An Error Occurred:

factory method with defined scope outjected a value: footer

+ Stack Trace

java.lang.IllegalArgumentException: factory method with defined scope outjected a value: footer
	at org.jboss.seam.Component.handleFactoryMethodResult(Component.java:2070)
	at org.jboss.seam.Component.getInstanceFromFactory(Component.java:2044)
	at org.jboss.seam.Component.getInstance(Component.java:1978)
	at org.jboss.seam.Component.getInstance(Component.java:1950)
	at org.jboss.seam.Component.getInstance(Component.java:1944)
	at org.jboss.seam.Namespace.getComponentInstance(Namespace.java:55)
	at org.jboss.seam.Namespace.getComponentInstance(Namespace.java:50)
	at org.jboss.seam.el.SeamELResolver.resolveBase(SeamELResolver.java:166)
	at org.jboss.seam.el.SeamELResolver.getValue(SeamELResolver.java:53)
	at javax.el.CompositeELResolver.getValue(CompositeELResolver.java:63)
	at com.sun.faces.el.FacesCompositeELResolver.getValue(FacesCompositeELResolver.java:64)
	at org.jboss.el.parser.AstIdentifier.getValue(AstIdentifier.java:44)
	at org.jboss.el.parser.AstValue.getValue(AstValue.java:63)
	at org.jboss.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:186)
	at com.sun.facelets.el.TagValueExpression.getValue(TagValueExpression.java:71)
	at javax.faces.component.UIOutput.getValue(UIOutput.java:173)
	at com.sun.faces.renderkit.html_basic.HtmlBasicInputRenderer.getValue(HtmlBasicInputRenderer.java:189)
	at com.sun.faces.renderkit.html_basic.HtmlBasicRenderer.getCurrentValue(HtmlBasicRenderer.java:320)
	at com.sun.faces.renderkit.html_basic.HtmlBasicRenderer.encodeEnd(HtmlBasicRenderer.java:200)
	at javax.faces.component.UIComponentBase.encodeEnd(UIComponentBase.java:833)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:896)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:892)
	at com.sun.facelets.FaceletViewHandler.renderView(FaceletViewHandler.java:578)
	at org.ajax4jsf.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:100)
	at org.ajax4jsf.application.AjaxViewHandler.renderView(AjaxViewHandler.java:176)
	at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:106)
	at com.sun.faces.lifecycle.LifecycleImpl.phase(LifecycleImpl.java:251)
	at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:144)
	at javax.faces.webapp.FacesServlet.service(FacesServlet.java:245)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
	at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:742)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:484)
	at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:409)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:337)
	at org.tuckey.web.filters.urlrewrite.RewrittenUrl.doRewrite(RewrittenUrl.java:176)
	at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:728)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:83)
	at org.jboss.seam.web.IdentityFilter.doFilter(IdentityFilter.java:40)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:73)
	at edu.mit.broad.logging.LoggingFilter.doFilter(LoggingFilter.java:28)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.web.LoggingFilter.doFilter(LoggingFilter.java:58)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:73)
	at org.jboss.seam.web.ExceptionFilter.doFilter(ExceptionFilter.java:64)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.web.RedirectFilter.doFilter(RedirectFilter.java:45)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.ajax4jsf.webapp.BaseXMLFilter.doXmlFilter(BaseXMLFilter.java:178)
	at org.ajax4jsf.webapp.BaseFilter.handleRequest(BaseFilter.java:290)
	at org.ajax4jsf.webapp.BaseFilter.processUploadsAndHandleRequest(BaseFilter.java:388)
	at org.ajax4jsf.webapp.BaseFilter.doFilter(BaseFilter.java:515)
	at org.jboss.seam.web.Ajax4jsfFilter.doFilter(Ajax4jsfFilter.java:56)
	at edu.mit.broad.components.Ajax4jsfFilter.doFilter(Ajax4jsfFilter.java:31)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at edu.mit.broad.jsf.servlet.DownloadFilter.doFilter(DownloadFilter.java:364)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.servlet.SeamFilter.doFilter(SeamFilter.java:158)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:110)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:492)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:165)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:104)
	at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:1025)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:451)
	at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1201)
	at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:654)
	at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:317)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
	at java.lang.Thread.run(Thread.java:748)

+ Component Tree

<AjaxViewRoot id="_viewRoot" immediate="false" locale="en" renderKitId="HTML_BASIC" renderRegionOnly="false" rendered="true" selfRendered="false" submitted="false" transient="false" viewId="/pages/whyregister.xhtml">
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd" >
<html xmlns="http://www.w3.org/1999/xhtml">
<head profile="http://www.w3.org/2005/10/profile"> <meta http-equiv="X-UA-Compatible" content="IE=EmulateIE8"/> <meta name="robots" content="noindex, nofollow, noarchive, nosnippet"/> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"/> <title>
<HtmlOutputText escape="true" id="j_id3" rendered="true" transient="false" value="TCGA Copy Number Portal"/>
</title>
<Stylesheet filtered="false" id="j_id5" inline="false" path="/brandable/css/jquery.dataTables.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id6" inline="false" path="/brandable/css/jquery-ui.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id7" inline="false" path="/brandable/css/portal_style.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id8" inline="false" path="/brandable/css/portal_custom.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id9" inline="false" path="/brandable/css/component.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id10" inline="false" path="/brandable/css/component_custom.css" rendered="true" transient="false"/>
<link rel="shortcut icon" href="#{facesContext.externalContext.requestContextPath}/brandable/images/favicon.ico" type="image/ico"/> <link rel="icon" href="#{facesContext.externalContext.requestContextPath}/brandable/images/favicon.ico" type="image/png"/> <script src="#{facesContext.externalContext.requestContextPath}/js/prototypeLoader.js" type="text/javascript" charset="utf-8"/> <script type="text/javascript" charset="utf-8">loadPrototype("#{facesContext.externalContext.requestContextPath}/js/prototype.js");</script>
<script src="#{facesContext.externalContext.requestContextPath}/js/utilities.js" type="text/javascript" charset="utf-8"/>
</head>
<body> <div id="BG">
<div id="Header" style="margin-top: 0px;">
<HtmlLink action=" disabled="false" id="HeaderLeft" immediate="false" includePageParams="true" propagation="none" rendered="true" transient="false" view="/pages/home.xhtml">
<div id="HeaderLeftText"> <b>
<HtmlOutputText escape="false" id="j_id17" rendered="true" transient="false" value="TCGA Copy Number Portal"/>
</b> </div>
</HtmlLink>
<div id="HeaderRight">
<HtmlDiv id="logIn" rendered="true" transient="false">
<HtmlForm enctype="application/x-www-form-urlencoded" id="j_id20" prependId="true" rendered="true" submitted="false" transient="false">
<table cellpadding="3" cellspacing="0" border="0"> <tr> <td align="right" style="white-space:nowrap;">
<HtmlOutputLabel escape="true" id="j_id22" rendered="true" transient="false" value="Username "/>
<HtmlInputText disabled="false" id="j_id23" immediate="false" label="Username" localValueSet="false" maxlength="25" readonly="false" rendered="true" required="true" size="8" style="font-family:Arial;" styleClass="logIn" transient="false" valid="true"/>
<br/>
<HtmlOutputLabel escape="true" id="j_id25" rendered="true" transient="false" value="Password "/>
<HtmlInputSecret disabled="false" id="j_id26" immediate="false" label="Password" localValueSet="false" maxlength="25" readonly="false" redisplay="false" rendered="true" required="true" size="8" style="font-family:Arial;" styleClass="logIn" transient="false" valid="true"/>
</td> <td>
<HtmlCommandButton action="#{identity.login}" actionExpression="#{identity.login}" disabled="false" id="j_id28" image="/brandable/images/sign_in.gif" immediate="false" readonly="false" rendered="true" transient="false" type="submit"/>
<br/>
<HtmlLink action="/pages/forgotPassword.xhtml" actionExpression="/pages/forgotPassword.xhtml" disabled="false" id="forgotButton" immediate="false" includePageParams="true" propagation="none" rendered="true" style="line-height:12px;font-size: 11px;" transient="false">
Forgot<br/>Password?
</HtmlLink>
</td> </tr> <tr> <td colspan="2" class="regInfo">
<HtmlLink action=" disabled="false" id="j_id32" immediate="false" includePageParams="true" propagation="default" rendered="true" style="font-size: 11px;" transient="false" value="Register" view="/pages/register.xhtml"/>
   
<HtmlLink action=" disabled="false" id="j_id34" immediate="false" includePageParams="true" propagation="default" rendered="true" style="font-size: 11px;" transient="false" value="Why Register?" view="/pages/whyregister.xhtml"/>
<a href="#"/></td> </tr> </table>
</HtmlForm>
</HtmlDiv>
<HtmlDiv id="logOut" rendered="false" transient="false">
<div id="userName">
<HtmlOutputText escape="true" id="j_id37" rendered="true" transient="false"/>
</div> <div id="signOut">
<HtmlLink action="#{identity.logout}" actionExpression="#{identity.logout}" disabled="false" id="j_id39" immediate="false" includePageParams="true" propagation="none" rendered="true" transient="false"/>
</div>
<HtmlAjaxRegion id="pollingRegion" immediate="false" renderRegionOnly="false" rendered="true" selfRendered="false" submitted="false" transient="false">
<HtmlForm enctype="application/x-www-form-urlencoded" id="j_id41" prependId="true" rendered="true" submitted="false" transient="false">
<AjaxPoll ajaxSingle="false" bypassUpdates="false" enabled="false" eventsQueue="myShelfPoll" id="poll" ignoreDupResponses="true" immediate="true" interval="4000" limitToList="false" rendered="true" requestDelay="-2147483648" submitted="false" timeout="-2147483648" transient="false"/>
</HtmlForm>
</HtmlAjaxRegion>
<HtmlDiv id="myShelfDataWrap" rendered="true" transient="false">
<div id="myShelfData">
<HtmlLink action="/pages/myShelf.xhtml" actionExpression="/pages/myShelf.xhtml" disabled="false" id="myShelfDataLink" immediate="false" includePageParams="true" propagation="begin" rendered="true" styleClass="myShelfData" transient="false"/>
<div id="#{(activeAnalysesForUserOnUserShelf.size()>0) ? 'myShelfStatusRun' : 'myShelfStatusComplete'}"> <div id="myShelfStatus1">#{(activeAnalysesForUserOnUserShelf.size()>0) ? activeAnalysesForUserOnUserShelf.size() : '  '}</div> <div id="myShelfStatus2">#{(analysesForUserOnUserShelf.size()>0) ? analysesForUserOnUserShelf.size() : '  '}</div> </div> </div>
</HtmlDiv>
</HtmlDiv>
</div> </div> <div id="Navigation"> <div id="History"> <div id="HistoryText"> </div> </div> <div id="spacer"> </div>
<div id="MainMenuContainer"> <div class="MainMenu">
<HtmlLink action=" disabled="false" id="home" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="HOME" view="/pages/home.xhtml"/>
</div> <div class="MainMenu">
<HtmlLink action=" disabled="false" id="about" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="ABOUT" view="/pages/about.xhtml"/>
</div> <div class="MainMenu">
<HtmlLink action=" disabled="false" id="contact" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="CONTACT" view="/pages/support/esupport.xhtml"/>
</div> <div class="MainMenu">
<HtmlPanelGroup id="j_id49" rendered="false" transient="false">
<HtmlLink action=" disabled="false" id="curator" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="CURATOR" view="/pages/curator/home.xhtml"/>
</HtmlPanelGroup>
</div> <div class="MainMenu">
<HtmlPanelGroup id="j_id51" rendered="false" transient="false">
<HtmlLink action=" disabled="false" id="admin" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="ADMIN" view="/pages/admin/home.xhtml"/>
</HtmlPanelGroup>
</div> </div>
<div id="SimpleSearch">
<HtmlForm enctype="application/x-www-form-urlencoded" id="j_id54" prependId="true" rendered="true" submitted="false" transient="false">
<HtmlOutputText escape="true" id="j_id55" rendered="false" transient="false">
<HtmlCommandButton action="#{searchAction.search}" actionExpression="#{searchAction.search}" disabled="false" id="j_id56" image="/brandable/images/searchBtn.gif" immediate="false" readonly="false" rendered="true" transient="false" type="submit"/>
<HtmlInputText disabled="false" id="searchText" immediate="false" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true"/>
</HtmlOutputText>
</HtmlForm>
</div> </div>
<HtmlDiv id="globalMessages" rendered="true" transient="false">
<HtmlMessages errorStyle="font-weight:bold; color:#880000;" globalOnly="true" id="j_id58" layout="table" rendered="true" showDetail="false" showSummary="true" styleClass="Warning" tooltip="false" transient="false"/>
</HtmlDiv>
<div id="Content"> <div id="ContentTop"> <table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr> <td width="40px" class="ContentTopLeft"/> <td class="ContentTopCenter">
<h1>Why Register?</h1>
</td> <td width="40px" class="ContentTopRight"/> </tr> </table> </div> <div id="ContentMiddle"> <table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr> <td width="16px" style="width: 16px !important;" class="ContentMiddleLeft">
<HtmlGraphicImage height="0px" id="j_id62" ismap="false" rendered="true" style="border-style:none;" transient="false" url="/brandable/images/contentBottomCenter.gif" value="/brandable/images/contentBottomCenter.gif" width="16px"/>
</td> <td bgcolor="#fff">
<br/> <h3>1. Download Datasets</h3> <p>Only registered users can download datasets. All users can view and filter datasets.</p> <h3>2. IGV (Integrative Genomics Viewer)</h3> <p>The portal displays copy number and gene expression data in IGV (Integrative Genomics Viewer), a high-performance visualization tool for exploring genomic data. Only registered users have access to IGV. </p> <h3>3. My Shelf</h3> <p>My Shelf provides a place for the user to store analyses results and paths to analyses tools. Only registered users have acccess to My Shelf pages.</p> <h3>4. Samplesets</h3> <p>All users can explore, create, and analyze customized samplesets. Only registered users can save customized samplesets to My Shelf.</p> <p>
<HtmlLink action=" disabled="false" id="j_id65" immediate="false" includePageParams="true" propagation="default" rendered="true" transient="false" value="Register" view="/pages/register.xhtml"/>
</p>
</td> <td width="16px" style="width: 16px !important;" class="ContentMiddleRight">
<HtmlGraphicImage height="0px" id="j_id68" ismap="false" rendered="true" style="border-style:none;" transient="false" url="/brandable/images/contentBottomCenter.gif" value="/brandable/images/contentBottomCenter.gif" width="0px"/>
</td> </tr> </table> </div> <div id="ContentBottom"> <table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr> <td width="40px" height="62px" class="ContentBottomLeft"/> <td class="ContentBottomCenter">
<HtmlGraphicImage height="0px" id="j_id70" ismap="false" rendered="true" style="border-style:none;" transient="false" url="/brandable/images/contentBottomCenter.gif" value="/brandable/images/contentBottomCenter.gif" width="0px"/>
</td> <td width="40px" height="62px" class="ContentBottomRight"> </td> </tr> </table> </div> </div> <div id="Footer"> <center><br/>
<HtmlOutputText escape="false" id="j_id72" rendered="true" transient="false" value="©2010-2026 The Broad Institute"/>
</center> </div> </div> </body>
</html>
</AjaxViewRoot>

+ Scoped Variables

Request Parameters
NameValue
cid181632
Request Attributes
NameValue
ajaxContextorg.ajax4jsf.context.AjaxContextImpl@66c5e894
loggingContextEventListeneredu.mit.broad.logging.LoggingContextEventListener@60ce2952
loginBeanedu.mit.broad.jsf.LoginBean@7f3b3a17
msgcom.sun.facelets.tag.jsf.core.LoadBundleHandler$ResourceBundleMap@614144f5
uiBeanedu.mit.broad.jsf.UiBean@28898101
Session Attributes
NameValue
breadcrumbsedu.mit.broad.seam.BreadCrumbBean@399cb9fb
registeredu.mit.broad.jsf.RegisterBean@1f51c75d
termsOfAccessBeanedu.mit.broad.jsf.TermsOfAccessBean@204a4765
Application Attributes
NameValue
brandtcga
downloadFilteredu.mit.broad.jsf.servlet.DownloadFilter@4cc0731e
envedu.mit.broad.config.PortalEnvironment@3e85e3e5
filePropertiesManageredu.mit.broad.util.FilePropertiesManager@51afa9b1
fileSystemUtiledu.mit.broad.util.FileSystemUtil@1e387819
footeredu.mit.broad.datamodel.admin.ProjectInfoItem@2550a431
loggingFilteredu.mit.broad.logging.LoggingFilter@f333af0
messageProvideredu.mit.broad.jsf.MessageProvider@252199b9
portalBuildedu.mit.broad.config.PortalBuildProperties@6ef684ee
portalDatabaseorg.jboss.seam.persistence.EntityManagerFactory@1db2d5cf
propertiesManageredu.mit.broad.util.PropertiesManager@308b8994
uiHelperedu.mit.broad.seam.SeamUIHelper@3b9c3ee7
Aug 22, 2026 6:44:01 PM - Generated by Facelets