAATCAAGAATATGAAACTTTAGATCATTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGAGTGTGATCTGAATTTAATGTTTGAAAATGCCAAACGCTATAATGTGCCCAATTCAGCCATCTACAAGCGAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTCTAAAATTGCAGCAAGTTATGCAGGCAAAGAAGAAAGAGCTTGCCAGGAGAGACGATATCGAGGACGGAGAC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGCATGATCTCTTCAGCCACCTCTGATACTGGTAGTGCCAAAAGAAAAAGTAAAAAGAACATAAGAAAGCAGCG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AATGAAAATCTTATTCAATGTTGTTCTTGAAGCTCGAGAGCCAGGTTCAGGCAGAAGACTTTGTGACCTATTTA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGGTTAAACCATCCAAAAAGGACTATCCTGATTATTATAAAATCATCTTGGAGCCAATGGACTTGAAAATAATT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GAGCATAACATCCGCAATGACAAATATGCTGGTGAAGAGGGAATGATAGAAGACATGAAGCTGATGTTCCGGAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TGCCAGGCACTATAATGAGGAGGGCTCCCAGGTTTATAATGATGCACATATCCTGGAGAAGTTACTCAAGGAGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAAGGAAAGAGCTGGGCCCACTGCCTGATGATGATGACATGGCTTCTCCCAAACTCAAGCTGAGTAGGAAGAGT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GGCATTTCTCCTAAAAAATCAAAATACATGACTCCAATGCAGCAGAAACTAAATGAGGTCTATGAAGCTGTAAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GAACTATACTGATAAGAGGGGTCGCCGCCTCAGTGCCATATTTCTGAGGCTTCCCTCTAGATCTGAGTTGCCTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACTACTATCTGACTATTAAAAAGCCCATGGACATGGAAAAAATTCGAAGTCACATGATGGCCAACAAGTACCAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GATATTGACTCTATGGTTGAGGACTTTGTCATGATGTTTAATAATGCCTGTACATACAATGAGCCGGAGTCTTT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GATCTACAAAGATGCTCTTGTTCTACACAAAGTCCTGCTTGAAACACGCAGAGACCTGGAGGGAGATGAGGACT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTCATGTCCCAAATGTGACTTTGCTGATTCAAGAGCTTATCCACAATCTTTTTGTGTCAGTCATGAGTCATCAG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GATGATGAGGGAAGATGCTACAGCGATTCTTTAGCAGAAATTCCTGCTGTGGATCCCAACTTTCCTAACAAACC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ACCCCTTACATTTGACATAATTAGGAAGAATGTTGAAAATAATCGCTACCGTCGGCTTGATTTATTTCAAGAGC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATGTTTGAAGTATTGGAACGAGCAAGAAGGATGAATCGGACAGATTCAGAAATATATGAAGATGCAGTAGAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CTTCAGCAGTTTTTTATTAAAATTCGTGATGAACTCTGCAAAAATGGAGAGATTCTTCTTTCACCGGCACTCAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CTATACCACAAAACATTTGCATAATGATGTGGAGAAAGAGAGAAAGGAAAAATTGCCAAAAGAAATAGAGGAAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATAAACTAAAACGAGAAGAAGAAAAAAGAGAAGCTGAAAAGAGTGAAGATTCCTCTGGTGCTGCAGGCCTCTCA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GGCTTACATCGCACATACAGCCAGGACTGTAGCTTTAAAAACAGCATGTACCATGTTGGAGATTACGTCTATGT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GGAACCTGCAGAGGCCAACCTACAACCACATATCGTCTGTATTGAAAGACTGTGGGAGGATTCAGCTGAAAAAG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AAGTTTTTAAGAGTGACTATTACAACAAAGTTCCAGTTAGTAAAATTCTAGGCAAGTGTGTGGTCATGTTTGTC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AAGGAATACTTTAAGTTATGCCCAGAAAACTTCCGAGATGAGGATGTTTTTGTCTGTGAATCACGGTATTCTGC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CAAAACCAAATCTTTTAAGAAAATTAAACTGTGGACCATGCCCATCAGCTCAGTCAGGTTTGTCCCTCGGGATG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGCCTCTGCCTGTGGTTCGCGTGGCCTCTGTATTTGCAAATGCAGATAAAGGTGATGATGAGAAGAATACAGAC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AACTCAGAGGACAGTCGAGCTGAAGACAATTTTAACTTGGAAAAGGAAAAAGAAGATGTCCCTGTGGAAATGTC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CAATGGTGAACCAGGTTGCCACTACTTTGAGCAGCTCCATTACAATGACATGTGGCTGAAGGTTGGCGACTGTG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TCTTCATCAAGTCCCATGGCCTGGTGCGTCCTCGTGTGGGCAGAATTGAAAAAGTATGGGTTCGAGATGGAGCT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GCATATTTTTATGGCCCCATCTTCATTCACCCAGAAGAAACAGAGCATGAGCCCACAAAAATGTTCTACAAAAA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  AGAAGTATTTCTGAGTAATCTGGAAGAAACCTGCCCCATGACATGTATTCTCGGAAAGTGTGCTGTGTTGTCAT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TCAAGGACTTCCTCTCCTGCAGGCCAACTGAAATACCAGAAAATGACATTCTGCTTTGTGAGAGCCGCTACAAT  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  GAGAGCGACAAGCAGATGAAGAAATTCAAAGGATTGAAGAGGTTTTCACTCTCTGCTAAAGTGGTAGATGATGA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  AATTTACTACTTCAGAAAACCAATTGTTCCTCAGAAGGAGCCATCACCTTTGCTGGAAAAGAAGATCCAGTTGC  3922

Query    1  --------------------------------------------------ATGGGAGAAGAAGATAGTGAGGTC  24
                                                              ||||||||||||||||||||||||
Sbjct 3923  TAGAAGCTAAATTTGCCGAGTTAGAAGGTGGAGATGATGATATTGAAGAGATGGGAGAAGAAGATAGTGAGGTC  3996

Query   25  ATTGAACCTCCTTCTCTACCTCAGCTTCAGACCCCCCTGGCCAGTGAGCTGGACCTCATGCCCTACACACCCCC  98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997  ATTGAACCTCCTTCTCTACCTCAGCTTCAGACCCCCCTGGCCAGTGAGCTGGACCTCATGCCCTACACACCCCC  4070

Query   99  ACAGTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAGGCTCCAAACGGAAAATCAACATGAGTGGCT  172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071  ACAGTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAGAAGGAAGGCTCCAAACGGAAAATCAACATGAGTGGCT  4144

Query  173  ACATCCTGTTCAGCAGTGAGATGAGGGCTGTGATTAAGGCCCAACACCCAGACTACTCTTTCGGGGAGCTCAGC  246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145  ACATCCTGTTCAGCAGTGAGATGAGGGCTGTGATTAAGGCCCAACACCCAGACTACTCTTTCGGGGAGCTCAGC  4218

Query  247  CGCCTGGTGGGGACAGAATGGAGAAATCTTGAGACAGCCAAGAAAGCAGAATATGAAGGCATGATGGGTGGCTA  320
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 4219  CGCCTGGTGGGGACAGAATGGAGAAATCTTGAGACAGCCAAGAAAGCAGAATATGAA-----------------  4275

Query  321  TCCGCCAGGCCTTCCACCTTTGCAGGGCCCAGTTGATGGCCTTGTTAGCATGGGCAGCATGCAGCCACTTCACC  394
                                                                                      
Sbjct 4276  --------------------------------------------------------------------------  4275

Query  395  CTGGGGGGCCTCCACCCCACCATCTTCCGCCAGGTGTGCCTGGCCTCCCGGGCATCCCACCACCGGGTGTGATG  468
                                                                             |||||||||
Sbjct 4276  -----------------------------------------------------------------GGTGTGATG  4284

Query  469  AACCAAGGAGTGGCCCCTATGGTAGGGACTCCAGCACCAGGTGGAAGTCCATATGGACAACAGGTGGGAGTTTT  542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4285  AACCAAGGAGTGGCCCCTATGGTAGGGACTCCAGCACCAGGTGGAAGTCCATATGGACAACAGGTGGGAGTTTT  4358

Query  543  GGGGCCTCCAGGGCAGCAGGCACCACCTCCATATCCCGGCCCACATCCAGCTGGACCCCCTGTCATACAGCAGC  616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4359  GGGGCCTCCAGGGCAGCAGGCACCACCTCCATATCCCGGCCCACATCCAGCTGGACCCCCTGTCATACAGCAGC  4432

Query  617  CAACAACACCCATGTTTGTAGCTCCCCCACCAAAGACCCAGCGGCTTCTTCACTCAGAGGCCTACCTGAAATAC  690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4433  CAACAACACCCATGTTTGTAGCTCCCCCACCAAAGACCCAGCGGCTTCTTCACTCAGAGGCCTACCTGAAATAC  4506

Query  691  ATTGAAGGACTCAGTGCGGAGTCCAACAGCATTAGCAAGTGGGATCAGACACTGGCAGCTCGAAGACGCGACGT  764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4507  ATTGAAGGACTCAGTGCGGAGTCCAACAGCATTAGCAAGTGGGATCAGACACTGGCAGCTCGAAGACGCGACGT  4580

Query  765  CCATTTGTCGAAAGAACAGGAGAGCCGCCTACCCTCTCACTGGCTGAAAAGCAAAGGGGCCCACACCACCATGG  838
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4581  CCATTTGTCGAAAGAACAGGAGAGCCGCCTACCCTCTCACTGGCTGAAAAGCAAAGGGGCCCACACCACCATGG  4654

Query  839  CAGATGCCCTCTGGCGCCTTCGAGATTTGATGCTCCGGGACACCCTCAACATTCGCCAAGCATACAACCTAGAA  912
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4655  CAGATGCCCTCTGGCGCCTTCGAGATTTGATGCTCCGGGACACCCTCAACATTCGCCAAGCATACAACCTAGAA  4728

Query  913  AATGTT  918
            ||||||
Sbjct 4729  AATGTT  4734

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