Nucleotide Global Alignment

Description

Query:
TRCN0000465631
Subject:
XM_011248220.2
Aligned Length:
2696
Identities:
2387
Gaps:
4

Alignment

Query    1  ATGCGTAAAGGGGTGCTGAAGGACCCAGAGATTGCCGATCTATTCTACAAAGATGATCCTGAGGAACTTTTTAT  74
            |||||||||||||..||||||||||||||||||||.|||||.||||.|||.|||||.||.||.||.||||||||
Sbjct    1  ATGCGTAAAGGGGCACTGAAGGACCCAGAGATTGCTGATCTGTTCTTCAAGGATGACCCCGAAGAGCTTTTTAT  74

Query   75  TGGTTTGCATGAAATTGGACATGGAAGTTTTGGAGCAGTTTATTTTGCTACAAATGCTCACACCAGTGAGGTGG  148
            .|.|||||||||||||||||||||.||.||||||||.||.||.|||||.||||||||.|||||||..|||||||
Sbjct   75  CGATTTGCATGAAATTGGACATGGGAGCTTTGGAGCCGTGTACTTTGCGACAAATGCGCACACCAACGAGGTGG  148

Query  149  TGGCAATTAAGAAGATGTCCTATAGTGGGAAGCAGACCCATGAGAAATGGCAAGATATTCTTAAGGAAGTTAAA  222
            |.||..|||||||.||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||.
Sbjct  149  TCGCTGTTAAGAAAATGTCCTACAGTGGGAAGCAGACCCATGAGAAATGGCAAGATATCCTTAAGGAAGTTAAG  222

Query  223  TTTTTACGACAATTGAAGCATCCTAATACTATTGAGTACAAAGGCTGTTACTTGAAAGAACACACTGCTTGGTT  296
            |||.|.|..||..|||||||||||||.||.||.|||||||||||||||||.||.||.||.||||||||.|||||
Sbjct  223  TTTCTGCAGCAGCTGAAGCATCCTAACACCATCGAGTACAAAGGCTGTTATTTAAAGGAGCACACTGCATGGTT  296

Query  297  GGTGATGGAATATTGCTTAGGCTCAGCCTCTGATTTATTAGAAGTTCATAAAAAACCACTTCAGGAAGTGGAGA  370
            |||||||||.||.|||.||||.|||||||||||.||.||||||||||||||.||||||||||||||||||||||
Sbjct  297  GGTGATGGAGTACTGCCTAGGTTCAGCCTCTGACTTGTTAGAAGTTCATAAGAAACCACTTCAGGAAGTGGAGA  370

Query  371  TCGCTGCCATTACTCATGGAGCCTTGCATGGACTAGCCTACCTACATTCTCATGCATTGATTCATAGGGATATT  444
            |||||||.||.||.|||||.||||||||.||.||.||||||||.||.|.|||..|..|||||||.|||||.|||
Sbjct  371  TCGCTGCTATCACCCATGGTGCCTTGCAGGGGCTGGCCTACCTCCACTTTCACTCCCTGATTCACAGGGACATT  444

Query  445  AAAGCAGGAAATATTCTTCTAACAGAGCCAGGTCAGGTAAAACTAGCTGATTTTGGATCTGCTTCAATGGCTTC  518
            ||||||||.||.||.||.||.|||||||||||||||||.||.||.|||||.||.||||||||.||.||||||||
Sbjct  445  AAAGCAGGGAACATCCTCCTCACAGAGCCAGGTCAGGTGAAGCTGGCTGACTTCGGATCTGCCTCCATGGCTTC  518

Query  519  TCCTGCCAACTCCTTCGTGGGCACACCTTACTGGATGGCTCCAGAGGTGATCTTAGCTATGGATGAAGGACAGT  592
            |||.|||||||||||.|||||.||.||||||||||||||.||||||||.||||||||||||||.|||||.||||
Sbjct  519  TCCCGCCAACTCCTTTGTGGGGACTCCTTACTGGATGGCCCCAGAGGTAATCTTAGCTATGGACGAAGGGCAGT  592

Query  593  ATGATGGGAAAGTTGATATTTGGTCACTTGGCATCACTTGTATTGAATTGGCGGAACGGAAGCCGCCCCTTTTC  666
            |.||.|||||||||||.||.|||||.|||||||||||.||.||.||.||||||||.||||||||.|||||.|||
Sbjct  593  ACGACGGGAAAGTTGACATCTGGTCGCTTGGCATCACCTGCATAGAGTTGGCGGAGCGGAAGCCCCCCCTCTTC  666

Query  667  AACATGAATGCAATGAGTGCCTTATATCACATTGCCCAGAATGACTCCCCAACGTTACAGTCTAATGAATGGAC  740
            ||||||||.||.|||||.|||.|.||.|||||.||.||||||||||||||.|||.|||||||.|..||||||||
Sbjct  667  AACATGAACGCCATGAGCGCCCTCTACCACATCGCTCAGAATGACTCCCCCACGCTACAGTCCAGGGAATGGAC  740

Query  741  AGACTCCTTTAGGAGATTTGTTGATTACTGCTTGCAGAAAATACCTCAGGAAAGGCCAACATCAGCAGAACTAT  814
            |||||||||.||||||||.|||||||||||||||||.|||||||||||||||||.|||.|..|.|..||.||.|
Sbjct  741  AGACTCCTTCAGGAGATTCGTTGATTACTGCTTGCACAAAATACCTCAGGAAAGACCAGCCGCGGTGGAGCTGT  814

Query  815  TAAGGCATGACTTTGTTCGACGAGACCGGCCACTACG--TGTCCTCATTGACCTCATACAGAGGACAAAAGATG  886
            |..||||||||||..||||..|.||.|||||||  ||  .|||||||||||.||||||||||||||||||||||
Sbjct  815  TGCGGCATGACTTCATTCGGAGGGAGCGGCCAC--CGAAGGTCCTCATTGATCTCATACAGAGGACAAAAGATG  886

Query  887  CAGTTCGTGAGCTAGATAACCTACAGTACCGAAAAATGAAAAAAATACTTTTCCAAGAGACACGGAATGGACCC  960
            |.||.||.|||||.||.|||||.||||||.|.||||||||.||.||.||.|||||.|||||.|||||.||||||
Sbjct  887  CTGTCCGAGAGCTGGACAACCTGCAGTACAGGAAAATGAAGAAGATCCTCTTCCAGGAGACTCGGAACGGACCC  960

Query  961  TTGAATGAGTCACAGGAGGATGAGGAAGACAGTGAACATGGAACCAGCCTGAACAGGGAAATGGACAGCCTGGG  1034
            |||||||||||.||.||.||.||.|||||..||||.||.||||.||.|||||||.|.||..|||||||.|||||
Sbjct  961  TTGAATGAGTCGCAAGAAGAAGAAGAAGATGGTGAGCAAGGAAGCAACCTGAACCGAGAGGTGGACAGTCTGGG  1034

Query 1035  CAGCAACCATTCCATTCCAAGCATGTCCGTGAGCACAGGCAGCCAGAGCAGCAGTGTGAACAGCATGCAGGAAG  1108
            |||||.|||.||||||||.||||..||.||||||||||||||||.|||||||||||||||||||||||||||.|
Sbjct 1035  CAGCATCCACTCCATTCCCAGCACATCAGTGAGCACAGGCAGCCGGAGCAGCAGTGTGAACAGCATGCAGGAGG  1108

Query 1109  TCATGGACGAGAGCAGTTCCGAACTTGTCATGATGCACGATGACGAAAGCACAATCAATTCCAGCTCCTCCGTC  1182
            |||||||.||||||||.||.||.||.|||||||||||.||.||.|||.|||||..|||.||||||.|||||...
Sbjct 1109  TCATGGATGAGAGCAGCTCTGAGCTCGTCATGATGCAGGAGGATGAAGGCACAGCCAACTCCAGCGCCTCCACG  1182

Query 1183  GTGCATAAGAAAGATCATGTATTCATAAGGGATGAGGCGGGCCACGGCGATCCCAGGCCTGAGCCGCGGCCTAC  1256
            ||.||.|||||.||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183  GTACACAAGAAGGATCATGTATTCGTAAGGGATGAGGCGGGCCACGGCGATCCCAGGCCTGAGCCGCGGCCTAC  1256

Query 1257  CCAGTCAGTTCAGAGCCAGGCCCTCCACTACCGGAACAGAGAGCGCTTTGCCACGATCAAATCAGCATCTTTGG  1330
            |||||||||||||||||.||||||||||||.||||||.|||||||||||||||||||||||||.||.|||||||
Sbjct 1257  CCAGTCAGTTCAGAGCCGGGCCCTCCACTATCGGAACCGAGAGCGCTTTGCCACGATCAAATCCGCGTCTTTGG  1330

Query 1331  TTACACGACAGATCCATGAGCATGAGCAGGAGAACGAGTTGCGGGAACAGATGTCAGGTTATAAGCGGATGCGG  1404
            |||||||.||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1331  TTACACGGCAGATCCATGAGCATGAGCAGGAGAACGAGCTGCGGGAACAGATGTCAGGTTATAAGCGGATGCGG  1404

Query 1405  CGCCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAAGCTGAAGGCTGAGATGGACGAGCACCGCCTCAAGCT  1478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 1405  CGCCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAAGCTGAAGGCTGAGATGGATGAGCACCGCCTCAAGCT  1478

Query 1479  ACAGAAGGAGGTGGAGACGCATGCCAACAACTCGTCCATCGAGCTGGAGAAGCTGGCCAAGAAGCAAGTGGCTA  1552
            .||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479  CCAGAAGGAGGTGGAGACGCACGCCAACAACTCGTCCATCGAGCTGGAGAAGCTGGCCAAGAAGCAAGTGGCTA  1552

Query 1553  TCATAGAAAAGGAGGCAAAGGTAGCTGCAGCAGATGAGAAGAAGTTCCAGCAACAGATCTTGGCCCAGCAGAAG  1626
            .||||||||||||||||||||||||.|||||.||||||||||||||||||||.||||||.||||||||||||||
Sbjct 1553  CCATAGAAAAGGAGGCAAAGGTAGCCGCAGCGGATGAGAAGAAGTTCCAGCAGCAGATCCTGGCCCAGCAGAAG  1626

Query 1627  AAAGATTTGACAACTTTCTTAGAAAGTCAGAAGAAGCAGTATAAGATTTGTAAGGAAAAAATAAAAGAGGAAAT  1700
            ||.||.|||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||
Sbjct 1627  AAGGACTTGACAACTTTCTTAGAAAGTCAGAAGAAGCAGTACAAGATTTGTAAGGAGAAAATAAAAGAGGAAAT  1700

Query 1701  GAATGAGGACCATAGCACACCCAAGAAAGAGAAGCAAGAGCGGATCTCCAAACATAAAGAGAACTTGCAGCACA  1774
            |||.|||||||||||||||||||||||.||||||||.||||||||.||.||.||||||||.|||.|||||||||
Sbjct 1701  GAACGAGGACCATAGCACACCCAAGAAGGAGAAGCAGGAGCGGATATCGAAGCATAAAGAAAACCTGCAGCACA  1774

Query 1775  CACAGGCTGAAGAGGAAGCCCACCTTCTCACTCAACAGAGACTGTACTACGACAAAAATTGTCGTTTCTTCAAG  1848
            |.|||||.||.||||||||||||||.||||||||||||||.|||||||||||||.|||.||.||.||||||||.
Sbjct 1775  CGCAGGCCGAGGAGGAAGCCCACCTGCTCACTCAACAGAGGCTGTACTACGACAGAAACTGCCGCTTCTTCAAA  1848

Query 1849  CGGAAAATAATGATCAAGCGGCACGAGGTGGAGCAGCAGAACATTCGGGAGGAACTAAATAAAAAGAGGACCCA  1922
            ||||||||||||||||||||.|||||||||||.|||||||||||||||||||||.|||||||.|||||||||||
Sbjct 1849  CGGAAAATAATGATCAAGCGCCACGAGGTGGAACAGCAGAACATTCGGGAGGAATTAAATAAGAAGAGGACCCA  1922

Query 1923  GAAGGAGATGGAGCATGCCATGCTAATCCGGCACGACGAGTCCACCCGAGAGCTAGAGTACAGGCAGCTGCACA  1996
            ||||||.||||||||.||||||||.||||||||.||.||.||||||||||||||.|||||||||||||||||||
Sbjct 1923  GAAGGAAATGGAGCACGCCATGCTGATCCGGCATGATGAATCCACCCGAGAGCTGGAGTACAGGCAGCTGCACA  1996

Query 1997  CGTTACAGAAGCTACGCATGGATCTGATCCGTTTACAGCACCAGACGGAACTGGAAAACCAGCTGGAGTACAAT  2070
            |..|.||||||||.|||||||||||||||||..|.||||||||||||||||||||.||||||||||||||||||
Sbjct 1997  CCCTGCAGAAGCTCCGCATGGATCTGATCCGGCTGCAGCACCAGACGGAACTGGAGAACCAGCTGGAGTACAAT  2070

Query 2071  AAGAGGCGAGAAAGAGAACTGCACAGAAAGCATGTCATGGAACTTCGGCAACAGCCAAAAAACTTAAAGGCCAT  2144
            ||||||||.||..|.||.||||||.|.|||||.||||||||.||||||||||||||.|||||||||||||||||
Sbjct 2071  AAGAGGCGGGAGCGGGAGCTGCACCGGAAGCACGTCATGGAGCTTCGGCAACAGCCGAAAAACTTAAAGGCCAT  2144

Query 2145  GGAAATGCAAATTAAAAAACAGTTTCAGGACACTTGCAAAGTACAGACCAAACAGTATAAAGCACTCAAGAATC  2218
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||
Sbjct 2145  GGAAATGCAAATTAAAAAACAGTTTCAGGACACTTGCAAAGTACAGACCAAACAGTACAAAGCCCTCAAAAATC  2218

Query 2219  ACCAGTTGGAAGTTACTCCAAAGAATGAGCACAAAACAATCTTAAAGACACTGAAAGATGAGCAGACAAGAAAA  2292
            |||||||||||||.|||||||||||||||||||||.|||||.|||||||||||||.||.||||||||.||.||.
Sbjct 2219  ACCAGTTGGAAGTCACTCCAAAGAATGAGCACAAAGCAATCCTAAAGACACTGAAGGACGAGCAGACGAGGAAG  2292

Query 2293  CTTGCCATTTTGGCAGAGCAGTATGAACAGAGTATAAATGAAATGATGGCCTCTCAAGCGTTACGGCTAGATGA  2366
            ||.|||||||||||.|||||||||||||||||||||||.||.|||||||||||||||||||||||||||||.||
Sbjct 2293  CTGGCCATTTTGGCCGAGCAGTATGAACAGAGTATAAACGAGATGATGGCCTCTCAAGCGTTACGGCTAGACGA  2366

Query 2367  GGCTCAAGAAGCAGAATGCCAGGCCTTGAGGCTACAGCTCCAGCAGGAAATGGAGCTGCTCAACGCCTACCAGA  2440
            |||.|||||.|||||.||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||
Sbjct 2367  GGCACAAGAGGCAGAGTGCCAGGCCTTGAGACTACAGCTCCAGCAGGAGATGGAGCTGCTCAACGCCTACCAGA  2440

Query 2441  GCAAAATCAAGATGCAAACAGAGGCACAACATGAACGTGAGCTCCAGAAGCTAGAGCAGAGAGTGTCTCTGCGC  2514
            |||||||||||||||||||.|||||.||.||.||.||.|||||.|||||||||||||||||.|||||.||||||
Sbjct 2441  GCAAAATCAAGATGCAAACGGAGGCCCAGCACGAGCGCGAGCTACAGAAGCTAGAGCAGAGGGTGTCCCTGCGC  2514

Query 2515  AGAGCACACCTTGAGCAGAAGATTGAAGAGGAGCTGGCTGCCCTTCAGAAGGAACGCAGCGAGAGAATAAAGAA  2588
            |||||.||.|||||||||||||||||||||||||||||||||||.||||||||||||||.|||||.||.||||.
Sbjct 2515  AGAGCGCATCTTGAGCAGAAGATTGAAGAGGAGCTGGCTGCCCTGCAGAAGGAACGCAGTGAGAGGATCAAGAC  2588

Query 2589  CCTATTGGAAAGGCAAGAGCGAGAGATTGAAACTTTTGACATGGAGAGCCTCAGAATGGGATTTGGGAATTTGG  2662
            .||..||||.||.|||||||||||||..||.|||||||||||||||||||||||||||||.|||||||||||||
Sbjct 2589  TCTCCTGGAGAGACAAGAGCGAGAGACCGAGACTTTTGACATGGAGAGCCTCAGAATGGGCTTTGGGAATTTGG  2662

Query 2663  TTACATTAGATTTTCCTAAGGAGGACTACAGA  2694
            |.||||||||||||||||||||||||||.|||
Sbjct 2663  TGACATTAGATTTTCCTAAGGAGGACTATAGA  2694

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