Nucleotide Global Alignment

Description

Query:
TRCN0000467269
Subject:
NM_001284523.1
Aligned Length:
2172
Identities:
1000
Gaps:
1062

Alignment

Query    1  ATGTTGCTTTTCGTGGAGCAGGTAGCATCTAAAGGAACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT  74
            ||||||||.|||||.||||||||..||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTTGCTCTTCGTTGAGCAGGTGACATCTAAAGGCACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAAT  74

Query   75  TGCTCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGCTCTTGGCATGAAATAGCAGCTACAT  148
            |.||.||||||||.|.||||.|         ||||.||.|||||||..||||||||||||||..|||||.||||
Sbjct   75  TCCTTCTGGAAATCCGGATGGC---------ACTCCTGTAACTGAACCCTCTTGGCATGAAACTGCAGCCACAT  139

Query  149  CAGGTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAAAGAATATGAAGTAATGTATTCTTCA  222
            |.||..||||.||||||||..||.||||.||.|||||||||||.|||||.|||||||||||||||||||||.||
Sbjct  140  CTGGATCTCACCCTGAGGGCCATACAGAACTTTCAGAAGATATGTGTAAGGAATATGAAGTAATGTATTCTCCA  213

Query  223  TCTTGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCT  296
            |||||||||||||||||.||||||.|||...|||||||.|||.|||||||.|||||.||||||||.|||||.||
Sbjct  214  TCTTGTGAAACCACAAGGAATACTGCAGATGTTGAAGAGTCAGCTGATGGAATGATCTTAGGACCGGAAGACCT  287

Query  297  GAGTTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGA  370
            ||||||||||.|.|||||||||||.||||||||||.|||||||.|||||||||||||..|||||||||||||||
Sbjct  288  GAGTTACCAACTCTATGATGTTTCTGGAGAAAGCAGTTCAGCAATTTCTACAGAAGATTTAAAAGAATGTCTGA  361

Query  371  AGAAACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGT  444
            |.||||||||.|||||||||||.||||||||||||||.||||||||.|||||||||||||||||||||||||||
Sbjct  362  AAAAACAATTGGAATTCTGTTTCTCACGAGAAAATTTATCAAAGGACCTTTACTTGATATCTCAAATGGATAGT  435

Query  445  GATCAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAAT  518
            |||||||||.|||||||.|||||.||||||||||||||||||||.|||||.|||||||||.|..|.|||.||||
Sbjct  436  GATCAGTTCGTCCCAATATGGACGGTTGCCAACATGGAAGAAATTAAAAAATTGACTACAAATACAGATTTAAT  509

Query  519  TCTTGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGC  592
            |||||||||.||.||||||||.||.|||||||||||||||||||||||.||.||.|||||||||||||||||||
Sbjct  510  TCTTGAAGTATTGAGATCTTCCCCTATGGTACAAGTTGATGAGAAGGGAGAAAAGGTGAGACCAAGTCATAAGC  583

Query  593  GTTGTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAA  666
            |.||||||||.|||||.||||||||||||||.|||||.||..|||||||||||||||.||||||.||||.||||
Sbjct  584  GATGTATTGTGATTCTCAGAGAGATTCCTGAGACAACGCCTGTAGAGGAAGTGAAAGCTTTGTTTAAAAATGAA  657

Query  667  AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGA  740
            ||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||
Sbjct  658  AACTGCCCCAAAGTGATAAGCTGTGAGTTTGCGCACAACAGCAACTGGTACATCACTTTCCAGTCAGACACAGA  731

Query  741  TGCACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATAA  814
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct  732  TGCACAGCAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATCATGGCAAGGATAA  805

Query  815  AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATCTATAGTCACCCCATTCAA  888
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||.||.|||||.
Sbjct  806  AAGCCATCAATACATTTTTTGCTAAGAATGGTTATCGATTAATGGATTCTAGTATGTATACTCAACCTATTCAG  879

Query  889  ACTCAAGCACAGTATGCCTCCCCAGTCTTTATGCAGCCTGTATATAATCCTCACCAACAGTACTCGGTCTATAG  962
            ||||...|.||.|||.||||.||||||||.|||||.||.||.|||||||||   ||.||||||||.||.|||||
Sbjct  880  ACTCCTACCCAATATCCCTCACCAGTCTTCATGCAACCAGTGTATAATCCT---CAGCAGTACTCAGTGTATAG  950

Query  963  TATTGTGCCTCAGTCTTGGTCTCCAAATCCTACACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA  1036
            |.||||||||||||||||||||||||.||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  951  TCTTGTGCCTCAGTCTTGGTCTCCAAGTCCTGCACCTTACTTTGAAACACCACTGGCTCCCTTTCCCAATGGTA  1024

Query 1037  GTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGACCATT-  1109
            ||||||||||||||||||.|||.|||||||||||.|||||||||||||||||||||||||||||.|||||||| 
Sbjct 1025  GTTTTGTGAATGGCTTTAGTTCACCAGGATCTTACAAAACAAATGCTGCTGCTATGAATATGGGCCGACCATTC  1098

Query 1110  CCAAAAAATCGTG-------------------------------------------------------------  1122
            |||||||||||||                                                             
Sbjct 1099  CCAAAAAATCGTGTGAAGCCTCATTTTAGGTCATCCAGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATT  1172

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1173  GGGGGATGGACCACTGAGCAGATCTAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAACAGTAACAGGGC  1246

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1247  AGCAGGAACAAACTTATCTTCCAAAGGAGGCTCCCATTTTACAGATGGAACAGAATGGGGACTTTGGAAGAGGC  1320

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1321  AGGCGAACTCTCTTCAGAGGCCGAAGGCGAAGGGATGATGACAGGATCCCAAGACCCCAACCTGCAGCAACTGA  1394

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1395  AGCCAAGGCTCCAACTCCGAAGTTTGATTTGCTTGCTACAAATTTCCCTCCTTTACCTGGAAGCTCATCGAGAG  1468

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1469  TGCCAGATGAACTTGGTTTGGAGAACAGAATGTCTGATGTCGTTAAAGGTGTCTGCAGAGAAAAGGACAGCGAG  1542

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1543  GACGTGCGAGTTAGTTGCCCAGTGCCTGCAGAGGACGGACAGACAGACTGCACTTCTGCGCCGCTCAGCATAAG  1616

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1617  TCCTAGTCCTCCGTGTACAGCTGAGCCTCCTGTGTTAAGCACGACTCAGCAAGAGCAGGATCAGATGGAGGACT  1690

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1691  CTGCTGTTCCAAAGGACACTCTCAACCCAGTAGCTGTGCCAGTGTCTTCTCCAACTGCCACAAAGCCATCCCCG  1764

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1765  GCAAACACGGCTTCACCTTGCACTAGTAACATAAACCCACCGAGAGCTGTGGCCCTGCAGGAACCTCGAAAGTT  1838

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1839  AAGCTATGCTGAAGTGTGCCAGAAGCCTCCTAAAGAGCCATCTCCAGTTCTCGTACAGCCGCTGCGGGAACTCC  1912

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1913  GGTCTAATGCAGTATCCCCCACCAGAAATGAAGAGAACGGAGCTCCCGAGAAGCCTGTTGAGAAGCCGCATGAG  1986

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1987  AAACCAGAAACAAGGGCTAGTAAGGATCATTCTGGCTTCCGAGGCAACACTATTCCCAGGGGAGCGGCTGGAAA  2060

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2061  AATCAGGGAACAGAGACGCCAGTTCAGCCATAGGGCTACACCTCAGGGAGTGACTCGACGTAATGGGAAAGAGC  2134

Query 1123  --------------------------  1122
                                      
Sbjct 2135  AATACGTGCCACCCAGATCACCAAAG  2160

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.