# Changelog

## 3.2.11
## Improvements
* Allow empty barcode IDs in row and column reference files

## 3.2.9
## Improvements
* Updated manual

## 3.2.3
### Bugfixes
* Correctly skip writing correlation file when there is only a single construct barcode or a single
  experimental condition

## 3.2.1
### Improvements
* Added whitespace to run info file for readability

## 3.2.0
### Improvements
* Add `Normalized Match` column to quality file
* Change quality file header from `Read counts for sample barcodes without associated conditions:` to 
  `Read counts for most common sample barcodes without associated conditions:`
* Change terminology from `scores` to `counts`
* Log version and run configuration in run info file
* Add changelog

## 3.0.5
### Bugfixes
* Fixed path to PoolQ jar in `Makefile` and scripts distributed with PoolQ
### Improvements
* Added regression tests for barcode counts and log-normalized counts files

## 3.0.4
### Bugfixes
* Fixed delimiter in `Construct IDs` field of log-normalized counts files

## 3.0.1
### Improvements
* Made 5' search limit optional when specifying a row barcode search template

## 3.0.0
* Complete re-write of PoolQ