Nucleotide Global Alignment
Description
- Query:
- TRCN0000468783
- Subject:
- XR_001778903.1
- Aligned Length:
- 4360
- Identities:
- 2400
- Gaps:
- 1695
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTGCTTGTCTCAGCGATGTGATTATGCTGTAGTTGAAACTAGAATAGCTTACGCTCTAAGGGTAATGTTTGTAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTAAATTCAAACGCTTTACATGCCTGAGTTTTAGCTCCTACAAAATGCTGAATGAAATTCTAAAAGGGACTAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCAGATTCCAAGCCTGCTGTCGTCACACGCTGGGTTATGGTTAAGATCGCGGGGTGAGGTGACTCCCTCGTTGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGTTACGTGGCTAACATGACTTTCTTTCGGAGGTGGATTGCGGGTGGGTGGCGGGCGGGTAGGTTGTCATACG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCCAGCTTGATCCCCTTTTAAAAAGCGGACTTGAAGGCGTCCTTTCCTCCTCTCCCTTAGGTGTGGCAACGAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AATCCGAGAGGTTGAGGCGGCAGGGTCCGCTGTATGGACTACATTTCCCAGAGGGCTCCAGGAGCCGCACGCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGCTGTGCAATTAGCTTTCCCACACTCTTCTGCCAGTCTGCATTCTAGGTTTCCCTGGACTTCCGGATAAGGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGTGGGTGGCCGCGCCAGAACGTCAGTCCGAGCGCTCCCCAGTCCTCCCGCGGGATGGTGGCGGCGGCCTTGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGCGGCCTTGCGTGTGGTTGGGGCGTTGGTTGCGCACGCGCGGCGAGGGTTGCGGGGCGGGGCCTTGTGCGGCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGTCTAGCTGTGAAGCTGGGTGGTGGGTGGCAATGTGGCTCCGCCGCCGGGGTTTGGGGGTGCCCTCCGCCTC 740
Query 1 ----------------------------------------ATGGTGCCCTGGGTGCGGACGA--TGGGGCAGAA 32
||||.|.|.||||||||||||| ||.|| ||.
Sbjct 741 TGCCTCTGAGGGCGGCACGTCCTCCCCTGCGTGGACTGAGATGGGGTCTTGGGTGCGGACGATCTGCGG--GAG 812
Query 33 GCTGAAGCAGCGGCTGCGACTGGACGTGGGACGCGAGATCTGCCGCCAGTACCCGCTGTTCTGCTTCCTGCTGC 106
||||||||||||||||||.|||||||||||.||||||||.|||||.|||||.||||||||||||||.|||||||
Sbjct 813 GCTGAAGCAGCGGCTGCGGCTGGACGTGGGGCGCGAGATTTGCCGTCAGTATCCGCTGTTCTGCTTTCTGCTGC 886
Query 107 TCTGTCTCAGCGCCGCCTCCCTGCTTCTTAACAGGTATATTCATATTTTAATGATCTTCTGGTCATTTGTTGCT 180
||||.|||||||.||||||.|||||.||.|||||||||.|.|||.|.|||||||||||||||||.|||||||||
Sbjct 887 TCTGCCTCAGCGTCGCCTCGCTGCTCCTCAACAGGTATCTGCATGTCTTAATGATCTTCTGGTCGTTTGTTGCT 960
Query 181 GGAGTTGTCACATTCTACTGCTCACTAGGACCTGATTCTCTCTTACCAAATATATTCTTCACAATAAAATACAA 254
||||||||.|||||||||||.|||.|||||||.|||||.|||||||||||||||||||||||||||||||||||
Sbjct 961 GGAGTTGTGACATTCTACTGTTCATTAGGACCCGATTCCCTCTTACCAAATATATTCTTCACAATAAAATACAA 1034
Query 255 ACCCAAGCAGTTAGGACTTCAGGAATTATTTCCTCAAGGTCATAGCTGTGCTGTTTGTGGTAAAGTGAAATGTA 328
|||||||||.|||||||||||.||.||||||||.|||||.||||||||||||||||||||||||||||||||||
Sbjct 1035 ACCCAAGCAATTAGGACTTCAAGAGTTATTTCCGCAAGGACATAGCTGTGCTGTTTGTGGTAAAGTGAAATGTA 1108
Query 329 AACGACATAGGCCTTCTTTGCTACTTGAAAACTACCAGCCATGGCTAGACCTGAAAATTTCTTCCAAGGTTGAT 402
||||.|||||||||||.|||||.|||||||||||.|||||.|||||||||||||||.|||||||.|||||.|||
Sbjct 1109 AACGGCATAGGCCTTCCTTGCTCCTTGAAAACTATCAGCCCTGGCTAGACCTGAAAGTTTCTTCGAAGGTAGAT 1182
Query 403 GCATCTCTCTCAG------------------------------------------------------------- 415
|||||||||||||
Sbjct 1183 GCATCTCTCTCAGAGGTTCTTGAATTAGTGTTGGAAAACTTTGTCTATCCATGGTACAGGGATGTGACGGATGA 1256
Query 416 -----------------------------------------------------------------------AGG 418
|||
Sbjct 1257 TGAGTCCTTTGTTGATGAGCTGAGGATCACCTTACGGTTTTTTGCATCTGTCTTGGTGCGAAGAATTCACAAGG 1330
Query 419 TGGATATTCCATCTATTATAACCAAGAAACTATTAAAAGCAGCAATGAAGCATATAGAAGTGATAGTTAAAGCC 492
|||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.
Sbjct 1331 TGGATATTCCATCTATTATAACCAAGAAACTATTAAAAGCAGCAATGAAACATATAGAAGTGATTGTTAAAGCA 1404
Query 493 AGACAGAAAGTAAAAAATACAGAGTTTTTACAGCAAGCTGCTTTAGAAGAATATGGTCCAGAGCTTCATGTTGC 566
||||||||||||||.||.||.||||.||||||.|||||.||||||||||||||||||||||||||||||||.||
Sbjct 1405 AGACAGAAAGTAAAGAACACGGAGTATTTACAACAAGCCGCTTTAGAAGAATATGGTCCAGAGCTTCATGTGGC 1478
Query 567 TTTGAGAAGTCGAAGAGATGAATTGCACTATTTAAGGAAACTTACTGAACTGCTTTTTCCTTATATTTTGCCTC 640
..||||||||||||||||||||||.||.|||||||||||.||||||||..|.||||||||||||||||||||||
Sbjct 1479 CCTGAGAAGTCGAAGAGATGAATTACAGTATTTAAGGAAGCTTACTGAGTTACTTTTTCCTTATATTTTGCCTC 1552
Query 641 CTAAAGCAACAGACTGCAGATCTCTGACCTTACTTATAAGAGAGATTCTGTCTGGCTCTGTGTTCCTTCCTTCT 714
|||||||||||||||||||.||.|||||.|||||.||||||||||||||||||||.||||||.|.|||||||||
Sbjct 1553 CTAAAGCAACAGACTGCAGGTCCCTGACATTACTCATAAGAGAGATTCTGTCTGGTTCTGTGCTTCTTCCTTCT 1626
Query 715 TTGGATTTCCTAGCTGATCCAGATACTGTGAATCATTTGCTTATCATCTTCATAGATGACAGTCCACCTGAAAA 788
|||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.||.||||||||
Sbjct 1627 TTGGATTTCCTAGCTGATCCAGATACTGTCAATCATTTGCTTATCATCTTCATAGACGACAGCCCTCCTGAAAA 1700
Query 789 AGCAACTGAACCGGCTTCTCCTTTGGTTCCATTCTTGCAGAAATTTGCAGAACCTAGAAATAAAAAGCCATCTG 862
||||||||||||.|||||.|||||||||||||||.|||||||||||||||||||||||||||||||||||||.|
Sbjct 1701 AGCAACTGAACCAGCTTCCCCTTTGGTTCCATTCCTGCAGAAATTTGCAGAACCTAGAAATAAAAAGCCATCCG 1774
Query 863 TGCTGAAGTTAGAATTGAAGCAAATCAGAGAGCAACAAGATCTTTTATTTCGTTTTATGAACTTTCTGAAACAA 936
|||||||||||||..||||.|||||||||||.||.||.||.|||||.||.||.|||||||||||.|||||||||
Sbjct 1775 TGCTGAAGTTAGAGCTGAAACAAATCAGAGAACAGCAGGACCTTTTGTTCCGCTTTATGAACTTCCTGAAACAA 1848
Query 937 GAAGGCGCAGTGCACGTGTTGCAGTTTTGTTTGACTGTGGAGGAATTTAATGATAGAATTTTACGACCAGAATT 1010
|||||.||.||||||||..|||||||.|||.||||.||.|||||||||||||||||||||||.||.|||||.||
Sbjct 1849 GAAGGGGCCGTGCACGTCCTGCAGTTCTGTCTGACAGTCGAGGAATTTAATGATAGAATTTTGCGTCCAGAGTT 1922
Query 1011 ATCAAATGATGAAATGCTGTCTCTTCATGAAGAATTGCAGAAGATTTATAAAACATACTGTTTGGATGAAAGTA 1084
||||||||||||||||||.|||||.||||||||||||||||||||||||||.||.|||||.|||||||||||.|
Sbjct 1923 ATCAAATGATGAAATGCTATCTCTCCATGAAGAATTGCAGAAGATTTATAAGACCTACTGCTTGGATGAAAGCA 1996
Query 1085 TTGACAAAATTAGATTTGATCCCTTCATTGTAGAAGAGATTCAAAGAATTGCTGAAGGCCCATACATAGATGTT 1158
|||||||||||.|.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 TTGACAAAATTCGCTTTGATCCCTTCATTGTCGAAGAGATTCAAAGAATTGCTGAAGGCCCATACATAGATGTT 2070
Query 1159 GTGAAACTTCAAACTATGAGATGTCTTTTTGAAGCATATGAACATGTTCTTTCCCTTTTGGAGAATGTATTTAC 1232
|||||.||.|||||||||||.||||||||||||||||||||.||.||.||||||||.||||||||.||.|||||
Sbjct 2071 GTGAAGCTGCAAACTATGAGGTGTCTTTTTGAAGCATATGAGCACGTCCTTTCCCTGTTGGAGAACGTGTTTAC 2144
Query 1233 TCCTATGTTCTGCCATAGTGATGAGTATTTCAGACAACTTTTAAGAGGTGCAGAATCACCAACACGCAATTCAA 1306
.||.|||||||||||.||||||||||||||.||.|||||||||||||||||||||||.||.|||||||||||.|
Sbjct 2145 CCCCATGTTCTGCCACAGTGATGAGTATTTTAGGCAACTTTTAAGAGGTGCAGAATCGCCCACACGCAATTCCA 2218
Query 1307 AATTGAACAGGAACACACAGAAAAGGGGAGAATCATTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGGAGTA 1380
||||.|||||.|.||||||.|||||.||||||||.|||||||||||||||||||||||||||||||||||.|||
Sbjct 2219 AATTCAACAGAAGCACACAAAAAAGAGGAGAATCGTTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGGCGTA 2292
Query 1381 TTCAAAAGTACCACAATGGAGGGAGCTATGTTGCCTAATTATGGTGTAGCTGAAGGTGAAGATGATTTTATTGA 1454
|||||.|||||.|||||||||||||||.||.||||||||||.||.||.||||||||.||||||||.||||||||
Sbjct 2293 TTCAAGAGTACGACAATGGAGGGAGCTGTGCTGCCTAATTACGGGGTGGCTGAAGGCGAAGATGACTTTATTGA 2366
Query 1455 AGAAGGTATTGTTGTAATGGAAGATGATTCTCCAGTGGAGGCTGTGAGCACACCTAATACTCCCCGAAACCTTG 1528
||||||.|||||.||||||||.|||||.||||||||.||.|||||||||||||||||.|||||.||||||||||
Sbjct 2367 AGAAGGGATTGTGGTAATGGAGGATGACTCTCCAGTAGAAGCTGTGAGCACACCTAACACTCCTCGAAACCTTG 2440
Query 1529 CTGCATGGAAAATTAGCATTCCATATGTAGACTTTTTTGAGGATCCCTCCTCTGAAAGGAAGGAGAAAAAAGAA 1602
||||.|||||||||||||||||.|||||||||||||||||.||||||||||||||||||||.|||||.||.||.
Sbjct 2441 CTGCCTGGAAAATTAGCATTCCGTATGTAGACTTTTTTGAAGATCCCTCCTCTGAAAGGAAAGAGAAGAAGGAG 2514
Query 1603 AGAATTCCTGTGTTTTGTATTGATGTTGAAAGAAATGATAGAAGAGCAGTTGGACACGAGCCTGAACATTGGTC 1676
||||||||||||||||||||.||||||||||||||.||.|||.||||||||||||||||||||||.||||||||
Sbjct 2515 AGAATTCCTGTGTTTTGTATCGATGTTGAAAGAAACGACAGACGAGCAGTTGGACACGAGCCTGAGCATTGGTC 2588
Query 1677 TGTCTATAGAAGATATCTTGAATTCTATGTACTTGAATCAAAACTAACAGAATTTCATGGTGCATTTCCTGATG 1750
||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||..||||||||||||
Sbjct 2589 TGTCTATAGAAGATATCTTGAATTCTATGTTCTTGAATCAAAACTAACAGAATTTCATGGCACATTTCCTGATG 2662
Query 1751 CCCAGCTTCCTTCTAAGAGGATCATTGGCCCCAAAAATTATGAATTCTTAAAGTCAAAGAGGGAAGAGTTCCAA 1824
|.||||||||.||.||.||||||||||||||||||||.|||||.||.||.|||||.|||||.||.||||||||.
Sbjct 2663 CTCAGCTTCCATCCAAAAGGATCATTGGCCCCAAAAACTATGAGTTTTTGAAGTCGAAGAGAGAGGAGTTCCAG 2736
Query 1825 GAATATCTACAGAAACTTCTGCAGCATCCAGAACTGAGTAATAGTCAACTTCTGGCAGACTTTCTTTCCCCTAA 1898
||.|||||.|||||||||.|||||||.||.||.||||||||.||.||.||||||||.||||||||.|||||.||
Sbjct 2737 GAGTATCTGCAGAAACTTGTGCAGCACCCGGAGCTGAGTAACAGCCAGCTTCTGGCTGACTTTCTCTCCCCCAA 2810
Query 1899 TGGTGGGGAAACACAATTTCTTGATAAGATACTACCAGATGTAAATCTTGGGAAAATTATAAAATCTGTTCCTG 1972
.||||||||.|||||.|||||.|||||||||||.|||||||||||||||||.|||||||||||.||||||||||
Sbjct 2811 CGGTGGGGAGACACAGTTTCTAGATAAGATACTTCCAGATGTAAATCTTGGAAAAATTATAAAGTCTGTTCCTG 2884
Query 1973 GAAAACTAATGAAAGAGAAAGGTCAGCATTTGGAACCTTTTATCATGAATTTCATTAATTCTTGTGAGTCTCCA 2046
|.||||||||||||||||||||||||||||||||.||.||.|||||||.|||||||||||||||.||.|||||.
Sbjct 2885 GGAAACTAATGAAAGAGAAAGGTCAGCATTTGGAGCCATTCATCATGAGTTTCATTAATTCTTGCGAATCTCCC 2958
Query 2047 AAGCCTAAACCAAGTAGACCAGAACTGACCATTCTCAGCCCTACTTCAGAAAACAACAAGAAGCTTTTCAATGA 2120
||.||||||||.|||.|.|||||||||||.|||||||||||.|||||.|||||||||||||||||||||||.||
Sbjct 2959 AAACCTAAACCGAGTCGGCCAGAACTGACGATTCTCAGCCCCACTTCCGAAAACAACAAGAAGCTTTTCAACGA 3032
Query 2121 TCTGTTTAAAAATAATGCAAACCGTGCTGAAAATACAGAGAGAAAGCAAAATCAGAATTATTTTATGGAGGTGA 2194
|||||||||.||||||||||||||.|||||.||.||||||.||||||||||||||||.||.||.||||||||||
Sbjct 3033 TCTGTTTAAGAATAATGCAAACCGCGCTGAGAACACAGAGCGAAAGCAAAATCAGAACTACTTCATGGAGGTGA 3106
Query 2195 TGACTGTAGAAGGAGTCTATGATTACCTGATGTATGTAGGACGGGTAGTTTTCCAGGTTCCTGACTGGCTTCAT 2268
|||||||.||.|||||||||||||||||||||||||||||.||.||||||||.||.||.||.||||||||||||
Sbjct 3107 TGACTGTGGACGGAGTCTATGATTACCTGATGTATGTAGGGCGAGTAGTTTTTCAAGTCCCAGACTGGCTTCAT 3180
Query 2269 CATCTCTTAATGGGAACTCGAATCCTCTTTAAAAACACCCTGGAAATGTATACTGATTACTATCTTCAGTGTAA 2342
|||||..|||||||||||||||||||||||||.|||||||||||||||||.||.||.|||||.||.|||||.||
Sbjct 3181 CATCTTCTAATGGGAACTCGAATCCTCTTTAAGAACACCCTGGAAATGTACACAGACTACTACCTCCAGTGCAA 3254
Query 2343 ACTAGAACAGCTATTTCAGGAGCACCGTTTGGTCTCACTCATAACACTTCTCAGAGATGCTATATTCTGTGAAA 2416
.||.||.|||||.||||||||||||||..|||||||.|||||.||.||||||||||||||||||||.|||||||
Sbjct 3255 GCTGGAGCAGCTGTTTCAGGAGCACCGGCTGGTCTCCCTCATCACCCTTCTCAGAGATGCTATATTTTGTGAAA 3328
Query 2417 ACACTGAACCTCGCTCTCTCCAAGATAAGCAAAAAGGAGCAAAACAGACTTTTGAAGAAATGATGAATTACATT 2490
|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3329 ATACTGAACCTCGCTCTCTCCAAGATAAGCAAAAAGGAGCAAAACAGACTTTTGAAGAAATGATGAATTACATT 3402
Query 2491 CCAGATCTGTTAGTCAAGTGTATTGGTGAAGAAACCAAGTATGAAAGCATCAGACTTCTGTTTGATGGCTTACA 2564
|||||||||.|||||||||||||.|||||||||||||||||.||||||||||||||.||||||||||||.|.||
Sbjct 3403 CCAGATCTGATAGTCAAGTGTATCGGTGAAGAAACCAAGTACGAAAGCATCAGACTCCTGTTTGATGGCCTGCA 3476
Query 2565 GCAACCAGTACTCAACAAGCA----------------------------GCTGACT-------------TATGT 2597
|||.|||||.||||||||||| |||| || |.||.
Sbjct 3477 GCAGCCAGTGCTCAACAAGCAGGTAAGGGAGGTGGTGGGCGTTGGTGTGGCTG-CTGAGCAGCGGGATGTCTGG 3549
Query 2598 TTTATTGGACAT-TGTGA-----TACAGGAACTGTTTCCAGAGC---TCAATAAGGTA--CAAAA--------- 2651
|||||| ||.| ||||| ||||.||..|.| ||| |||.|||..|| |.|||
Sbjct 3550 TTTATT--ACCTGTGTGAGTCACTACACGACATCT------AGCCCATCATTAAAATAATCTAAACGTTCAGAT 3615
Query 2652 -GGAA--------------GTTAC-----------------CTCTGTGACATTTTGGATG-------------- 2679
|||| |||.| ||.||||| |.||.|||
Sbjct 3616 GGGAAAATCTGTATGTACTGTTTCTGCTGGTTCTCTTACTTCTTTGTGA---TATGCATGGTTGCTTAAAGTTA 3686
Query 2680 -------------------------------------------------------------------------- 2679
Sbjct 3687 ATATATCTTCTACCAGAAAATTTTAGATGTTTAGAAAATTTCTGACATAGTATAAACATTTTGCTAATTTAAGT 3760
Query 2680 -------------------------------------------------------------------------- 2679
Sbjct 3761 CAAAGAATACCAGTTAACATTTTTATATATATAGTCGCTATATATTTTGTTGAAATGTTAATATAATATCAGTT 3834
Query 2680 -------------------------------------------------------------------------- 2679
Sbjct 3835 TCATACTTGTTTATTTAAAATTTGTTCAAAACAATTTACATAGAATGGGTGAAGCATAGTAATGCCAGTTATTT 3908
Query 2680 -------------------------------------------------------------------------- 2679
Sbjct 3909 TATTCACAAAGGTCTCTACTATGCATGTAAGGATGGAGCATTGTCGGTGGTGTTAGAGACACCTTTTTGCGTGT 3982
Query 2680 -------------------------------------------------------------------------- 2679
Sbjct 3983 TTTGCATTGCCGTTACGTTTCCCGCTGACTTGCGTAGAGATTTACCGTGGTCCTGGCTCCCGTGCCTGTAACTT 4056
Query 2680 -------------------------------------------------------------------------- 2679
Sbjct 4057 TTCTGTCTAGTTCCTTACATTTTGTTACATGTCTTTGTGCTGCAGCTGACCTATGTGTTGCTGGACATTGTGAT 4130
Query 2680 -------------------------------------------------------------------------- 2679
Sbjct 4131 ACAGGAGCTGTTTCCAGAGCTAAATAAGGTACAAAAGGAAGCTACCTCCATGACATCCTGGATGTAAACACTTG 4204
Query 2680 -------------------------------------------------------------------------- 2679
Sbjct 4205 GTATAGAATAACATACCAGAATAATAGAAATGTACTTTTCACTTTGTATATTTTTATAAATATCATGTACTTTA 4278
Query 2680 -------------------------------------------------------------------- 2679
Sbjct 4279 GTGTTTGGAATATATTTTTTGTTTTAATAAAGACTAACAAATAGCAATAAAAAGTGGTTTAGGTATTA 4346
