Nucleotide Global Alignment

Description

Query:
TRCN0000467640
Subject:
XM_006498641.1
Aligned Length:
1853
Identities:
1449
Gaps:
226

Alignment

Query    1  ATGGGGTTTCACCATGTTGGCCAGGCTCGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCATTGGCCTCCCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACGTGCTGGGATTACAGTTGGTCCTGAGAAAAGGGTGCCAGCGATGCCTGGATCGCCTGTGGAAGTGAAGATAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGTCCAGATCCTCACCTCCCACCATGCCACCCCTCCCACCAATAAAT----------CCTGGAG-GACCGAGGC  211
                                                         ||          ||||||| |.|||    
Sbjct    1  ---------------------------------------------ATGGTGGGCGTCCCTGGAGCGGCCG----  25

Query  212  CAGTGTCCTTCACTCCTACTGCATTAAGCAATGGCATCAACCATTCTCCTCCTACCCTGAATGGTGCCCCATCA  285
                  |||    |||.||     ||||||||||||||||||||||.||||||||||||||||||||||||||.
Sbjct   26  ------CCT----TCCAAC-----TAAGCAATGGCATCAACCATTCCCCTCCTACCCTGAATGGTGCCCCATCG  84

Query  286  CCGCCACAGAGATTCAGCAATGGTCCTGCCTCCTCCACATCATCTGCACTCACAAATCAGCAATTGCCAGCCAC  359
            ||.||||||||||||||||||||.|||||||||||||||||.||.|||||.||.|||||.||..||||.||.||
Sbjct   85  CCACCACAGAGATTCAGCAATGGGCCTGCCTCCTCCACATCGTCAGCACTAACGAATCAACAGCTGCCGGCTAC  158

Query  360  TTGTGGTGCTCGACAACTCAGCAAGTTGAAACGCTTTCTTACCACTCTGCAACAGTTTGGCAATGACATCTCCC  433
            ||||||||||||.||.||||||||||||||||||||.||.|||||||||||.||||||||||||||.|||||.|
Sbjct  159  TTGTGGTGCTCGGCAGCTCAGCAAGTTGAAACGCTTCCTCACCACTCTGCAGCAGTTTGGCAATGATATCTCAC  232

Query  434  CTGAGATTGGGGAGAAGGTGCGGACTCTTGTTCTTGCACTGGTGAACTCAACAGTGACAATTGAGGAATTCCAC  507
            |||||||.||.||||||||.||||||||.|||||.||..||||||||||||||||.||||||||.||||||||.
Sbjct  233  CTGAGATCGGCGAGAAGGTTCGGACTCTCGTTCTAGCCTTGGTGAACTCAACAGTAACAATTGAAGAATTCCAT  306

Query  508  TGTAAGCTCCAAGAAGCCACAAACTTTCCCCTTCGTCCTTTTGTGATTCCATTTCTCAAGGCCAACCTGCCCCT  581
            ||.||||||||.||.||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  307  TGCAAGCTCCAGGAGGCCACAAACTTTCCTCTTCGTCCATTTGTGATTCCATTTCTCAAGGCCAACCTGCCCCT  380

Query  582  GCTGCAGCGGGAACTGCTGCACTGCGCTCGGGCGGCCAAGCAGACCCCATCCCAGTACCTGGCTCAGCACGAAC  655
            |||||||||.||||||||||||||.||.|||||.||||||||||||||.||||||||||||||.|||||.||.|
Sbjct  381  GCTGCAGCGAGAACTGCTGCACTGTGCCCGGGCTGCCAAGCAGACCCCGTCCCAGTACCTGGCCCAGCATGAGC  454

Query  656  ACCTTCTGCTCAACACAAGCATTGCATCGCCTGCTGACTCGTCAGAGTTGCTCATGGAGGTGCACGGAAATGGG  729
            ||||||||||||||||.||.||.|||||.|||||||||||.||.||..|||||||||||||.||.||||||||.
Sbjct  455  ACCTTCTGCTCAACACCAGTATCGCATCTCCTGCTGACTCTTCTGAACTGCTCATGGAGGTTCATGGAAATGGA  528

Query  730  AAGAGGCCCAGTCCAGAGAGGAGAGAAGAGAATAGTTTTGATAGAGACACAATTGCTCCTGAGCCTCCTGCCAA  803
            ||||||||||||||.||.|||||.||.|||||||.||||||.|||||.|||.||.|||||||.||.||||||||
Sbjct  529  AAGAGGCCCAGTCCGGAAAGGAGGGACGAGAATAATTTTGAAAGAGATACAGTTCCTCCTGAACCGCCTGCCAA  602

Query  804  GAGAGTATGTACCATCAGCCCTGCTCCTCGGCACAGTCCTGCTCTCACTGTGCCCCTCATGAATCCTGGGGGCC  877
            ||||||.|||||.||||||||||||||||||||||||||.||.||||||||.|||||.||||||||||||||||
Sbjct  603  GAGAGTGTGTACTATCAGCCCTGCTCCTCGGCACAGTCCCGCCCTCACTGTTCCCCTTATGAATCCTGGGGGCC  676

Query  878  AATTCCATCCTACCCCTCCACCTCTTCAGCATTACACCTTAGAGGATATTGCAACTTCTCACCTGTATCGGGAA  951
            |.|||||||||||.||.||||||||||||||.||.||..||||.||.|||||||||||||||||||||||||||
Sbjct  677  AGTTCCATCCTACTCCACCACCTCTTCAGCACTATACACTAGAAGACATTGCAACTTCTCACCTGTATCGGGAA  750

Query  952  CCCAACAAGATGCTAGAGCATCGAGAAGTTCGTGATAGACACCACAGTCTTGGTCTAAATGGAGGCTATCAAGA  1025
            ||.||||||||||||||.||.||||||||||||||.||.|||||||.||||.||||.|||||||||||||||||
Sbjct  751  CCAAACAAGATGCTAGAACACCGAGAAGTTCGTGAGAGGCACCACAATCTTAGTCTCAATGGAGGCTATCAAGA  824

Query 1026  TGAGTTGGTAGATCATCGTTTGACAGAAAGGGAATGGGCTGATGAATGGAAACATCTTGACCATGCGCTGAATT  1099
            ||||||||||||.||.|||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||||
Sbjct  825  TGAGTTGGTAGACCACCGTTTGACAGAAAGGGAGTGGGCTGATGAATGGAAACACCTTGACCATGCACTGAATT  898

Query 1100  GCATTATGGAAATGGTAGAGAAAACAAGGCGCTCTATGGCAGTTCTGCGGCGCTGTCAGGAATCAGATCGTGAA  1173
            |||||||||||||||||||||||||.||||||||.||||||||||||.||||||||||||||||.||.||||||
Sbjct  899  GCATTATGGAAATGGTAGAGAAAACTAGGCGCTCCATGGCAGTTCTGAGGCGCTGTCAGGAATCTGACCGTGAA  972

Query 1174  GAACTCAACTACTGGAAAAGACGGTACAATGAAAACACAGAGCTGAGGAAAACGGGGACCGAGTTGGTCTCCAG  1247
            |||||||||||.||||||.|.||||..||||||||.||||||.||||||||||.|||||.|||||||||||.||
Sbjct  973  GAACTCAACTATTGGAAACGGCGGTTTAATGAAAATACAGAGTTGAGGAAAACTGGGACTGAGTTGGTCTCTAG  1046

Query 1248  GCAGCACAGCCCTGGGAGTGCAGATTCTCTCAGCAATGATTCTCAGAGAGAGTTCAACAGCAGGCCAGGTACAG  1321
            |||||||||||||||||||.||||||||||||||||.|||||||||.|.||.||.|.|||.||.||||..||||
Sbjct 1047  GCAGCACAGCCCTGGGAGTACAGATTCTCTCAGCAACGATTCTCAGCGGGAATTTACCAGTAGACCAGCAACAG  1120

Query 1322  GATACGTACCTGTGGAGTTTTGGAAAAAAACAGAAGAAGCTGTGAATAAGGTGAAAATTCAGGCCATGTCAGAA  1395
            ||||.||.|||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||||||.
Sbjct 1121  GATATGTGCCTGTGGAGTTTTGGAAGAAAACAGAAGAAGCCGTGAATAAGGTGAAAATTCAGGCCATGTCAGAG  1194

Query 1396  GTACAGAAGGCCGTCGCTGAGGCAGAGCAGAAAGCCTTTGAAGTGATTGCAACAGAGAGAGCACGAATGGAGCA  1469
            |||||||||||.||.||||||||||||||.|||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 1195  GTACAGAAGGCTGTAGCTGAGGCAGAGCAAAAAGCCTTTGAAGTGATTGCAACGGAGAGAGCTCGAATGGAGCA  1268

Query 1470  AACCATAGCGGATGTCAAGCGGCAGGCCGCAGAGGATGCTTTCCTCGTCATCAATGAGCAAGAGGAGTCCACGG  1543
            .|||||||||||||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.|
Sbjct 1269  GACCATAGCGGATGTCAAACGGCAGGCTGCAGAAGATGCTTTCCTGGTCATCAATGAGCAAGAAGAGTCCACAG  1342

Query 1544  AGAACTGCTGGAACTGTGGCCGCAAAGCCAGCGAGACATGCAGTGGCTGCAATATCGCGCGATACTGTGGCTCT  1617
            ||||||||||||||||||||||.||||||||.|||||.||||||||||||||.||.||.||.|||||.|||||.
Sbjct 1343  AGAACTGCTGGAACTGTGGCCGAAAAGCCAGTGAGACGTGCAGTGGCTGCAACATTGCTCGCTACTGCGGCTCC  1416

Query 1618  TTCTGCCAGCACAAGGACTGGGAGCGGCACCACCGCCTCTGTGGTCAGAACCTGCATGGCCAGAGCCCCCACGG  1691
            |||||||||||.||||||||||||||||||||||||||||||||.||||..||.||||||||.||.||||||.|
Sbjct 1417  TTCTGCCAGCATAAGGACTGGGAGCGGCACCACCGCCTCTGTGGCCAGAGTCTACATGGCCACAGTCCCCACAG  1490

Query 1692  CCAGGGCCGGCCGCTGCTTCCTGTAGGCAGGGGCTCCTCTGCCAGGTCCGCCGACTGCAGCGTGCCCAGCCCAG  1765
            ||||.||.||||.|||||.||||.|||..||||   |||.||||||||.||.||||||||.|||||||||||||
Sbjct 1491  CCAGAGCAGGCCACTGCTCCCTGGAGGGCGGGG---CTCAGCCAGGTCTGCTGACTGCAGTGTGCCCAGCCCAG  1561

Query 1766  CCCTCGACAAGACCTCGGCAACCACATCGCGTTCCTCAACACCTGCTTCTGTGACAGCTATCGACACCAACGGA  1839
            ||||.|||||||||||.||.|||||.||.||.||||||||||||||.|||||||||||.||.||..|||||||.
Sbjct 1562  CCCTGGACAAGACCTCAGCTACCACCTCACGGTCCTCAACACCTGCCTCTGTGACAGCCATTGATGCCAACGGG  1635

Query 1840  CTC  1842
            |||
Sbjct 1636  CTC  1638

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.