Nucleotide Global Alignment
Description
- Query:
- TRCN0000468708
- Subject:
- NM_001365643.1
- Aligned Length:
- 3607
- Identities:
- 2413
- Gaps:
- 974
Alignment
Query 1 ATGCGAGGTGGCAAATGCAACATGCTCTCCAGTTTGGGGTGTCTACTTCTCTGTGGAAGTATTACACTAGCCCT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGAGGTGGCAAATGCAACATGCTCTCCAGTTTGGGGTGTCTACTTCTCTGTGGAAGTATTACACTAGCCCT 74
Query 75 GGGAAATGCACAGAAATTGCCAAAAGGTAAAAGGCCAAACCTCAAAGTCCACATCAATACCACAAGTGACTCCA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GGGAAATGCACAGAAATTGCCAAAAGGTAAAAGGCCAAACCTCAAAGTCCACATCAATACCACAAGTGACTCCA 148
Query 149 TCCTCTTGAAGTTCTTGCGTCCAAGTCCAAATGTAAAGCTTGAAGGTCTTCTCCTGGGATATGGCAGCAATGTA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TCCTCTTGAAGTTCTTGCGTCCAAGTCCAAATGTAAAGCTTGAAGGTCTTCTCCTGGGATATGGCAGCAATGTA 222
Query 223 TCACCAAACCAGTACTTCCCTCTTCCCGCTGAAGGGAAATTCACAGAAGCTATAGTTGATGCAGAGCCGAAATA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCACCAAACCAGTACTTCCCTCTTCCCGCTGAAGGGAAATTCACAGAAGCTATAGTTGATGCAGAGCCGAAATA 296
Query 297 TCTGATAGTTGTGCGACCTGCTCCACCTCCAAGTCAAAAGAAGTCATGTTCAGGTAAAACTCGTTCTCGCAAAC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTGATAGTTGTGCGACCTGCTCCACCTCCAAGTCAAAAGAAGTCATGTTCAGGTAAAACTCGTTCTCGCAAAC 370
Query 371 CTCTGCAGCTGGTGGTTGGCACTCTGACACCGAGCTCAGTCTTCCTGTCCTGGGGTTTCCTCATCAACCCACAC 444
|||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCTGCAGCTGGTGGTTGGCACTCTGACACCGAGCTCGGTCTTCCTGTCCTGGGGTTTCCTCATCAACCCACAC 444
Query 445 CATGACTGGACATTGCCAAGTCACTGTCCCAATGACAGATTTTATACAATTCGCTATCGAGAAAAGGATAAAGA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CATGACTGGACATTGCCAAGTCACTGTCCCAATGACAGATTTTATACAATTCGCTATCGAGAAAAGGATAAAGA 518
Query 519 AAAGAAGTGGATTTTTCAAATCTGTCCAGCCACTGAAACAATTGTGGAAAACCTAAAGCCCAACACAGTTTATG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAAGAAGTGGATTTTTCAAATCTGTCCAGCCACTGAAACAATTGTGGAAAACCTAAAGCCCAACACAGTTTATG 592
Query 593 AATTTGGAGTGAAAGACAATGTGGAAGGTGGAATTTGGAGTAAGATTTTCAATCACAAGACTGTTGTTGGAAGT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATTTGGAGTGAAAGACAATGTGGAAGGTGGAATTTGGAGTAAGATTTTCAATCACAAGACTGTTGTTGGAAGT 666
Query 667 AAAAAAGTAAATGGGAAAATCCAAAGTACCTATGACCAAGACCACACAGTGCCAGCATATGTCCCAAGGAAACT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAAAAAGTAAATGGGAAAATCCAAAGTACCTATGACCAAGACCACACAGTGCCAGCATATGTCCCAAGGAAACT 740
Query 741 AATCCCAATAACAATCATCAAGCAAGTGATTCAGAATGTTACTCACAAGGATTCAGCTAAATCCCCAGAAAAAG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AATCCCAATAACAATCATCAAGCAAGTGATTCAGAATGTTACTCACAAGGATTCAGCTAAATCCCCAGAAAAAG 814
Query 815 CTCCACTGGGAGGAGTGATACTAGTCCACCTTATTATTCCAGGTCTTAATGAAACTACTGTAAAACTTCCTGCA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCCACTGGGAGGAGTGATACTAGTCCACCTTATTATTCCAGGTCTTAATGAAACTACTGTAAAACTTCCTGCA 888
Query 889 TCCCTAATGTTTGAGATTTCAGATGCACTCAAGACACAATTAGCTAAGAATGAAACCTTGGCATTACCTGCCGA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCCCTAATGTTTGAGATTTCAGATGCACTCAAGACACAATTAGCTAAGAATGAAACCTTGGCATTACCTGCCGA 962
Query 963 ATCTAAAACACCAGAGGTTGAAAAAATCTCAGCACGACCCACAACAGTGACTCCTGAAACAGTTCCAAGAAGCA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATCTAAAACACCAGAGGTTGAAAAAATCTCAGCACGACCCACAACAGTGACTCCTGAAACAGTTCCAAGAAGCA 1036
Query 1037 CTAAACCCACTACGTCTAGTGCATTAGATGTTTCAGAAACAACAC----------------------------- 1081
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTAAACCCACTACGTCTAGTGCATTAGATGTTTCAGAAACAACACTGGTTCTCAGCAAAAGGACCCCGGAAACA 1110
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 1111 TTGCAAACTATTCTAATACCTCAGTTTGAATTGCCACTGAGCACTCTAGCTCCAAAAAGCCTTCCAGAATTTCC 1184
Query 1082 --------------------------------------------TGGCTTCAAGTGAAAAGCCATGGATTGTGC 1111
||||||||||||||||||||||||||||||
Sbjct 1185 TGAGGCAAAAACACCCTTCCCTTTTGAGAAACCTAGGGGCACATTGGCTTCAAGTGAAAAGCCATGGATTGTGC 1258
Query 1112 CTACAGCTAAAATATCTGAAGATTCCAAAGTTCTGCAGCCTCAAACTGCAACTTATGATGTTTTCTCAAGCCCT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTACAGCTAAAATATCTGAAGATTCCAAAGTTCTGCAGCCTCAAACTGCAACTTATGATGTTTTCTCAAGCCCT 1332
Query 1186 ACAACATCAGATGAGCCTGAGATATCAGATTCCTACACAGCAACAAGTGATCGTATTCTGGATTCTATCCCACC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ACAACATCAGATGAGCCTGAGATATCAGATTCCTACACAGCAACAAGTGATCGTATTCTGGATTCTATCCCACC 1406
Query 1260 TAAAACTTCTAGAACTCTTGAACAGCCAAGGGCAACACTGGCTCCAAGTGAAACACCATTTGTTCCTCAAAAAC 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TAAAACTTCTAGAACTCTTGAACAGCCAAGGGCAACACTGGCTCCAAGTGAAACACCATTTGTTCCTCAAAAAC 1480
Query 1334 TGGAAATCTTTACCAGTCCAGAAATGCAGCCTACGACACCTGCTCCCCAGCAAACTACATCTATCCCTTCTACA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGGAAATCTTTACCAGTCCAGAAATGCAGCCTACGACACCTGCTCCCCAGCAAACTACATCTATCCCTTCTACA 1554
Query 1408 CCTAAACGACGCCCCCGGCCCAAACCGCCAAGAACCAAACCTGAAAGAACCACAAGTGCCGGAACAATTACACC 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCTAAACGACGCCCCCGGCCCAAACCGCCAAGAACCAAACCTGAAAGAACCACAAGTGCCGGAACAATTACACC 1628
Query 1482 TAAAATTTCTAAAAGCCCTGAACCTACATGGACAACACCGGCTCCCGGTAAAACACAATTTATTTCTCTGAAAC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TAAAATTTCTAAAAGCCCTGAACCTACATGGACAACACCGGCTCCCGGTAAAACACAATTTATTTCTCTGAAAC 1702
Query 1556 CTAAAATCCCTCTCAGCCCAGAAGTGACACACACCAAACCTGCTCCCAAG-----CAGACACCACGTGC----- 1619
|||||||||||||||||||||||||||||||||||||||||| |||.|| |||||.|.|| |||
Sbjct 1703 CTAAAATCCCTCTCAGCCCAGAAGTGACACACACCAAACCTG--CCCCAGAACCTCAGACTCTAC-TGCCATCA 1773
Query 1620 --------------TCCT-------------CCTAAGC--CAAAAACAT---CACCACGCCCAAGAATCCCACA 1661
.||| ||.||.| |||.||||| ||||||| .|||| |||.|
Sbjct 1774 CAGTCAACAATAGGACCTGAAACACCAGGAACCAAACCTTCAACAACATTAGCACCACG--AAAGA---CCAAA 1842
Query 1662 AACACAACCAGTTCCTAAGGT-GCCCCAG--CGTGTTACTGCAAAACCAAAAACGTCACCAAGTCCAGAAGTGT 1732
| .|||||.|| || |||||.| |..||..|.|| ||.|||||..||||.||||||||||||.
Sbjct 1843 A----GACCAGGTC-----GTCGCCCCCGCCCCCGTCCCCGC----CCTAAAACCACACCTAGTCCAGAAGTGC 1903
Query 1733 CATACACCACACCTGCTCCAAAAGATGTGCTCCTTCCTCATAAACCATACCCTGAGGTCTCTCAGAGCGAACCT 1806
|..|..|||.|||.|||| || ||||||
Sbjct 1904 CCAAGTCCAAACCCGCTC-------TG-----------------------------------------GAACCT 1929
Query 1807 GCTCCTCTAGAGACACGAGGCATC-----CCTTTTATACCCATGATTTCCCCAAGTCCTAGTCAAGAG-GAACT 1874
|| |||||..||.| ||.||..|.||||..|.|.||.|||..||...| ||| ||.||
Sbjct 1930 GC-----------CACGATACAACCGGAGCCCTTGGTGCCCACAACTGCCTCAAAACCATCT---GAGAGACCT 1989
Query 1875 ACAGACCACTCTGGAAGAAACAGACCA-ATCCACC-CAA---GAACCT--TTCACAACTAAGATTCCACGAACA 1941
| |.||||| |.|||||||| ||.|||| ||| .|.||| ||||.|||.| ||| .||||
Sbjct 1990 A-AAACCAC--------ACACAGACCAGATGCACCTCAAATTCAGCCTGGTTCAAAACCA-----CCA-AAACA 2048
Query 1942 ACTGAACTAGC-AAAGACAACTCAGGCGCCA---CACAGATTTTATACTACTGTGAGGCCCAGAACATCTGACA 2011
|.| |||..| ||| |.||| ||||| |||||| |.||||
Sbjct 2049 ATT--ACTTCCTAAA-----------CCCCAAACCACAG---------------------CAGAAC--CAGACA 2086
Query 2012 AGCCAC-----ACATCAGAC-CTGGGGTCAAGCAAGCACCCAG-GCCATCAGGTGCTGATAGAAA-TGTA---- 2073
.||||| |.|||.|.| ||| |.||.| .|||| |.|||| ||.|
Sbjct 2087 TGCCACCAACTAAATCCGTCTCTG-------------AGCCTGTTCCAT----------TTGAAACTGAAGCTC 2137
Query 2074 --TCAGTGGACTCTA---CCCACCCCACTAAAA---AGCCAGGGACTCGCCGCCCACCCTTGCCACCCAGA--- 2136
|||.| |||..|| |||| ||||..|.| ||||.|..||| .|| |||
Sbjct 2138 CCTCAAT-GACCATAGTTCCCA--CCACAGACATTGAGCCTGTAACT------------GTG------AGAACT 2190
Query 2137 ---CCTACACACCCACGAAGAAAACCTTTACCACCAAATAATGTCACTGGAAAGCCAGGAAGTGCAGGAATCAT 2207
.||||| ..||.|| |.|||.|.||||| ||..|| ||.|.||| ||.||| ||.
Sbjct 2191 GAGGCTACA--------GTGACAA-CATTAGCTCCAAA-AACATC--------GCAACGAA---CAAGAA-CAC 2242
Query 2208 TTCATC--AGGCCCA-----ATAACTACACCAC-CCCTGAGGTCAACAC-CCAGGCC-TACTGGAACTCCCTTG 2271
.||.|| .|.|||| |.|||.||.|||| |||.||| |||| .|||.|| .|||.|| |.|||
Sbjct 2243 GTCGTCCACGTCCCAAACATAAAACCACGCCACGCCCAGAG----ACACTGCAGACCAAACTAGA----CTTTG 2308
Query 2272 GAGAGAATAGAGACAGATATAAAGCAACCAACAGTTCCTGCCTCTGGAGAAGAACTGGAAAATATAACTGACTT 2345
||...|.|| ||| ||||.|.|| |||
Sbjct 2309 GACCTATTA--------------------------------CTC----------CTGGGACAT--------CTT 2332
Query 2346 TAGCTCAAGCCCAACAAGAGAAACTGATCCTCTTGGGAAGCCAAGATTCAAAGGACC--TCATGTGCGATACAT 2417
.|||| |||||||.|..||| || ||||.||| || ||.| ||||
Sbjct 2333 CAGCT-----CCAACAACAACAAC-------------AA----------AAAGAACCCGTC--GTCC---ACAT 2373
Query 2418 CCAAAAGCCTGACAACAGTCCCTGCTCCAT-------TACTGACTCTGTCAAAC------GGTTCCCCAAAGAG 2478
||.||| |||.|.| ||..||.|||| ||| .|||||| ||.|.||.|||
Sbjct 2374 CCCAAA-CCTAAAA-----CCACGCCCCATCCAGAAGTAC-------CTCAAACTAAACTGGCTACCAAAA--- 2431
Query 2479 GAGGCCACAGAGGGGAATGCCACCAGCCCACCACAGAACCCACCCACCA--------ACCT--CACTGTGGTCA 2542
||.|| .|.|||||||.|||.||| |||| .||| .||
Sbjct 2432 --------------------CATCA------AAAAGAACCCGCCCTCCACGTCCCAGACCTAAAACT----ACA 2475
Query 2543 CCGTGGAAGGGTGCCCCTCATTTGTCATCTTGGACTGGGAAAA---------GCCA-----CTAAATGACACTG 2602
|||.| |||||| |.||.||..||| .||| ||.| ||| ||..|||
Sbjct 2476 CCGAG---------CCCTCA---GGCACCTGAGAC----CAAACCTGTTCCTGCTACAGTCCTA---GAACCTG 2530
Query 2603 TCACTGAATATGAAGTTATATCCAGAGAAAATGGGTCATTCAGTGGGAAGAACAAGTCCATT------CAA--- 2667
||||| .|||.| ||.||| |..|| ||||| |||| |||
Sbjct 2531 TCACT---------CTTAGA-CCTGAG-----GCCTC-------------AACAA---CATTAGCTTCCAAAAC 2573
Query 2668 ATGACAAATCAGACA--TTTTCCACAGT---AGAA-AATCTGAAACCAAACACGA-GTTATGAATTCCAGGTGA 2734
||.|||| |.|||| |..||||| || |||| || ||||| ||||.| ||..|||| .||..|||
Sbjct 2574 ATCACAA--CGGACACGTCGTCCAC-GTCTCAGAACAA----AAACC--ACACCACGTCCTGAA--GCACCTGA 2636
Query 2735 AACCCAAAAACCCGCT-----TGGTGAAGGCCCGGTCAGCAACACAGTGGCATTCAGTACTGAATCAGCGGACC 2803
|.|| |||||.|.| ||..|| |.||| ||| |.||..||.||||.||||| |||
Sbjct 2637 ATCC---AAACCAGTTCCTACTGCGGA------GCTCA--AAC-CTGTTACACTCAGAACTGA-------GAC- 2690
Query 2804 CAAGAGTGAGTGA----GCCAGTTTCTGCAGGAAGAGATGCCATCTGGACT--------------GAAAGACCC 2859
.||.|||| .|.||.|.|| ||.|.||..||.| |.||| .||| ||
Sbjct 2691 -----TTGGGTGACAACACAAGCTCCT-----AAAACATCACAAC-GAACTCGTCGTCCACGTCCCAAA-AC-- 2750
Query 2860 TTTAATTCAGACTCTTACTCAGAGT-GTAAGG----GCAAACAATATGTCAAAAGGACATGGTATAAAAAAT-- 2926
|.||..||.|| || ||| .|.||| .||||| |||| .|||| |
Sbjct 2751 -TAAAACCACAC-------CA-AGTCCTGAGGTTCCTCAAAC-------CAAA-----CTGGT--------TCC 2795
Query 2927 TTGTAGGAGTGCAG--CTGTGCAACT----CTCTCAGATACAAGATTTACTTGAGCGACTCCCTCACAGGAAAA 2994
||.|| ||| || ||.|.|| |||||||| |||..|| |||| ||||
Sbjct 2796 TTCTA------CAGATCT-TGAACCTGGTACTCTCAGA----------ACTGAAG---CTCC--------AAAA 2841
Query 2995 TTTTATAACATAGGTGATCAGAGGGGCCATGGAGAAGATCACTGCCAGT--TTG----TGGATTCATTTTTAGA 3062
|.|||.|.|| |.||| .|||| ||| || .||.|||||||
Sbjct 2842 ------ACCATGGTTG----------------------TTACT-ACAGTCCTTGAACCTG---ACACTTTTAGA 2883
Query 3063 TGGACGCACTGGGCAGCAACTCACTTCTGACC-AGTTACCAATCAAAGAAGGTTATTT------------CAGA 3123
||| ||||.||| .|||.||.||||..| |.||
Sbjct 2884 -----------------------------ACCAAGTTTCCA--GAAACAACGTTAGCTCCTAAAACACAACGGA 2926
Query 3124 GCAGTTCGCCAGGAACCTGTCCAATTTGGAGAAATAGGTGGTCACACCCAA------ATCAA----TTATGT-- 3185
||..|||.| ||.|||| ||.|||||| ||||| |.|.||
Sbjct 2927 -CACGTCGTC-----CCCGTCC--------------------CAGACCCAAAACTACATCAAGTCCTGAAGTAC 2974
Query 3186 -TCAG--------TGGTATGAATGTGGGACTACAATTCCTGGAAAATGG------ 3225
|||| .|||| |||| ||..|.|||| |||
Sbjct 2975 CTCAGAACAAATCGGGTA--AATG------TATGAATCCT------TGGCTTAAG 3015
