Nucleotide Global Alignment

Description

Query:
TRCN0000467805
Subject:
NR_148373.1
Aligned Length:
3370
Identities:
2820
Gaps:
547

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AATTGGCGTAGCGCTTGCTGAGCGGCGGCGGCAACCGACGTACACAAGGGGCTTGAGCGTTCTGTGGAGAGAGT  74

Query    1  -------------ATGAACTTGGGAGATGGTTTAAAGCTTGAAACTGAATTACTGGATGGAAAAACCAAGCTAA  61
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCGAGGTCAGGCCATGAACTTGGGAGATGGTTTAAAGCTTGAAACTGAATTACTGGATGGAAAAACCAAGCTAA  148

Query   62  TATTGTCTCCATATGAACATAAATCAAAAATTTCTGTGAAGATGGGAAATAAGGCCAAGATTGCAAAATGTCCT  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TATTGTCTCCATATGAACATAAATCAAAAATTTCTGTGAAGATGGGAAATAAGGCCAAGATTGCAAAATGTCCT  222

Query  136  TTAAGAACAAAAACTGGGCACATTCTAAAATCAACACAAGATACTTGTATTGGGAGTGAAAAACTTTTGCAAAA  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTAAGAACAAAAACTGGGCACATTCTAAAATCAACACAAGATACTTGTATTGGGAGTGAAAAACTTTTGCAAAA  296

Query  210  GAAGCCAGTTGGTTCAGAAACATCACAGGCAAAAGGTGAAAAAAATGGAATGACTTTTTCATCCACTAAGGATT  283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAAGCCAGTTGGTTCAGAAACATCACAGGCAAAAGGTGAAAAAAATGGAATGACTTTTTCATCCACTAAGGATT  370

Query  284  TATGTAAACAATGTATAGATAAAGACTGTCTTCATATCCAGAAAGAGATTTCACCTGCAACTCCTAATATGCAG  357
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  371  TATGTAAACAATGTATAGATAAAGACTGTCTTCATATCCAGAAAGAGATTTCACCTGCAACCCCTAATATGCAG  444

Query  358  AAGACTAGAAACACCGTAAATACATCTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATCACAGCTGAAAA  431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGACTAGAAACACCGTAAATACATCTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATCACAGCTGAAAA  518

Query  432  CATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA  505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA  592

Query  506  GATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATATTTAAACAGTATTTCTAAT  579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATATTTAAACAGTATTTCTAAT  666

Query  580  CAGCCAAAGGATGAGAACATTATGGGATTATTCAAAAAAACTGAAATGGTTTCATCTGTCCCAGCTGAAAATAA  653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CAGCCAAAGGATGAGAACATTATGGGATTATTCAAAAAAACTGAAATGGTTTCATCTGTCCCAGCTGAAAATAA  740

Query  654  ATCTGTCTTAAATGAACATCAGGAGACATCTAAACAGTGTGAGCAAAAAATTGCCATAGAGAATGAATGGAAAC  727
            ||||||||||||||||||||||||||||||||||||                     |||||||||||||||||
Sbjct  741  ATCTGTCTTAAATGAACATCAGGAGACATCTAAACA---------------------AGAGAATGAATGGAAAC  793

Query  728  CAGCTGATATATTCAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGTTGGAAGCAAAAAAAGCCCAGTGG  801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  794  CAGCTGATATATTCAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGTTGGAAGCAAAAAAAGCCCAGTGG  867

Query  802  AGGAAAGAGCTAGATGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGTTTCTGAAAAATGGAATGATCCTTG  875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  868  AGGAAAGAGCTAGATGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGTTTCTGAAAAATGGAATGATCCTTG  941

Query  876  GAAAAAATCTGAAAGTGATAAAATAATATGGGAAAAACATCAAATTCTTGACCAATCTAG--------------  935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct  942  GAAAAAATCTGAAAGTGATAAAATAATATGGGAAAAACATCAAATTCTTGACCAATCTAGGCTCTTCAAGCATT  1015

Query  936  --------------------------------------------------------------------------  935
                                                                                      
Sbjct 1016  CTATCACAGTCTCGTAGCCAGGTTATGGTGGTCCAAGCTGATGGGGCATTCACAACTTAGAGCTAGTCAGACTT  1089

Query  936  ----GGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAGAGAAAATGGATTGAAGAG  1005
                |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1090  TAGAGGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAG  1163

Query 1006  TTGAATAAGCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACA  1079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164  TTGAATAAGCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACA  1237

Query 1080  TGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCGGTCAA  1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1238  TGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCAGTCAA  1311

Query 1154  CACACAAACAACCTGAGTACTTCTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACA  1227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312  CACACAAACAACCTGAGTACTTCTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACA  1385

Query 1228  CCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGC  1301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386  CCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGC  1459

Query 1302  AAACAGTAAGAAAACAAACTTTCTCCGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACA  1375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460  AAACAGTAAGAAAACAAACTTTCTCCGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACA  1533

Query 1376  GACGACGACAAAAACAATTAGAGCAT------------------------------------------------  1401
            ||||||||||||||||||||||||||                                                
Sbjct 1534  GACGACGACAAAAACAATTAGAGCATCAGCTCTGTCACCTAGGCTGGACTTCAGTGGCACAATGTTGGATCACT  1607

Query 1402  ---------------------------------------------------------------CAGAAAGCCAT  1412
                                                                           |||||||||||
Sbjct 1608  ACAACCTCCACCTTCTGGGTTCAAGCAATTCCCATGCCTCAGCCACCCAAGTAGCTGGAATTACAGAAAGCCAT  1681

Query 1413  CACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGGAAGAACAAGAAG  1486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682  CACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGGAAGAACAAGAAG  1755

Query 1487  AGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTTAAGCAAAAACAA  1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756  AGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTTAAGCAAAAACAA  1829

Query 1561  AAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGAACTGGCACAGAG  1634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830  AAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGAACTGGCACAGAG  1903

Query 1635  ACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGATTAAAAATCTTG  1708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904  ACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGATTAAAAATCTTG  1977

Query 1709  GTGTTGATACAATACAAATGGAATATAATGCATCTAACATTTCAAATTCAAGACATGATTCTGATGAAATCAGT  1782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978  GTGTTGATACAATACAAATGGAATATAATGCATCTAACATTTCAAATTCAAGACATGATTCTGATGAAATCAGT  2051

Query 1783  GGTAAAATGAATACATATATGAATTCTACGACTTCTTCTAAGAAGGATACTGGTGTGCAAACAGATGACTTAAA  1856
            |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct 2052  GGTAAAATGAATACATATATGAATTCTACGA---CTTCTAAGAAGGATACTGGTGTGCAAACAGATGACTTAAA  2122

Query 1857  TATAGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAATGGAGAGGGACATCACAAATTGTTCATCTC  1930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123  TATAGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAATGGAGAGGGACATCACAAATTGTTCATCTC  2196

Query 1931  CTGAGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAACTCAGGATAAAGGA  2004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197  CTGAGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAACTCAGGATAAAGGA  2270

Query 2005  GCCAGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAATCAGTTCACAAGAATAGAGAAACAAACAAA  2078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2271  GCCAGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAATCAGTTCACAAGAATAGAGAAACAAACAAA  2344

Query 2079  ACACATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATAAGCCACCTAAAAGGTATATTCCAGCATCAG  2152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2345  ACACATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATAAGCCACCTAAAAGGTATATTCCAGCATCAG  2418

Query 2153  AAAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAATTGCTTCATTTG  2226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2419  AAAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAATTGCTTCATTTG  2492

Query 2227  GTAGAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCATCTCATCA  2300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2493  GTAGAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCATCTCATCA  2566

Query 2301  AGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTCATTCATTCAGCA  2374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2567  AGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTCATTCATTCAGCA  2640

Query 2375  AGGAAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAACAGAACCCAACAAACTCAAAATACATTACATTTA  2448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641  AGGAAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAACAGAACCCAACAAACTCAAAATACATTACATTTA  2714

Query 2449  CCACTAAAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGGAAGTAATCAAACAGAATTATCATCTGGGAT  2522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2715  CCACTAAAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGGAAGTAATCAAACAGAATTATCATCTGGGAT  2788

Query 2523  TTCTGAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGATCTATTACCTTGATCCCGATGCACCATTGT  2596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2789  TTCTGAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGATCTATTACCTTGATCCCGATGCACCATTGT  2862

Query 2597  CTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATTCT  2670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2863  CTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATTCT  2936

Query 2671  GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGG  2744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2937  GACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGG  3010

Query 2745  ACTTTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGAAA  2818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3011  ACTTTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGAAA  3084

Query 2819  ATCAAGAAGAGAGTTTTGGTTCTTCATTT---------------------------------------------  2847
            |||||||||||||||||||||||||||||                                             
Sbjct 3085  ATCAAGAAGAGAGTTTTGGTTCTTCATTTTAAATGTAGAAAATCAAATCCTTCACATTTGATTTGTGTCTTCCA  3158

Query 2848  --------------------------------------------------------------------------  2847
                                                                                      
Sbjct 3159  AATTATAAAATGTGCTCACTGGCTCAACTGTATTTTTCAAATAGCCTAGATTTACTTATTTTTTTAAATGCTCA  3232

Query 2848  --------------------------------------------------------------------------  2847
                                                                                      
Sbjct 3233  TTAAAAACTTGTATACTATGTAGTAAAATGCTGTACTTGTTCTATACAATAAAACAGATACTTCTTTTGTAAAA  3306

Query 2848  ----------------------------------------  2847
                                                    
Sbjct 3307  GCTTAGTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  3346

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