Nucleotide Global Alignment
Description
- Query:
- TRCN0000467740
- Subject:
- XM_011242404.2
- Aligned Length:
- 2770
- Identities:
- 1693
- Gaps:
- 842
Alignment
Query 1 -------------------------------------------------AT-----GCGTCCAATGCGAATTTT 20
|| ||||||.|||.|||||||
Sbjct 1 ATGGCATTGTATCATCATCACTTCATCACAAGAAGAAGAAGGTTTTCGCATTTCCAGCGTCCCATGAGAATTTT 74
Query 21 TGTGAATGATGACCGCCATGTGATGGCAAAGCATTCTTCCGTTTATCCAACACAAGAGGAGCTGGAGGCAGTCC 94
||||||||||||.|||||.||||||||||||||||||||.||.||.|||||||||||||||||||||||.||.|
Sbjct 75 TGTGAATGATGATCGCCACGTGATGGCAAAGCATTCTTCAGTGTACCCAACACAAGAGGAGCTGGAGGCTGTAC 148
Query 95 AGAACATGGTGTCCCACACGGAGCGGGCGCTCAAAGCTGTGTCCGACTGGATAGACGAGCAGGAAAAGGGTAGC 168
||||||||||||||||.||.||||||||.||.||.|||||.||.||||||||.||.||||||||.||.||.|.|
Sbjct 149 AGAACATGGTGTCCCATACTGAGCGGGCCCTGAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAAC 222
Query 169 AGCGAGCAGGCAGAGTCCGATAACATGGATGTGCCCCCAGAGGACGACAGTAAAGAAGGGGCTGGGGAACAGAA 242
|||||||...|.|||.|.||.||.|||||....||||||||.||.||.||.|||||||||||||||||||||||
Sbjct 223 AGCGAGCTCTCTGAGGCAGAAAATATGGACACACCCCCAGACGATGAGAGCAAAGAAGGGGCTGGGGAACAGAA 296
Query 243 GACGGAGCACATGACCAGAACCCTGCGGGGAGTGATGCGGGTGGGCCTGGTGGCAAAGGGCCTCCTACTCAAGG 316
|.||||.||||||||.||.||||||.||||.|||||||||||.||||||||.||.|||||.||.||.|||||||
Sbjct 297 GGCGGAACACATGACTAGGACCCTGAGGGGCGTGATGCGGGTCGGCCTGGTAGCCAAGGGTCTTCTGCTCAAGG 370
Query 317 GGGACTTGGATCTGGAGCTGGTGCTGCTGTGTAAGGAGAAGCCCACAACCGCCCTCCTGGACAAGGTGGCCGAC 390
||||||||||||||||||||||.|||||.||||||||||||||||||||||||||.||||||||||||||.|||
Sbjct 371 GGGACTTGGATCTGGAGCTGGTTCTGCTCTGTAAGGAGAAGCCCACAACCGCCCTTCTGGACAAGGTGGCTGAC 444
Query 391 AACCTGGCCATCCAGCTTGCTGCTGTAACAGAAGACAAGTACGAAATACTGCAATCTGTCGACGATGCTGCGAT 464
|||||||||||||||||..||.|||||||||||||||||||.||||||||.||.|||||.||.|||||||||||
Sbjct 445 AACCTGGCCATCCAGCTCACTACTGTAACAGAAGACAAGTATGAAATACTCCAGTCTGTGGATGATGCTGCGAT 518
Query 465 TGTGATAAAAAACACAAAAGAGCCTCCATTGTCCCTGACCATCCACCTGACATCCCCTGTTGTCAGAGAAGAAA 538
||||||||||||||||||||||||.||.||||||.||||||||||.|||||.||||||||||||||||||||||
Sbjct 519 TGTGATAAAAAACACAAAAGAGCCCCCCTTGTCCTTGACCATCCATCTGACCTCCCCTGTTGTCAGAGAAGAAA 592
Query 539 TGGAGAAAGTATTAGCTGGAGAAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTT 612
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 593 TGGAGAAAGTATTAGCTGGAGAAACGCTATCAGTCAACGATCCCCCGGACGTTCTGGACAGGCAGAAATGCCTT 666
Query 613 GCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAGGCCAGAGCCAACGGGCTGAAGTCTTGTGTCATTGT 686
||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||.|||||||||||
Sbjct 667 GCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAGGCCAGAGCCAATGGACTGAAGTCATGTGTCATTGT 740
Query 687 GATCCGGGTCTTGAGGGACCTGTGCACTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGCCTCTCGAGCTCC 760
.|||||.|||.|.||||||.||||.||.||.|||||||||||||||||||||.||||.||||||||.|||||.|
Sbjct 741 CATCCGTGTCCTAAGGGACTTGTGTACCCGAGTGCCCACCTGGGGTCCCCTCAGAGGATGGCCTCTGGAGCTGC 814
Query 761 TGTGTGAGAAATCCATTGGCACGGCCAACAGACCGATGGGTGCTGGCGAGGCCCTGCGGAGAGTGCTGGAGTGC 834
||||||||||.|||||.|||||.|||||.||.||.|||||||||||.||.||||||||||||||||||||||||
Sbjct 815 TGTGTGAGAAGTCCATCGGCACTGCCAATAGGCCAATGGGTGCTGGTGAAGCCCTGCGGAGAGTGCTGGAGTGC 888
Query 835 CTGGCGTCGGGCATCGTGATGCCAGATGGTTCTGGCATTTATGACCCTTGTGAAAAAGAAGCCACTGATGCTAT 908
|||||.||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGGCATCCGGCATCGTAATGCCAGATGGTTCTGGCATTTATGACCCTTGTGAAAAAGAAGCCACTGATGCTAT 962
Query 909 TGGGCATCTAGACAGACAGCAACGGGAAGATATCACACAGAGTGCGCAGCACGCACTGCGGCTCGCTGCCTTCG 982
|||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||.||||||||.|
Sbjct 963 TGGGCATCTAGACAGACAGCAACGGGAAGATATCACACAGAGTGCGCAGCATGCTCTGCGGCTTGCTGCCTTTG 1036
Query 983 GCCAGCTCCATAAAGTCCTAGGCATGGACCCTCTGCCTTCCAAGATGCCCAAGAAACCAAAGAATGAAAACCCA 1056
|.||.|||||||||||.||.||.||||||||.|||||||||||.||||||||||||||||||||.||.|||||.
Sbjct 1037 GTCAACTCCATAAAGTACTGGGAATGGACCCCCTGCCTTCCAAAATGCCCAAGAAACCAAAGAACGAGAACCCG 1110
Query 1057 GTGGACTACACCGTTCAGATCCCACCAAGCACCACCTATGCCATTACGCCCATGAAACGCCCAATGGAGGAGGA 1130
|||||||||||.|||||.||.||.||.||||||||||||||.||.||.||||||||||||||.|||||.|||||
Sbjct 1111 GTGGACTACACTGTTCAAATTCCTCCCAGCACCACCTATGCTATCACACCCATGAAACGCCCTATGGAAGAGGA 1184
Query 1131 CGGGGAGGAGAAGTCGCCCAGCAAAAAGAAGAAGAAGATTCAGAAGAAAGAGGAGAAGGCAGAGCCCCCCCAGG 1204
.||||||||||||||.||||||||.|||||.||||||||.||||||||||||||||||||.||.||.||.||.|
Sbjct 1185 TGGGGAGGAGAAGTCTCCCAGCAAGAAGAAAAAGAAGATCCAGAAGAAAGAGGAGAAGGCTGATCCTCCTCAAG 1258
Query 1205 CTATGAATGCCCTGATGCGGTTGAACCAGCTGAAGCCAGGGCTGCAGTACAAGCTGGTGTCCCAGACTGGGCCC 1278
|||||||||||||||||.||||.||.||||||||||||||||||||||||||||||.|.||||||||.||.||.
Sbjct 1259 CTATGAATGCCCTGATGAGGTTAAATCAGCTGAAGCCAGGGCTGCAGTACAAGCTGATCTCCCAGACAGGCCCT 1332
Query 1279 GTCCATGCCCCCATCTTTACCATGTCTGTGGAGGTTGATGGCAATTCATTCGAGGCCTCTGGGCCCTCCAAAAA 1352
||.|||||.||||||||.|||||||||||||||||.||.||||.|...|||||||||||.|||||.||.|||||
Sbjct 1333 GTTCATGCTCCCATCTTCACCATGTCTGTGGAGGTAGACGGCAGTAACTTCGAGGCCTCGGGGCCATCTAAAAA 1406
Query 1353 GACGGCCAAGCTGCACGTGGCCGTTAAGGTGTTACAGGACATGGGCTTGCCGACGGGTGCTGAAGGCAGGGACT 1426
|||.||||||||.||.||
Sbjct 1407 GACTGCCAAGCTTCATGT-------------------------------------------------------- 1424
Query 1427 CGAGCAAGGGGGAGGACTCGGCTGAGGAGACCGAGGCGAAGCCAGCAGTGGTGGCCCCTGCCCCAGTGGTAGAA 1500
|
Sbjct 1425 -------------------------------------------------------------------------A 1425
Query 1501 GCTGTCTCCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAGAACGTAAAACAGCAGGGGCCGATCCT 1574
||||| || |||||||.|||||..|
Sbjct 1426 GCTGT----------------------------GA-----------------------AGCAGGGACCGATTTT 1448
Query 1575 GACAAAGCACGGCAAGAACCCAGTCATGGAGCTGAACGAGAAGAGGCGTGGGCTCAAGTACGAGCTCATCTCCG 1648
|||.|||||.|||||||||||.||.||||||||.||.||||||||.|||||.|||||.||.||||||||.||.|
Sbjct 1449 GACTAAGCATGGCAAGAACCCTGTTATGGAGCTTAATGAGAAGAGACGTGGCCTCAAATATGAGCTCATTTCTG 1522
Query 1649 AGACCGGGGGCAGCCACGACAAGCGCTTCGTCATGGAGGTCGAAGTGGATGGACAGAAGTTCCAAGGTGCTGGT 1722
||||.|||||||||||||||||..|.||.||.||||||||.||.|||||.|||||||||||.||||||||||||
Sbjct 1523 AGACGGGGGGCAGCCACGACAAAAGGTTTGTTATGGAGGTTGAGGTGGACGGACAGAAGTTTCAAGGTGCTGGT 1596
Query 1723 TCCAACAAAAAGGTGGCGAAGGCCTACGCTGCTCTTGCTGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGC 1796
||.||||||||||||||.|||||.||.|||||.|||||.||..|||||||.|||||||||||.||||||||.||
Sbjct 1597 TCAAACAAAAAGGTGGCAAAGGCTTATGCTGCACTTGCCGCATTAGAAAAACTTTTCCCTGATACCCCTCTTGC 1670
Query 1797 CCTTGATGCCAACAAAAAGAAGAGAGCCCCAGTACCCGTCAGAGGGGGACCGAAATTTGCTGCTAAGCCACATA 1870
.|||||.||||||||||||||.||..||||||||||.|||.||||.|||||.|||||||||||.||||||||.|
Sbjct 1671 TCTTGAAGCCAACAAAAAGAAAAGGACCCCAGTACCTGTCCGAGGTGGACCCAAATTTGCTGCCAAGCCACACA 1744
Query 1871 ACCCTGGCTTCGGCATGGGAGGCCCCATGCACAACGAAGTGCCCCCACCCCCCAACCTTCGAGGGCGGGGAAGA 1944
|||||||.||.||||||||||||||||||||.||.||||||||.|||||.||.|||.|.|||||.|||||..||
Sbjct 1745 ACCCTGGTTTTGGCATGGGAGGCCCCATGCATAATGAAGTGCCGCCACCTCCTAACATCCGAGGTCGGGGCCGA 1818
Query 1945 GGCGGGAGCATCCGGGGACGAGGGCGCGGGCGAGGATTTGGTGGCGCCAACCAT---GGAGGCTACATGAATGC 2015
||.||.|.||||||.||.|||||.||.||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1819 GGAGGTAACATCCGAGGGCGAGGACGGGGGCGAGGATTTGGTGGCGCCAACCATGGAGGAGGCTACATGAATGC 1892
Query 2016 CGGTGCTGGGTATGGAAGCTATGGGTACGGAGGCAACTCTGCGACAGCAGGCTACAGTGACTTTTTCACAG-AC 2088
.||||||||.||||||||||||||||||.|..||||.||.||.|||||||||||||||.|.||.| |||| |.
Sbjct 1893 TGGTGCTGGATATGGAAGCTATGGGTACAGCAGCAATTCGGCCACAGCAGGCTACAGTCAGTTCT--ACAGCAA 1964
Query 2089 TGCTACGGCTATCATGATTTTGGGTCTTCC-------------------------------------------- 2118
|| .|.||| |||.||||..|.||
Sbjct 1965 TG-GAGGGC-------ATTCTGGGAATGCCGGTGGTGGAGGCAGCGGGGGAGGTGGTGGCTCATCCAGCTACAG 2030
Query 2119 -------------------------------------------------------------------------- 2118
Sbjct 2031 CTCCTACTACCAAGGAGACAGCTACAACTCACCAGTACCCCCGAAGCATGCTGGGAAGAAGCCGCTGCATGGGG 2104
Query 2119 -------------------------------------------------------------------------- 2118
Sbjct 2105 GCCAGCAGAAAGCCTCCTACAGCTCGGGCTACCAGTCCCACCAGGGCCAGCAGCAACCTTACAACCAGAGCCAG 2178
Query 2119 -------------------------------------------------------------------------- 2118
Sbjct 2179 TACAGCAGCTACGGCACGCCACAGGGCAAGCAGAAAGGCTATGGCCATGGGCAGGGCAGCTACTCCTCCTACTC 2252
Query 2119 -------------------------------------------------------------------------- 2118
Sbjct 2253 CAACTCTTACAACTCCCCAGGTGGTGGTGGGGGCTCTGACTACAGCTACGACAGCAAATTCAACTACAGTGGGA 2326
Query 2119 -------------------------------------------------------------------------- 2118
Sbjct 2327 GTGGAGGCCGGAGTGGAGGCAACAGCTATGGCTCCAGCGGGTCATCGTCCTACAACACAGGCTCACATGGAGGC 2400
Query 2119 -------------------------------------------------------------------------- 2118
Sbjct 2401 TATGGCACAGGCTCCGGAGGCAGCTCTTCATACCAAGGCAAACAAGGAGGCTACTCATCACAGTCAAACTACAG 2474
Query 2119 -------------------------------------------------------------------------- 2118
Sbjct 2475 CTCACCTGGGTCCAGCCAGAGCTACAGTGGTCCTGCCAGCTCCTACCAGTCCTCACAGGGTGGCTACAGTCGGA 2548
Query 2119 -------------------------------- 2118
Sbjct 2549 ACACAGAGCACAGCATGAACTACCAGTACAGA 2580
