Nucleotide Global Alignment

Description

Query:
TRCN0000467740
Subject:
XM_011242404.2
Aligned Length:
2770
Identities:
1693
Gaps:
842

Alignment

Query    1  -------------------------------------------------AT-----GCGTCCAATGCGAATTTT  20
                                                             ||     ||||||.|||.|||||||
Sbjct    1  ATGGCATTGTATCATCATCACTTCATCACAAGAAGAAGAAGGTTTTCGCATTTCCAGCGTCCCATGAGAATTTT  74

Query   21  TGTGAATGATGACCGCCATGTGATGGCAAAGCATTCTTCCGTTTATCCAACACAAGAGGAGCTGGAGGCAGTCC  94
            ||||||||||||.|||||.||||||||||||||||||||.||.||.|||||||||||||||||||||||.||.|
Sbjct   75  TGTGAATGATGATCGCCACGTGATGGCAAAGCATTCTTCAGTGTACCCAACACAAGAGGAGCTGGAGGCTGTAC  148

Query   95  AGAACATGGTGTCCCACACGGAGCGGGCGCTCAAAGCTGTGTCCGACTGGATAGACGAGCAGGAAAAGGGTAGC  168
            ||||||||||||||||.||.||||||||.||.||.|||||.||.||||||||.||.||||||||.||.||.|.|
Sbjct  149  AGAACATGGTGTCCCATACTGAGCGGGCCCTGAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAAC  222

Query  169  AGCGAGCAGGCAGAGTCCGATAACATGGATGTGCCCCCAGAGGACGACAGTAAAGAAGGGGCTGGGGAACAGAA  242
            |||||||...|.|||.|.||.||.|||||....||||||||.||.||.||.|||||||||||||||||||||||
Sbjct  223  AGCGAGCTCTCTGAGGCAGAAAATATGGACACACCCCCAGACGATGAGAGCAAAGAAGGGGCTGGGGAACAGAA  296

Query  243  GACGGAGCACATGACCAGAACCCTGCGGGGAGTGATGCGGGTGGGCCTGGTGGCAAAGGGCCTCCTACTCAAGG  316
            |.||||.||||||||.||.||||||.||||.|||||||||||.||||||||.||.|||||.||.||.|||||||
Sbjct  297  GGCGGAACACATGACTAGGACCCTGAGGGGCGTGATGCGGGTCGGCCTGGTAGCCAAGGGTCTTCTGCTCAAGG  370

Query  317  GGGACTTGGATCTGGAGCTGGTGCTGCTGTGTAAGGAGAAGCCCACAACCGCCCTCCTGGACAAGGTGGCCGAC  390
            ||||||||||||||||||||||.|||||.||||||||||||||||||||||||||.||||||||||||||.|||
Sbjct  371  GGGACTTGGATCTGGAGCTGGTTCTGCTCTGTAAGGAGAAGCCCACAACCGCCCTTCTGGACAAGGTGGCTGAC  444

Query  391  AACCTGGCCATCCAGCTTGCTGCTGTAACAGAAGACAAGTACGAAATACTGCAATCTGTCGACGATGCTGCGAT  464
            |||||||||||||||||..||.|||||||||||||||||||.||||||||.||.|||||.||.|||||||||||
Sbjct  445  AACCTGGCCATCCAGCTCACTACTGTAACAGAAGACAAGTATGAAATACTCCAGTCTGTGGATGATGCTGCGAT  518

Query  465  TGTGATAAAAAACACAAAAGAGCCTCCATTGTCCCTGACCATCCACCTGACATCCCCTGTTGTCAGAGAAGAAA  538
            ||||||||||||||||||||||||.||.||||||.||||||||||.|||||.||||||||||||||||||||||
Sbjct  519  TGTGATAAAAAACACAAAAGAGCCCCCCTTGTCCTTGACCATCCATCTGACCTCCCCTGTTGTCAGAGAAGAAA  592

Query  539  TGGAGAAAGTATTAGCTGGAGAAACGCTATCAGTCAACGACCCCCCGGACGTTCTGGACAGGCAGAAATGCCTT  612
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct  593  TGGAGAAAGTATTAGCTGGAGAAACGCTATCAGTCAACGATCCCCCGGACGTTCTGGACAGGCAGAAATGCCTT  666

Query  613  GCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAGGCCAGAGCCAACGGGCTGAAGTCTTGTGTCATTGT  686
            ||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||.|||||||||||
Sbjct  667  GCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAGGCCAGAGCCAATGGACTGAAGTCATGTGTCATTGT  740

Query  687  GATCCGGGTCTTGAGGGACCTGTGCACTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGCCTCTCGAGCTCC  760
            .|||||.|||.|.||||||.||||.||.||.|||||||||||||||||||||.||||.||||||||.|||||.|
Sbjct  741  CATCCGTGTCCTAAGGGACTTGTGTACCCGAGTGCCCACCTGGGGTCCCCTCAGAGGATGGCCTCTGGAGCTGC  814

Query  761  TGTGTGAGAAATCCATTGGCACGGCCAACAGACCGATGGGTGCTGGCGAGGCCCTGCGGAGAGTGCTGGAGTGC  834
            ||||||||||.|||||.|||||.|||||.||.||.|||||||||||.||.||||||||||||||||||||||||
Sbjct  815  TGTGTGAGAAGTCCATCGGCACTGCCAATAGGCCAATGGGTGCTGGTGAAGCCCTGCGGAGAGTGCTGGAGTGC  888

Query  835  CTGGCGTCGGGCATCGTGATGCCAGATGGTTCTGGCATTTATGACCCTTGTGAAAAAGAAGCCACTGATGCTAT  908
            |||||.||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTGGCATCCGGCATCGTAATGCCAGATGGTTCTGGCATTTATGACCCTTGTGAAAAAGAAGCCACTGATGCTAT  962

Query  909  TGGGCATCTAGACAGACAGCAACGGGAAGATATCACACAGAGTGCGCAGCACGCACTGCGGCTCGCTGCCTTCG  982
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||.||||||||.|
Sbjct  963  TGGGCATCTAGACAGACAGCAACGGGAAGATATCACACAGAGTGCGCAGCATGCTCTGCGGCTTGCTGCCTTTG  1036

Query  983  GCCAGCTCCATAAAGTCCTAGGCATGGACCCTCTGCCTTCCAAGATGCCCAAGAAACCAAAGAATGAAAACCCA  1056
            |.||.|||||||||||.||.||.||||||||.|||||||||||.||||||||||||||||||||.||.|||||.
Sbjct 1037  GTCAACTCCATAAAGTACTGGGAATGGACCCCCTGCCTTCCAAAATGCCCAAGAAACCAAAGAACGAGAACCCG  1110

Query 1057  GTGGACTACACCGTTCAGATCCCACCAAGCACCACCTATGCCATTACGCCCATGAAACGCCCAATGGAGGAGGA  1130
            |||||||||||.|||||.||.||.||.||||||||||||||.||.||.||||||||||||||.|||||.|||||
Sbjct 1111  GTGGACTACACTGTTCAAATTCCTCCCAGCACCACCTATGCTATCACACCCATGAAACGCCCTATGGAAGAGGA  1184

Query 1131  CGGGGAGGAGAAGTCGCCCAGCAAAAAGAAGAAGAAGATTCAGAAGAAAGAGGAGAAGGCAGAGCCCCCCCAGG  1204
            .||||||||||||||.||||||||.|||||.||||||||.||||||||||||||||||||.||.||.||.||.|
Sbjct 1185  TGGGGAGGAGAAGTCTCCCAGCAAGAAGAAAAAGAAGATCCAGAAGAAAGAGGAGAAGGCTGATCCTCCTCAAG  1258

Query 1205  CTATGAATGCCCTGATGCGGTTGAACCAGCTGAAGCCAGGGCTGCAGTACAAGCTGGTGTCCCAGACTGGGCCC  1278
            |||||||||||||||||.||||.||.||||||||||||||||||||||||||||||.|.||||||||.||.||.
Sbjct 1259  CTATGAATGCCCTGATGAGGTTAAATCAGCTGAAGCCAGGGCTGCAGTACAAGCTGATCTCCCAGACAGGCCCT  1332

Query 1279  GTCCATGCCCCCATCTTTACCATGTCTGTGGAGGTTGATGGCAATTCATTCGAGGCCTCTGGGCCCTCCAAAAA  1352
            ||.|||||.||||||||.|||||||||||||||||.||.||||.|...|||||||||||.|||||.||.|||||
Sbjct 1333  GTTCATGCTCCCATCTTCACCATGTCTGTGGAGGTAGACGGCAGTAACTTCGAGGCCTCGGGGCCATCTAAAAA  1406

Query 1353  GACGGCCAAGCTGCACGTGGCCGTTAAGGTGTTACAGGACATGGGCTTGCCGACGGGTGCTGAAGGCAGGGACT  1426
            |||.||||||||.||.||                                                        
Sbjct 1407  GACTGCCAAGCTTCATGT--------------------------------------------------------  1424

Query 1427  CGAGCAAGGGGGAGGACTCGGCTGAGGAGACCGAGGCGAAGCCAGCAGTGGTGGCCCCTGCCCCAGTGGTAGAA  1500
                                                                                     |
Sbjct 1425  -------------------------------------------------------------------------A  1425

Query 1501  GCTGTCTCCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAGAACGTAAAACAGCAGGGGCCGATCCT  1574
            |||||                            ||                       |||||||.|||||..|
Sbjct 1426  GCTGT----------------------------GA-----------------------AGCAGGGACCGATTTT  1448

Query 1575  GACAAAGCACGGCAAGAACCCAGTCATGGAGCTGAACGAGAAGAGGCGTGGGCTCAAGTACGAGCTCATCTCCG  1648
            |||.|||||.|||||||||||.||.||||||||.||.||||||||.|||||.|||||.||.||||||||.||.|
Sbjct 1449  GACTAAGCATGGCAAGAACCCTGTTATGGAGCTTAATGAGAAGAGACGTGGCCTCAAATATGAGCTCATTTCTG  1522

Query 1649  AGACCGGGGGCAGCCACGACAAGCGCTTCGTCATGGAGGTCGAAGTGGATGGACAGAAGTTCCAAGGTGCTGGT  1722
            ||||.|||||||||||||||||..|.||.||.||||||||.||.|||||.|||||||||||.||||||||||||
Sbjct 1523  AGACGGGGGGCAGCCACGACAAAAGGTTTGTTATGGAGGTTGAGGTGGACGGACAGAAGTTTCAAGGTGCTGGT  1596

Query 1723  TCCAACAAAAAGGTGGCGAAGGCCTACGCTGCTCTTGCTGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGC  1796
            ||.||||||||||||||.|||||.||.|||||.|||||.||..|||||||.|||||||||||.||||||||.||
Sbjct 1597  TCAAACAAAAAGGTGGCAAAGGCTTATGCTGCACTTGCCGCATTAGAAAAACTTTTCCCTGATACCCCTCTTGC  1670

Query 1797  CCTTGATGCCAACAAAAAGAAGAGAGCCCCAGTACCCGTCAGAGGGGGACCGAAATTTGCTGCTAAGCCACATA  1870
            .|||||.||||||||||||||.||..||||||||||.|||.||||.|||||.|||||||||||.||||||||.|
Sbjct 1671  TCTTGAAGCCAACAAAAAGAAAAGGACCCCAGTACCTGTCCGAGGTGGACCCAAATTTGCTGCCAAGCCACACA  1744

Query 1871  ACCCTGGCTTCGGCATGGGAGGCCCCATGCACAACGAAGTGCCCCCACCCCCCAACCTTCGAGGGCGGGGAAGA  1944
            |||||||.||.||||||||||||||||||||.||.||||||||.|||||.||.|||.|.|||||.|||||..||
Sbjct 1745  ACCCTGGTTTTGGCATGGGAGGCCCCATGCATAATGAAGTGCCGCCACCTCCTAACATCCGAGGTCGGGGCCGA  1818

Query 1945  GGCGGGAGCATCCGGGGACGAGGGCGCGGGCGAGGATTTGGTGGCGCCAACCAT---GGAGGCTACATGAATGC  2015
            ||.||.|.||||||.||.|||||.||.|||||||||||||||||||||||||||   |||||||||||||||||
Sbjct 1819  GGAGGTAACATCCGAGGGCGAGGACGGGGGCGAGGATTTGGTGGCGCCAACCATGGAGGAGGCTACATGAATGC  1892

Query 2016  CGGTGCTGGGTATGGAAGCTATGGGTACGGAGGCAACTCTGCGACAGCAGGCTACAGTGACTTTTTCACAG-AC  2088
            .||||||||.||||||||||||||||||.|..||||.||.||.|||||||||||||||.|.||.|  |||| |.
Sbjct 1893  TGGTGCTGGATATGGAAGCTATGGGTACAGCAGCAATTCGGCCACAGCAGGCTACAGTCAGTTCT--ACAGCAA  1964

Query 2089  TGCTACGGCTATCATGATTTTGGGTCTTCC--------------------------------------------  2118
            || .|.|||       |||.||||..|.||                                            
Sbjct 1965  TG-GAGGGC-------ATTCTGGGAATGCCGGTGGTGGAGGCAGCGGGGGAGGTGGTGGCTCATCCAGCTACAG  2030

Query 2119  --------------------------------------------------------------------------  2118
                                                                                      
Sbjct 2031  CTCCTACTACCAAGGAGACAGCTACAACTCACCAGTACCCCCGAAGCATGCTGGGAAGAAGCCGCTGCATGGGG  2104

Query 2119  --------------------------------------------------------------------------  2118
                                                                                      
Sbjct 2105  GCCAGCAGAAAGCCTCCTACAGCTCGGGCTACCAGTCCCACCAGGGCCAGCAGCAACCTTACAACCAGAGCCAG  2178

Query 2119  --------------------------------------------------------------------------  2118
                                                                                      
Sbjct 2179  TACAGCAGCTACGGCACGCCACAGGGCAAGCAGAAAGGCTATGGCCATGGGCAGGGCAGCTACTCCTCCTACTC  2252

Query 2119  --------------------------------------------------------------------------  2118
                                                                                      
Sbjct 2253  CAACTCTTACAACTCCCCAGGTGGTGGTGGGGGCTCTGACTACAGCTACGACAGCAAATTCAACTACAGTGGGA  2326

Query 2119  --------------------------------------------------------------------------  2118
                                                                                      
Sbjct 2327  GTGGAGGCCGGAGTGGAGGCAACAGCTATGGCTCCAGCGGGTCATCGTCCTACAACACAGGCTCACATGGAGGC  2400

Query 2119  --------------------------------------------------------------------------  2118
                                                                                      
Sbjct 2401  TATGGCACAGGCTCCGGAGGCAGCTCTTCATACCAAGGCAAACAAGGAGGCTACTCATCACAGTCAAACTACAG  2474

Query 2119  --------------------------------------------------------------------------  2118
                                                                                      
Sbjct 2475  CTCACCTGGGTCCAGCCAGAGCTACAGTGGTCCTGCCAGCTCCTACCAGTCCTCACAGGGTGGCTACAGTCGGA  2548

Query 2119  --------------------------------  2118
                                            
Sbjct 2549  ACACAGAGCACAGCATGAACTACCAGTACAGA  2580

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